Wall clock time and date at job start Mon Mar 30 2020 01:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 N 1.46504 * 109.46883 * 240.00538 * 2 1 3 6 6 C 1.34768 * 120.00311 * 60.00080 * 5 2 1 7 7 O 1.21286 * 120.00005 * 359.97438 * 6 5 2 8 8 C 1.50703 * 119.99979 * 179.97438 * 6 5 2 9 9 H 1.08993 * 109.90590 * 300.69283 * 8 6 5 10 10 C 1.53990 * 109.91578 * 61.80301 * 8 6 5 11 11 C 1.54595 * 105.14141 * 120.57758 * 10 8 6 12 12 C 1.54945 * 102.92129 * 21.95763 * 11 10 8 13 13 N 1.47901 * 109.91542 * 179.59468 * 8 6 5 14 14 C 1.46901 * 111.00167 * 94.80092 * 13 8 6 15 15 C 1.53002 * 109.47498 * 169.99456 * 14 13 8 16 16 C 1.50699 * 109.47317 * 180.02562 * 15 14 13 17 17 H 1.08008 * 119.99790 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00059 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00059 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00165 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47036 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46855 * 120.00066 * 20 18 16 23 23 H 1.48501 * 109.47251 * 240.00110 * 20 18 16 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 28 28 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 31 31 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 33 33 H 0.97006 * 119.99455 * 239.99495 * 5 2 1 34 34 H 1.09002 * 110.30872 * 239.48869 * 10 8 6 35 35 H 1.08995 * 110.31194 * 1.65697 * 10 8 6 36 36 H 1.09005 * 110.72364 * 140.30811 * 11 10 8 37 37 H 1.08993 * 110.72739 * 263.59559 * 11 10 8 38 38 H 1.08998 * 110.66651 * 81.02040 * 12 11 10 39 39 H 1.08997 * 110.66457 * 203.98489 * 12 11 10 40 40 H 1.08992 * 109.47322 * 290.00001 * 14 13 8 41 41 H 1.09008 * 109.46872 * 49.99974 * 14 13 8 42 42 H 1.09000 * 109.46947 * 300.00636 * 15 14 13 43 43 H 1.09008 * 109.46636 * 60.00373 * 15 14 13 44 44 H 0.97000 * 119.99759 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 2.0184 -0.6905 -1.1963 6 6 1.6928 -0.2300 -2.4203 7 8 0.9952 0.7559 -2.5315 8 6 2.1956 -0.9401 -3.6508 9 1 3.2854 -0.9545 -3.6516 10 6 1.6516 -2.3803 -3.6844 11 6 0.8461 -2.4770 -5.0004 12 6 1.4455 -1.3345 -5.8584 13 7 1.6999 -0.2562 -4.8649 14 6 2.6891 0.7063 -5.3680 15 6 2.2573 1.2076 -6.7476 16 6 3.2724 2.1946 -7.2638 17 1 4.1392 2.4395 -6.6677 18 6 3.0947 2.7848 -8.4970 19 7 2.0390 2.4870 -9.2227 20 14 4.3526 4.0088 -9.1367 21 1 5.4390 4.1701 -8.1372 22 1 4.9248 3.5092 -10.4127 23 1 3.6943 5.3195 -9.3689 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 -1.7490 1.2492 31 1 3.1301 -0.7209 1.2493 32 1 1.6767 -0.2075 2.1392 33 1 2.5761 -1.4792 -1.1073 34 1 2.4743 -3.0953 -3.6911 35 1 1.0010 -2.5591 -2.8285 36 1 1.0047 -3.4431 -5.4796 37 1 -0.2146 -2.3058 -4.8168 38 1 2.3780 -1.6523 -6.3247 39 1 0.7318 -1.0056 -6.6136 40 1 2.7582 1.5492 -4.6804 41 1 3.6618 0.2204 -5.4461 42 1 2.1882 0.3647 -7.4351 43 1 1.2847 1.6935 -6.6695 44 1 1.9139 2.9026 -10.0901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932436307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:44 Heat of formation + Delta-G solvation = -44.392514 kcal Electronic energy + Delta-G solvation = -21488.563339 eV Core-core repulsion = 18440.341840 eV Total energy + Delta-G solvation = -3048.221500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.22863 -38.22226 -36.05723 -33.70868 -32.23110 -31.61654 -29.04292 -28.18816 -27.50893 -27.25600 -24.41941 -22.82264 -21.53019 -20.29541 -19.58875 -19.32721 -17.16940 -16.33923 -15.81068 -15.50938 -14.86694 -14.58649 -14.38982 -13.94260 -13.83629 -13.58466 -13.32135 -13.04397 -12.53344 -12.44746 -12.20254 -12.13840 -11.95791 -11.72308 -11.60491 -11.40543 -11.14594 -11.02542 -10.97792 -10.87983 -10.74870 -10.57276 -10.46810 -9.87630 -9.37820 -9.15245 -9.05547 -8.93578 -8.30655 -7.75291 -5.95512 -3.97457 2.97504 3.18162 3.34099 3.41314 3.45601 4.43306 4.55940 4.63291 4.77623 4.82439 4.87204 4.97644 5.08806 5.26965 5.37531 5.40635 5.49234 5.51535 5.66853 5.68808 5.70186 5.75945 5.85322 5.89349 5.92900 5.95918 6.00008 6.25464 6.31833 6.38102 6.38723 6.42457 6.55982 6.69487 6.99117 7.40428 7.50917 7.71767 7.79493 7.93819 8.11766 8.47912 8.58897 9.09426 9.65842 11.16030 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022681 B = 0.004448 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.200214 B = 6293.548865 C = 7093.882177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.171 3.829 3 C -0.165 4.165 4 C -0.153 4.153 5 N -0.735 5.735 6 C 0.523 3.477 7 O -0.503 6.503 8 C 0.044 3.956 9 H 0.071 0.929 10 C -0.120 4.120 11 C -0.124 4.124 12 C 0.042 3.958 13 N -0.492 5.492 14 C 0.058 3.942 15 C 0.026 3.974 16 C -0.519 4.519 17 H 0.054 0.946 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.081 0.919 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.394 0.606 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.019 0.981 42 H 0.018 0.982 43 H 0.026 0.974 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.131 -11.977 18.684 22.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.085 3.915 3 C -0.223 4.223 4 C -0.211 4.211 5 N -0.390 5.390 6 C 0.309 3.691 7 O -0.375 6.375 8 C -0.069 4.069 9 H 0.089 0.911 10 C -0.158 4.158 11 C -0.162 4.162 12 C -0.085 4.085 13 N -0.216 5.216 14 C -0.069 4.069 15 C -0.012 4.012 16 C -0.558 4.558 17 H 0.072 0.928 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.100 0.900 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.228 0.772 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.044 0.956 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.206 -10.870 18.533 21.519 hybrid contribution 1.817 -0.087 -0.504 1.888 sum 0.611 -10.956 18.029 21.106 Atomic orbital electron populations 1.22226 0.94433 1.01945 1.03553 1.20252 0.94324 0.92659 0.84271 1.22235 1.00809 0.95690 1.03579 1.22077 1.01458 1.00610 0.96961 1.46212 1.55045 1.32375 1.05336 1.20560 0.80241 0.84591 0.83741 1.90646 1.35700 1.25021 1.86144 1.22373 0.98610 0.93671 0.92264 0.91135 1.22368 0.99953 0.94073 0.99407 1.22516 1.00207 0.98584 0.94898 1.23221 1.00052 0.90158 0.95101 1.64551 1.42746 1.12566 1.01781 1.22513 0.90617 0.93790 0.99959 1.19138 0.97390 0.96044 0.88593 1.21215 1.07643 1.24566 1.02391 0.92793 1.24985 0.95557 0.96853 0.96909 1.69984 1.27602 1.43587 1.12088 0.86545 0.81547 0.81244 0.78714 1.19798 1.21070 1.20962 0.90016 0.92982 0.92259 0.92224 0.92890 0.90001 0.92126 0.92093 0.91089 0.77239 0.90985 0.91102 0.91141 0.90850 0.93670 0.89227 0.91740 0.96295 0.96398 0.95553 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 8.40 37.16 0.31 -1.54 16 2 C 0.17 1.80 1.06 -131.82 -0.14 1.66 16 3 C -0.17 -1.97 8.40 37.16 0.31 -1.66 16 4 C -0.15 -1.12 8.59 37.16 0.32 -0.80 16 5 N -0.73 -8.27 4.98 -47.60 -0.24 -8.51 16 6 C 0.52 8.10 6.41 -10.99 -0.07 8.03 16 7 O -0.50 -9.91 12.67 5.55 0.07 -9.84 16 8 C 0.04 0.66 2.87 -67.80 -0.19 0.47 16 9 H 0.07 1.02 7.56 -51.93 -0.39 0.63 16 10 C -0.12 -1.40 6.48 -25.38 -0.16 -1.56 16 11 C -0.12 -1.62 7.07 -24.87 -0.18 -1.80 16 12 C 0.04 0.73 5.12 -1.74 -0.01 0.72 16 13 N -0.49 -9.58 4.54 -223.70 -1.02 -10.59 16 14 C 0.06 1.31 4.97 -3.82 -0.02 1.29 16 15 C 0.03 0.69 4.64 -27.88 -0.13 0.57 16 16 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 17 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.42 13.29 55.43 0.74 -26.68 16 20 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 24 H 0.08 1.21 6.17 -51.93 -0.32 0.89 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.27 6.17 -51.93 -0.32 0.95 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.39 3.31 8.45 -40.82 -0.34 2.96 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.76 7.63 -51.93 -0.40 0.36 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.04 0.78 8.00 -51.93 -0.42 0.37 16 39 H 0.09 1.70 7.69 -51.93 -0.40 1.30 16 40 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.02 0.41 7.81 -51.92 -0.41 0.00 16 42 H 0.02 0.49 6.81 -51.93 -0.35 0.14 16 43 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 344.95 15.07 5.20 5.20 Total: -1.00 -33.45 344.95 -8.60 -42.06 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.96 Total: -0.26 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -0.37 Total: -8.50 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: -0.52 Total: -45.78 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.84 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.45 -8.60 -42.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932436307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.337 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds