Wall clock time and date at job start Mon Mar 30 2020 00:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46827 * 2 1 4 4 C 1.53002 * 109.47086 * 239.99809 * 2 1 3 5 5 N 1.46899 * 109.47265 * 120.00157 * 2 1 3 6 6 C 1.47962 * 111.00256 * 58.80550 * 5 2 1 7 7 C 1.53939 * 86.18132 * 222.41870 * 6 5 2 8 8 C 1.47961 * 110.99977 * 319.44458 * 5 2 1 9 9 H 1.09001 * 113.76015 * 23.26611 * 8 5 2 10 10 C 1.50704 * 113.86205 * 251.91632 * 8 5 2 11 11 O 1.21281 * 119.99418 * 3.88146 * 10 8 5 12 12 N 1.34772 * 120.00024 * 183.88591 * 10 8 5 13 13 C 1.46503 * 119.99906 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.46751 * 179.97438 * 13 12 10 15 15 C 1.53008 * 109.46605 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.46801 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00041 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99484 * 180.02562 * 16 15 14 19 19 N 1.31504 * 120.00345 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99598 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47190 * 60.00223 * 20 18 16 22 22 H 1.48505 * 109.47123 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47206 * 300.00152 * 20 18 16 24 24 H 1.09006 * 109.47284 * 309.37625 * 1 2 3 25 25 H 1.08995 * 109.47709 * 69.37992 * 1 2 3 26 26 H 1.09002 * 109.47022 * 189.37921 * 1 2 3 27 27 H 1.09007 * 109.46915 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47194 * 299.99791 * 3 2 1 29 29 H 1.08997 * 109.47566 * 60.00464 * 3 2 1 30 30 H 1.09001 * 109.47265 * 300.00195 * 4 2 1 31 31 H 1.09011 * 109.46838 * 59.99790 * 4 2 1 32 32 H 1.08998 * 109.47184 * 179.97438 * 4 2 1 33 33 H 1.08996 * 113.75690 * 108.09870 * 6 5 2 34 34 H 1.09006 * 113.75759 * 336.73627 * 6 5 2 35 35 H 1.08997 * 113.73199 * 138.07925 * 7 6 5 36 36 H 1.08999 * 113.73046 * 269.25913 * 7 6 5 37 37 H 0.97005 * 119.99992 * 359.97438 * 12 10 8 38 38 H 1.08995 * 109.47158 * 299.99835 * 13 12 10 39 39 H 1.09003 * 109.46684 * 59.99973 * 13 12 10 40 40 H 1.08995 * 109.47331 * 299.99944 * 14 13 12 41 41 H 1.09003 * 109.47373 * 60.00611 * 14 13 12 42 42 H 1.08995 * 109.47324 * 300.00063 * 15 14 13 43 43 H 1.08999 * 109.47348 * 60.00097 * 15 14 13 44 44 H 0.97002 * 120.00293 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0197 -0.6925 1.1994 6 6 1.5219 -2.0851 1.2481 7 6 1.2722 -1.8344 2.7463 8 6 1.2070 -0.3396 2.3844 9 1 0.2037 0.0098 2.1406 10 6 1.9182 0.5546 3.3671 11 8 3.0276 0.9734 3.1129 12 7 1.3213 0.8888 4.5283 13 6 2.0130 1.7577 5.4839 14 6 1.1226 1.9798 6.7081 15 6 1.8453 2.8867 7.7064 16 6 0.9686 3.1049 8.9126 17 1 -0.0062 2.6427 8.9624 18 6 1.4111 3.8948 9.9525 19 7 2.5983 4.4572 9.8920 20 14 0.3242 4.1659 11.4473 21 1 0.0301 2.8595 12.0891 22 1 1.0255 5.0461 12.4163 23 1 -0.9470 4.8073 11.0253 24 1 -0.3634 0.6520 0.7944 25 1 -0.3634 0.3619 -0.9617 26 1 -0.3633 -1.0140 0.1675 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6766 -0.2074 -2.1393 32 1 3.1300 -0.7209 -1.2495 33 1 2.2897 -2.8329 1.0499 34 1 0.6107 -2.2461 0.6719 35 1 0.3271 -2.2401 3.1073 36 1 2.1178 -2.0971 3.3819 37 1 0.4338 0.5541 4.7314 38 1 2.9461 1.2871 5.7933 39 1 2.2283 2.7168 5.0128 40 1 0.1897 2.4505 6.3984 41 1 0.9069 1.0208 7.1793 42 1 2.7780 2.4155 8.0161 43 1 2.0614 3.8457 7.2356 44 1 2.9098 5.0126 10.6238 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896163657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:31 Heat of formation + Delta-G solvation = -14.434059 kcal Electronic energy + Delta-G solvation = -20812.207857 eV Core-core repulsion = 17765.285453 eV Total energy + Delta-G solvation = -3046.922404 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.26049 -38.63864 -35.31431 -35.06800 -33.25537 -31.21863 -28.53738 -27.72294 -27.57904 -26.97656 -25.77639 -23.06074 -21.32570 -20.64192 -19.96804 -18.80135 -17.27287 -16.58485 -16.35835 -15.62078 -15.25908 -14.92071 -14.52514 -14.34628 -14.07935 -13.89083 -13.65245 -13.12787 -12.72360 -12.52744 -12.26432 -12.20694 -11.91321 -11.81846 -11.79604 -11.60343 -11.43724 -11.28323 -10.88436 -10.83739 -10.72482 -10.70935 -10.61524 -9.84689 -9.76674 -9.34731 -9.12506 -8.78145 -8.69171 -8.36564 -6.01138 -4.04432 2.82803 3.20005 3.32118 3.36952 3.38843 3.86456 4.21676 4.44472 4.47745 4.49155 4.68744 4.75440 4.90035 4.95225 5.08727 5.24850 5.32811 5.34437 5.36674 5.47713 5.51019 5.63363 5.65899 5.76069 5.76236 5.79311 5.81019 5.86633 5.94158 6.17946 6.19088 6.31324 6.54730 6.62220 6.84818 6.89387 7.02769 7.64171 7.77324 7.81312 7.97644 8.38422 8.53601 9.02147 9.59644 11.10142 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.041892 B = 0.002988 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.227072 B = 9367.187851 C = 9532.669783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.066 3.934 3 C -0.130 4.130 4 C -0.136 4.136 5 N -0.438 5.438 6 C -0.004 4.004 7 C -0.130 4.130 8 C -0.003 4.003 9 H 0.110 0.890 10 C 0.520 3.480 11 O -0.522 6.522 12 N -0.728 5.728 13 C 0.119 3.881 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.396 0.604 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.172 -13.023 -20.798 25.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.024 4.024 3 C -0.187 4.187 4 C -0.194 4.194 5 N -0.161 5.161 6 C -0.132 4.132 7 C -0.168 4.168 8 C -0.115 4.115 9 H 0.127 0.873 10 C 0.304 3.696 11 O -0.396 6.396 12 N -0.380 5.380 13 C -0.004 4.004 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.562 4.562 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.229 0.771 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.495 -12.433 -20.915 24.743 hybrid contribution -1.909 0.050 0.912 2.116 sum -6.404 -12.383 -20.002 24.381 Atomic orbital electron populations 1.22610 0.96817 1.02161 1.02811 1.21560 0.92702 0.96132 0.91979 1.21699 1.02389 0.93475 1.01148 1.21817 1.02127 0.99702 0.95756 1.68690 1.44943 1.01933 1.00525 1.23953 1.00210 0.93166 0.95888 1.23285 1.03361 0.92806 0.97374 1.23707 0.97842 0.96346 0.93619 0.87280 1.20058 0.86513 0.80919 0.82099 1.90700 1.19273 1.53306 1.76361 1.46169 1.20873 1.51681 1.19281 1.21607 0.96280 0.93305 0.89212 1.21881 0.98445 1.01036 0.94445 1.19024 0.95699 0.94093 0.92542 1.21173 1.02413 1.30032 1.02554 0.92708 1.25029 0.95116 0.95764 0.98532 1.69952 1.18118 1.32578 1.32632 0.86645 0.80573 0.78118 0.82568 1.20245 1.21263 1.20251 0.91851 0.91601 0.91916 0.91485 0.92705 0.92746 0.92714 0.92162 0.91674 0.89027 0.90515 0.90190 0.88617 0.77085 0.91875 0.91938 0.92807 0.92760 0.96286 0.96310 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.43 7.27 37.16 0.27 -1.16 16 2 C 0.07 0.64 0.72 -131.60 -0.09 0.55 16 3 C -0.13 -1.47 8.63 37.16 0.32 -1.14 16 4 C -0.14 -1.11 8.38 37.16 0.31 -0.80 16 5 N -0.44 -4.94 5.45 -216.43 -1.18 -6.12 16 6 C 0.00 -0.03 6.51 -2.76 -0.02 -0.05 16 7 C -0.13 -1.16 7.84 -25.79 -0.20 -1.36 16 8 C 0.00 -0.03 3.06 -67.80 -0.21 -0.24 16 9 H 0.11 1.00 5.06 -51.93 -0.26 0.74 16 10 C 0.52 7.88 7.22 -10.99 -0.08 7.80 16 11 O -0.52 -10.21 16.69 5.56 0.09 -10.12 16 12 N -0.73 -10.52 5.56 -60.29 -0.33 -10.85 16 13 C 0.12 2.13 5.67 -4.04 -0.02 2.10 16 14 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 15 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.97 13.28 55.43 0.74 -26.23 16 20 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H 0.06 0.52 6.28 -51.93 -0.33 0.19 16 25 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 26 H 0.06 0.41 5.75 -51.93 -0.30 0.12 16 27 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.71 7.68 -51.93 -0.40 0.31 16 30 H 0.05 0.39 7.09 -51.93 -0.37 0.02 16 31 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.50 5.54 -51.93 -0.29 0.22 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 0.98 8.09 -51.93 -0.42 0.56 16 37 H 0.40 4.54 8.47 -40.82 -0.35 4.20 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 347.80 15.07 5.24 5.24 Total: -1.00 -32.84 347.80 -8.62 -41.46 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.74 Total: -0.11 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -0.41 Total: -9.77 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: -0.78 Total: -43.20 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.84 -8.62 -41.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896163657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.026 kcal (2) G-P(sol) polarization free energy of solvation -32.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds