Wall clock time and date at job start Mon Mar 30 2020 01:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 N 1.46504 * 109.46883 * 240.00538 * 2 1 3 6 6 C 1.34768 * 120.00311 * 60.00080 * 5 2 1 7 7 O 1.21286 * 120.00005 * 359.97438 * 6 5 2 8 8 C 1.50703 * 119.99979 * 179.97438 * 6 5 2 9 9 H 1.08993 * 109.90590 * 300.69283 * 8 6 5 10 10 C 1.53990 * 109.91578 * 61.80301 * 8 6 5 11 11 C 1.54595 * 105.14141 * 120.57758 * 10 8 6 12 12 C 1.54945 * 102.92129 * 21.95763 * 11 10 8 13 13 N 1.47901 * 109.91542 * 179.59468 * 8 6 5 14 14 C 1.46901 * 111.00167 * 94.80092 * 13 8 6 15 15 C 1.53002 * 109.47498 * 169.99456 * 14 13 8 16 16 C 1.50699 * 109.47317 * 180.02562 * 15 14 13 17 17 H 1.08008 * 119.99790 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00059 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00059 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00165 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47036 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46855 * 120.00066 * 20 18 16 23 23 H 1.48501 * 109.47251 * 240.00110 * 20 18 16 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 28 28 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 31 31 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 33 33 H 0.97006 * 119.99455 * 239.99495 * 5 2 1 34 34 H 1.09002 * 110.30872 * 239.48869 * 10 8 6 35 35 H 1.08995 * 110.31194 * 1.65697 * 10 8 6 36 36 H 1.09005 * 110.72364 * 140.30811 * 11 10 8 37 37 H 1.08993 * 110.72739 * 263.59559 * 11 10 8 38 38 H 1.08998 * 110.66651 * 81.02040 * 12 11 10 39 39 H 1.08997 * 110.66457 * 203.98489 * 12 11 10 40 40 H 1.08992 * 109.47322 * 290.00001 * 14 13 8 41 41 H 1.09008 * 109.46872 * 49.99974 * 14 13 8 42 42 H 1.09000 * 109.46947 * 300.00636 * 15 14 13 43 43 H 1.09008 * 109.46636 * 60.00373 * 15 14 13 44 44 H 0.97000 * 119.99759 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 2.0184 -0.6905 -1.1963 6 6 1.6928 -0.2300 -2.4203 7 8 0.9952 0.7559 -2.5315 8 6 2.1956 -0.9401 -3.6508 9 1 3.2854 -0.9545 -3.6516 10 6 1.6516 -2.3803 -3.6844 11 6 0.8461 -2.4770 -5.0004 12 6 1.4455 -1.3345 -5.8584 13 7 1.6999 -0.2562 -4.8649 14 6 2.6891 0.7063 -5.3680 15 6 2.2573 1.2076 -6.7476 16 6 3.2724 2.1946 -7.2638 17 1 4.1392 2.4395 -6.6677 18 6 3.0947 2.7848 -8.4970 19 7 2.0390 2.4870 -9.2227 20 14 4.3526 4.0088 -9.1367 21 1 5.4390 4.1701 -8.1372 22 1 4.9248 3.5092 -10.4127 23 1 3.6943 5.3195 -9.3689 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 -1.7490 1.2492 31 1 3.1301 -0.7209 1.2493 32 1 1.6767 -0.2075 2.1392 33 1 2.5761 -1.4792 -1.1073 34 1 2.4743 -3.0953 -3.6911 35 1 1.0010 -2.5591 -2.8285 36 1 1.0047 -3.4431 -5.4796 37 1 -0.2146 -2.3058 -4.8168 38 1 2.3780 -1.6523 -6.3247 39 1 0.7318 -1.0056 -6.6136 40 1 2.7582 1.5492 -4.6804 41 1 3.6618 0.2204 -5.4461 42 1 2.1882 0.3647 -7.4351 43 1 1.2847 1.6935 -6.6695 44 1 1.9139 2.9026 -10.0901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932436307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:43 Heat of formation + Delta-G solvation = -68.319255 kcal Electronic energy + Delta-G solvation = -21489.600881 eV Core-core repulsion = 18440.341840 eV Total energy + Delta-G solvation = -3049.259041 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.40268 -39.46886 -37.17637 -35.68291 -33.82727 -32.94573 -30.53973 -29.73748 -28.20877 -28.18255 -26.35887 -24.24961 -22.97769 -21.50844 -21.08599 -20.38403 -18.68614 -18.14430 -16.92964 -16.79108 -16.48684 -16.11806 -15.61023 -15.47937 -14.97923 -14.75251 -14.47587 -14.42134 -14.15465 -13.69142 -13.32633 -13.21357 -13.10725 -12.99752 -12.95960 -12.72188 -12.55861 -12.44036 -12.30966 -12.09066 -12.06313 -11.92146 -11.84973 -11.62401 -11.38714 -11.25472 -10.59401 -10.41491 -9.97742 -9.25284 -8.22821 -6.34870 1.37175 1.38908 1.52002 1.79465 2.15407 2.38705 3.10168 3.18067 3.64186 3.65606 3.89011 4.00197 4.05104 4.14267 4.21951 4.29966 4.41295 4.50791 4.63350 4.71739 4.73447 4.79374 4.83970 4.87645 4.90920 4.96851 4.99448 5.00660 5.02934 5.14110 5.24323 5.28343 5.38505 5.41080 5.42921 5.59123 5.73121 5.75632 5.98821 6.07525 6.28058 6.77605 6.81071 7.34169 7.48956 8.89735 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022681 B = 0.004448 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.200214 B = 6293.548865 C = 7093.882177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.166 3.834 3 C -0.164 4.164 4 C -0.144 4.144 5 N -0.714 5.714 6 C 0.520 3.480 7 O -0.555 6.555 8 C 0.038 3.962 9 H 0.084 0.916 10 C -0.107 4.107 11 C -0.114 4.114 12 C 0.037 3.963 13 N -0.519 5.519 14 C 0.080 3.920 15 C 0.037 3.963 16 C -0.546 4.546 17 H 0.058 0.942 18 C 0.002 3.998 19 N -0.931 5.931 20 Si 0.969 3.031 21 H -0.262 1.262 22 H -0.272 1.272 23 H -0.278 1.278 24 H 0.039 0.961 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.037 0.963 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.412 0.588 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.043 0.957 41 H 0.030 0.970 42 H 0.004 0.996 43 H -0.018 1.018 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.617 -13.914 20.675 24.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.080 3.920 3 C -0.222 4.222 4 C -0.202 4.202 5 N -0.369 5.369 6 C 0.306 3.694 7 O -0.432 6.432 8 C -0.074 4.074 9 H 0.101 0.899 10 C -0.145 4.145 11 C -0.152 4.152 12 C -0.090 4.090 13 N -0.243 5.243 14 C -0.048 4.048 15 C 0.000 4.000 16 C -0.585 4.585 17 H 0.076 0.924 18 C -0.196 4.196 19 N -0.571 5.571 20 Si 0.793 3.207 21 H -0.186 1.186 22 H -0.198 1.198 23 H -0.204 1.204 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.249 0.751 34 H 0.127 0.873 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.022 0.978 43 H 0.001 0.999 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.564 -12.858 20.567 24.262 hybrid contribution 1.211 0.523 -1.099 1.717 sum 1.775 -12.334 19.468 23.115 Atomic orbital electron populations 1.22178 0.95080 1.02273 1.02318 1.20427 0.93924 0.92258 0.85348 1.22208 1.00972 0.96713 1.02301 1.22020 1.02077 1.01062 0.95005 1.46049 1.54113 1.32470 1.04302 1.20720 0.79701 0.83957 0.85045 1.90651 1.38255 1.27292 1.86974 1.22531 0.99409 0.95411 0.90039 0.89866 1.22408 1.01108 0.92029 0.98953 1.22488 0.99715 0.97992 0.94983 1.23215 0.99568 0.91190 0.95025 1.64371 1.42269 1.13788 1.03865 1.22049 0.91778 0.94281 0.96716 1.18927 0.94985 0.94985 0.91138 1.21616 1.08238 1.25506 1.03103 0.92418 1.25986 0.97782 0.98831 0.97018 1.70122 1.29570 1.44770 1.12609 0.85345 0.78745 0.78223 0.78391 1.18645 1.19781 1.20409 0.94145 0.91786 0.90611 0.90440 0.92476 0.94336 0.90503 0.91062 0.89844 0.75072 0.87253 0.89480 0.87920 0.91533 0.93738 0.92440 0.93854 0.95226 0.97809 0.99927 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 8.40 71.98 0.60 -2.87 16 2 C 0.17 3.20 1.06 3.60 0.00 3.20 16 3 C -0.16 -3.85 8.40 71.98 0.60 -3.24 16 4 C -0.14 -1.54 8.59 71.98 0.62 -0.92 16 5 N -0.71 -14.71 4.98 -422.92 -2.11 -16.81 16 6 C 0.52 16.01 6.41 87.66 0.56 16.57 16 7 O -0.56 -23.05 12.67 -3.05 -0.04 -23.09 16 8 C 0.04 1.13 2.87 44.31 0.13 1.25 16 9 H 0.08 2.24 7.56 -2.39 -0.02 2.23 16 10 C -0.11 -2.15 6.48 31.47 0.20 -1.95 16 11 C -0.11 -2.77 7.07 31.80 0.22 -2.55 16 12 C 0.04 1.33 5.12 86.60 0.44 1.77 16 13 N -0.52 -20.88 4.54 -861.66 -3.91 -24.79 16 14 C 0.08 3.76 4.97 86.30 0.43 4.19 16 15 C 0.04 2.13 4.64 29.85 0.14 2.27 16 16 C -0.55 -33.02 9.11 25.60 0.23 -32.79 16 17 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 18 C 0.00 0.11 5.46 84.65 0.46 0.57 16 19 N -0.93 -58.86 13.29 21.45 0.28 -58.58 16 20 Si 0.97 45.92 29.54 68.60 2.03 47.95 16 21 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 24 H 0.04 1.23 6.17 -2.39 -0.01 1.22 16 25 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.04 1.25 6.17 -2.39 -0.01 1.24 16 30 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.41 5.45 8.45 -92.70 -0.78 4.66 16 34 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.09 1.52 7.63 -2.39 -0.02 1.50 16 36 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.04 1.56 8.00 -2.39 -0.02 1.54 16 39 H 0.06 2.35 7.69 -2.39 -0.02 2.33 16 40 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.03 1.31 7.81 -2.38 -0.02 1.29 16 42 H 0.00 0.21 6.81 -2.39 -0.02 0.20 16 43 H -0.02 -1.15 8.14 -2.38 -0.02 -1.17 16 44 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -78.39 344.95 1.08 -77.31 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.17 Total: 12.51 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 4.65 Total: -14.48 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -5.73 Total: -100.19 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.04 Total: -23.09 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -78.39 1.08 -77.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932436307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.986 kcal (2) G-P(sol) polarization free energy of solvation -78.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds