Wall clock time and date at job start Mon Mar 30 2020 00:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46827 * 2 1 4 4 C 1.53002 * 109.47086 * 239.99809 * 2 1 3 5 5 N 1.46899 * 109.47265 * 120.00157 * 2 1 3 6 6 C 1.47962 * 111.00256 * 58.80550 * 5 2 1 7 7 C 1.53939 * 86.18132 * 222.41870 * 6 5 2 8 8 C 1.47961 * 110.99977 * 319.44458 * 5 2 1 9 9 H 1.09001 * 113.76015 * 23.26611 * 8 5 2 10 10 C 1.50704 * 113.86205 * 251.91632 * 8 5 2 11 11 O 1.21281 * 119.99418 * 3.88146 * 10 8 5 12 12 N 1.34772 * 120.00024 * 183.88591 * 10 8 5 13 13 C 1.46503 * 119.99906 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.46751 * 179.97438 * 13 12 10 15 15 C 1.53008 * 109.46605 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.46801 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00041 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99484 * 180.02562 * 16 15 14 19 19 N 1.31504 * 120.00345 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99598 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47190 * 60.00223 * 20 18 16 22 22 H 1.48505 * 109.47123 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47206 * 300.00152 * 20 18 16 24 24 H 1.09006 * 109.47284 * 309.37625 * 1 2 3 25 25 H 1.08995 * 109.47709 * 69.37992 * 1 2 3 26 26 H 1.09002 * 109.47022 * 189.37921 * 1 2 3 27 27 H 1.09007 * 109.46915 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47194 * 299.99791 * 3 2 1 29 29 H 1.08997 * 109.47566 * 60.00464 * 3 2 1 30 30 H 1.09001 * 109.47265 * 300.00195 * 4 2 1 31 31 H 1.09011 * 109.46838 * 59.99790 * 4 2 1 32 32 H 1.08998 * 109.47184 * 179.97438 * 4 2 1 33 33 H 1.08996 * 113.75690 * 108.09870 * 6 5 2 34 34 H 1.09006 * 113.75759 * 336.73627 * 6 5 2 35 35 H 1.08997 * 113.73199 * 138.07925 * 7 6 5 36 36 H 1.08999 * 113.73046 * 269.25913 * 7 6 5 37 37 H 0.97005 * 119.99992 * 359.97438 * 12 10 8 38 38 H 1.08995 * 109.47158 * 299.99835 * 13 12 10 39 39 H 1.09003 * 109.46684 * 59.99973 * 13 12 10 40 40 H 1.08995 * 109.47331 * 299.99944 * 14 13 12 41 41 H 1.09003 * 109.47373 * 60.00611 * 14 13 12 42 42 H 1.08995 * 109.47324 * 300.00063 * 15 14 13 43 43 H 1.08999 * 109.47348 * 60.00097 * 15 14 13 44 44 H 0.97002 * 120.00293 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0197 -0.6925 1.1994 6 6 1.5219 -2.0851 1.2481 7 6 1.2722 -1.8344 2.7463 8 6 1.2070 -0.3396 2.3844 9 1 0.2037 0.0098 2.1406 10 6 1.9182 0.5546 3.3671 11 8 3.0276 0.9734 3.1129 12 7 1.3213 0.8888 4.5283 13 6 2.0130 1.7577 5.4839 14 6 1.1226 1.9798 6.7081 15 6 1.8453 2.8867 7.7064 16 6 0.9686 3.1049 8.9126 17 1 -0.0062 2.6427 8.9624 18 6 1.4111 3.8948 9.9525 19 7 2.5983 4.4572 9.8920 20 14 0.3242 4.1659 11.4473 21 1 0.0301 2.8595 12.0891 22 1 1.0255 5.0461 12.4163 23 1 -0.9470 4.8073 11.0253 24 1 -0.3634 0.6520 0.7944 25 1 -0.3634 0.3619 -0.9617 26 1 -0.3633 -1.0140 0.1675 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6766 -0.2074 -2.1393 32 1 3.1300 -0.7209 -1.2495 33 1 2.2897 -2.8329 1.0499 34 1 0.6107 -2.2461 0.6719 35 1 0.3271 -2.2401 3.1073 36 1 2.1178 -2.0971 3.3819 37 1 0.4338 0.5541 4.7314 38 1 2.9461 1.2871 5.7933 39 1 2.2283 2.7168 5.0128 40 1 0.1897 2.4505 6.3984 41 1 0.9069 1.0208 7.1793 42 1 2.7780 2.4155 8.0161 43 1 2.0614 3.8457 7.2356 44 1 2.9098 5.0126 10.6238 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896163657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:31 Heat of formation + Delta-G solvation = -38.187374 kcal Electronic energy + Delta-G solvation = -20813.237878 eV Core-core repulsion = 17765.285453 eV Total energy + Delta-G solvation = -3047.952425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.09449 -39.84757 -36.89273 -35.84012 -35.15436 -33.02415 -29.61348 -28.55389 -28.38331 -28.09415 -26.98142 -24.79859 -22.31408 -22.26434 -21.06475 -19.63608 -18.56907 -18.25819 -17.30346 -16.95634 -16.57683 -16.43585 -15.84309 -15.42000 -15.12104 -14.96999 -14.68165 -14.27489 -13.83248 -13.76065 -13.58646 -13.44950 -13.26993 -12.93486 -12.72809 -12.67123 -12.55264 -12.41599 -12.40065 -12.15312 -12.00522 -11.67389 -11.59137 -11.52255 -11.46987 -11.25247 -10.69724 -10.55431 -10.05992 -9.56189 -8.19655 -6.31725 1.41497 1.44877 1.52725 1.66440 2.11249 2.42346 2.99915 3.13928 3.47563 3.70427 3.79158 3.98472 4.01262 4.08851 4.18831 4.20735 4.23470 4.37662 4.54230 4.63047 4.70159 4.71372 4.83171 4.88244 4.91534 4.92240 4.93445 5.00193 5.06671 5.10395 5.15881 5.17744 5.23720 5.41284 5.46120 5.52474 5.56349 5.69645 5.83385 6.15923 6.21570 6.66622 6.85944 7.35380 7.38174 8.92425 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.041892 B = 0.002988 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.227072 B = 9367.187851 C = 9532.669783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.063 3.937 3 C -0.127 4.127 4 C -0.132 4.132 5 N -0.475 5.475 6 C 0.005 3.995 7 C -0.123 4.123 8 C 0.001 3.999 9 H 0.135 0.865 10 C 0.515 3.485 11 O -0.574 6.574 12 N -0.715 5.715 13 C 0.132 3.868 14 C -0.100 4.100 15 C 0.024 3.976 16 C -0.542 4.542 17 H 0.068 0.932 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.264 1.264 22 H -0.287 1.287 23 H -0.265 1.265 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.039 0.961 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.415 0.585 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.069 0.931 41 H 0.069 0.931 42 H -0.010 1.010 43 H -0.010 1.010 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.352 -14.903 -21.443 27.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.027 4.027 3 C -0.184 4.184 4 C -0.190 4.190 5 N -0.198 5.198 6 C -0.122 4.122 7 C -0.161 4.161 8 C -0.111 4.111 9 H 0.152 0.848 10 C 0.302 3.698 11 O -0.453 6.453 12 N -0.368 5.368 13 C 0.008 3.992 14 C -0.138 4.138 15 C -0.014 4.014 16 C -0.580 4.580 17 H 0.086 0.914 18 C -0.202 4.202 19 N -0.577 5.577 20 Si 0.793 3.207 21 H -0.189 1.189 22 H -0.212 1.212 23 H -0.189 1.189 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.131 0.869 36 H 0.095 0.905 37 H 0.251 0.749 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.008 0.992 43 H 0.008 0.992 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.722 -14.349 -21.572 27.035 hybrid contribution -0.839 0.661 1.066 1.509 sum -8.561 -13.688 -20.507 26.099 Atomic orbital electron populations 1.22554 0.94737 1.03253 1.03343 1.21618 0.94299 0.94669 0.92097 1.21679 1.00591 0.95377 1.00800 1.21785 1.01014 1.00633 0.95518 1.68649 1.46281 1.03825 1.01063 1.24022 1.01238 0.91380 0.95600 1.23278 1.04261 0.90804 0.97754 1.23765 0.98020 0.96526 0.92780 0.84794 1.20963 0.86022 0.80453 0.82363 1.90677 1.21817 1.55358 1.77398 1.45938 1.21445 1.50865 1.18583 1.21166 0.95637 0.93060 0.89324 1.21584 0.98253 1.00412 0.93501 1.18941 0.95076 0.93761 0.93629 1.21663 1.03126 1.29961 1.03272 0.91371 1.26052 0.96544 0.95418 1.02164 1.70109 1.20246 1.33481 1.33833 0.85451 0.78654 0.78465 0.78171 1.18915 1.21213 1.18925 0.92377 0.90442 0.90046 0.94222 0.90878 0.95119 0.91130 0.90823 0.93461 0.88875 0.87887 0.86936 0.90541 0.74867 0.93720 0.93790 0.91276 0.91207 0.99151 0.99186 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 7.27 71.98 0.52 -1.66 16 2 C 0.06 1.12 0.72 3.53 0.00 1.12 16 3 C -0.13 -2.90 8.63 71.98 0.62 -2.28 16 4 C -0.13 -1.90 8.38 71.98 0.60 -1.29 16 5 N -0.47 -10.11 5.45 -838.65 -4.57 -14.68 16 6 C 0.01 0.07 6.51 86.41 0.56 0.63 16 7 C -0.12 -1.85 7.84 31.24 0.24 -1.61 16 8 C 0.00 0.03 3.06 44.27 0.14 0.16 16 9 H 0.14 2.05 5.06 -2.39 -0.01 2.03 16 10 C 0.52 15.66 7.22 87.66 0.63 16.29 16 11 O -0.57 -23.52 16.69 -3.03 -0.05 -23.57 16 12 N -0.72 -20.23 5.56 -463.06 -2.57 -22.80 16 13 C 0.13 4.86 5.67 86.38 0.49 5.35 16 14 C -0.10 -3.88 5.27 30.60 0.16 -3.72 16 15 C 0.02 1.25 4.97 29.85 0.15 1.40 16 16 C -0.54 -30.46 9.11 25.60 0.23 -30.22 16 17 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 18 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 19 N -0.94 -57.85 13.28 21.45 0.28 -57.57 16 20 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 21 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 22 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 24 H 0.06 0.77 6.28 -2.38 -0.01 0.76 16 25 H 0.08 0.78 8.12 -2.39 -0.02 0.76 16 26 H 0.08 0.69 5.75 -2.39 -0.01 0.67 16 27 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.07 1.32 8.14 -2.38 -0.02 1.31 16 29 H 0.03 0.82 7.68 -2.39 -0.02 0.80 16 30 H 0.07 0.79 7.09 -2.39 -0.02 0.77 16 31 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.10 0.86 5.54 -2.38 -0.01 0.85 16 35 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 1.47 8.09 -2.39 -0.02 1.45 16 37 H 0.41 8.59 8.47 -92.70 -0.79 7.81 16 38 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 42 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 43 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 44 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -74.44 347.80 0.12 -74.31 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.18 Total: 14.02 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 4.82 Total: -15.61 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -6.86 Total: -95.05 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -74.44 0.12 -74.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896163657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.126 kcal (2) G-P(sol) polarization free energy of solvation -74.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds