Wall clock time and date at job start Mon Mar 30 2020 00:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46934 * 2 1 4 4 C 1.53002 * 109.47129 * 240.00293 * 2 1 3 5 5 C 1.50694 * 109.47502 * 120.00322 * 2 1 3 6 6 O 1.21284 * 120.00109 * 359.97438 * 5 2 1 7 7 N 1.34779 * 120.00199 * 180.02562 * 5 2 1 8 8 C 1.46498 * 120.00024 * 179.97438 * 7 5 2 9 9 H 1.08997 * 109.47107 * 325.00130 * 8 7 5 10 10 C 1.52998 * 109.47215 * 84.99867 * 8 7 5 11 11 C 1.53001 * 109.47375 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46889 * 300.00051 * 11 10 8 13 13 C 1.53002 * 109.47458 * 59.99620 * 12 11 10 14 14 H 1.08997 * 109.46559 * 59.99875 * 13 12 11 15 15 N 1.46490 * 109.47134 * 180.02562 * 13 12 11 16 16 C 1.36935 * 120.00121 * 274.99769 * 15 13 12 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 13 18 18 C 1.38816 * 120.00401 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47055 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.46653 * 299.99639 * 20 18 16 23 23 H 1.48495 * 109.47483 * 60.00002 * 20 18 16 24 24 C 1.53000 * 109.47050 * 204.99919 * 8 7 5 25 25 H 1.09005 * 109.47004 * 299.99222 * 1 2 3 26 26 H 1.08997 * 109.47251 * 59.99545 * 1 2 3 27 27 H 1.09000 * 109.46748 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47180 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47171 * 300.00696 * 3 2 1 30 30 H 1.08999 * 109.46732 * 60.00133 * 3 2 1 31 31 H 1.08993 * 109.47135 * 300.00183 * 4 2 1 32 32 H 1.09005 * 109.46946 * 59.99306 * 4 2 1 33 33 H 1.08997 * 109.47437 * 179.97438 * 4 2 1 34 34 H 0.96995 * 119.99589 * 359.97438 * 7 5 2 35 35 H 1.09007 * 109.46811 * 299.99715 * 10 8 7 36 36 H 1.09001 * 109.47552 * 59.99514 * 10 8 7 37 37 H 1.08996 * 109.46845 * 59.99431 * 11 10 8 38 38 H 1.08993 * 109.47257 * 179.97438 * 11 10 8 39 39 H 1.09007 * 109.46865 * 299.99797 * 12 11 10 40 40 H 1.08996 * 109.47394 * 180.02562 * 12 11 10 41 41 H 0.97000 * 120.00577 * 95.00368 * 15 13 12 42 42 H 0.97001 * 119.99885 * 359.97438 * 19 18 16 43 43 H 1.08993 * 109.47268 * 59.99986 * 24 8 7 44 44 H 1.09007 * 109.46865 * 299.99895 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2303 6 8 1.2444 -1.1710 2.0290 7 7 3.3575 -0.8331 1.4438 8 6 3.8459 -1.5233 2.6402 9 1 3.1732 -1.3244 3.4745 10 6 3.8979 -3.0292 2.3748 11 6 4.4073 -3.7501 3.6245 12 6 5.8096 -3.2442 3.9690 13 6 5.7577 -1.7383 4.2344 14 1 5.0847 -1.5394 5.0683 15 7 7.1005 -1.2540 4.5636 16 6 7.5600 -1.3321 5.8512 17 1 6.9326 -1.7512 6.6239 18 6 8.8322 -0.8727 6.1633 19 7 9.5966 -0.3614 5.2216 20 14 9.4592 -0.9800 7.9196 21 1 10.8354 -0.4263 7.9886 22 1 8.5664 -0.1982 8.8125 23 1 9.4740 -2.3998 8.3542 24 6 5.2483 -1.0173 2.9841 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7488 -1.2494 32 1 1.6766 -0.2073 -2.1393 33 1 3.1300 -0.7208 -1.2496 34 1 3.9878 -0.4644 0.8053 35 1 2.8987 -3.3896 2.1299 36 1 4.5705 -3.2282 1.5405 37 1 3.7343 -3.5510 4.4584 38 1 4.4439 -4.8229 3.4356 39 1 6.4827 -3.4432 3.1349 40 1 6.1728 -3.7581 4.8590 41 1 7.6642 -0.8778 3.8696 42 1 9.2711 -0.3061 4.3095 43 1 5.2113 0.0554 3.1732 44 1 5.9210 -1.2163 2.1498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981475157.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:18 Heat of formation + Delta-G solvation = -60.989588 kcal Electronic energy + Delta-G solvation = -21308.584763 eV Core-core repulsion = 18259.643560 eV Total energy + Delta-G solvation = -3048.941203 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.37908 -38.25225 -35.75107 -34.84506 -33.44410 -31.11790 -29.39365 -27.66068 -27.59606 -27.26932 -23.82580 -23.27204 -21.96320 -20.89823 -19.97687 -19.01094 -17.35153 -16.77563 -16.30147 -15.28935 -15.05505 -14.39798 -14.15326 -14.09749 -13.99545 -13.79496 -13.55995 -13.39458 -12.75376 -12.63518 -12.50115 -12.30074 -12.05546 -12.02628 -11.97592 -11.22959 -11.20752 -11.02659 -10.89137 -10.81908 -10.67738 -10.29023 -10.26342 -10.11042 -9.94006 -9.58529 -9.15660 -8.96288 -8.86626 -7.03709 -6.09910 -3.09625 2.63784 3.14777 3.52467 3.55818 3.73081 4.40466 4.50370 4.60937 4.65732 4.89376 5.00176 5.06441 5.25565 5.27484 5.32687 5.42599 5.49260 5.53590 5.55743 5.60383 5.65073 5.66755 5.67465 5.81001 5.83210 5.86618 5.93223 5.97756 6.05260 6.08232 6.23847 6.29389 6.43638 6.47004 6.59746 6.66478 6.90164 7.05001 7.52209 7.82301 8.23727 8.75914 9.22945 10.09302 10.24209 11.38538 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030993 B = 0.003840 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.204358 B = 7290.096547 C = 7681.425862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.140 4.140 5 C 0.521 3.479 6 O -0.541 6.541 7 N -0.722 5.722 8 C 0.149 3.851 9 H 0.087 0.913 10 C -0.123 4.123 11 C -0.114 4.114 12 C -0.135 4.135 13 C 0.189 3.811 14 H 0.049 0.951 15 N -0.736 5.736 16 C -0.329 4.329 17 H 0.065 0.935 18 C -0.046 4.046 19 N -0.945 5.945 20 Si 1.079 2.921 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.295 1.295 24 C -0.130 4.130 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.397 0.603 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.063 0.937 41 H 0.366 0.634 42 H 0.254 0.746 43 H 0.067 0.933 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.345 -0.370 -13.628 20.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.092 4.092 3 C -0.199 4.199 4 C -0.197 4.197 5 C 0.307 3.693 6 O -0.418 6.418 7 N -0.372 5.372 8 C 0.044 3.956 9 H 0.105 0.895 10 C -0.161 4.161 11 C -0.153 4.153 12 C -0.176 4.176 13 C 0.078 3.922 14 H 0.067 0.933 15 N -0.378 5.378 16 C -0.460 4.460 17 H 0.083 0.917 18 C -0.243 4.243 19 N -0.591 5.591 20 Si 0.910 3.090 21 H -0.211 1.211 22 H -0.223 1.223 23 H -0.223 1.223 24 C -0.169 4.169 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.232 0.768 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.199 0.801 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.723 -0.440 -11.837 18.896 hybrid contribution -0.782 -0.139 -1.546 1.738 sum -15.505 -0.578 -13.383 20.490 Atomic orbital electron populations 1.21648 0.92058 1.02766 1.01935 1.20833 0.98021 0.96479 0.93820 1.21871 1.01359 0.93763 1.02866 1.21860 1.01272 1.00589 0.96016 1.20547 0.82351 0.79271 0.87152 1.90686 1.55369 1.48794 1.46934 1.46174 1.06911 1.58472 1.25683 1.20998 0.95834 0.91464 0.87300 0.89532 1.21871 1.00876 0.94715 0.98680 1.21482 0.97874 0.98918 0.97047 1.22262 0.94709 0.99291 1.01328 1.20043 0.87956 0.90792 0.93381 0.93270 1.42410 1.12744 1.74473 1.08136 1.20048 1.00991 1.38797 0.86162 0.91743 1.25756 0.93176 0.99054 1.06303 1.70889 1.38460 1.47968 1.01738 0.83253 0.76137 0.75761 0.73862 1.21066 1.22272 1.22274 1.22106 0.94129 1.00804 0.99819 0.91936 0.92173 0.91996 0.92020 0.91425 0.91960 0.92068 0.91430 0.92089 0.76843 0.92172 0.92157 0.92153 0.92457 0.92851 0.91865 0.80114 0.93467 0.91459 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 7.76 37.16 0.29 -0.88 16 2 C -0.09 -0.82 0.87 -155.66 -0.14 -0.96 16 3 C -0.14 -1.11 8.37 37.16 0.31 -0.80 16 4 C -0.14 -1.04 8.37 37.16 0.31 -0.72 16 5 C 0.52 6.70 6.45 -10.99 -0.07 6.63 16 6 O -0.54 -9.08 15.64 5.55 0.09 -9.00 16 7 N -0.72 -8.64 4.86 -53.81 -0.26 -8.91 16 8 C 0.15 2.13 2.45 -67.93 -0.17 1.96 16 9 H 0.09 1.42 7.58 -51.93 -0.39 1.03 16 10 C -0.12 -1.70 5.49 -26.73 -0.15 -1.85 16 11 C -0.11 -1.69 5.92 -26.73 -0.16 -1.85 16 12 C -0.14 -2.44 5.50 -26.73 -0.15 -2.59 16 13 C 0.19 3.74 2.77 -67.91 -0.19 3.55 16 14 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 15 N -0.74 -18.25 5.12 -53.41 -0.27 -18.52 16 16 C -0.33 -9.24 9.93 -15.06 -0.15 -9.39 16 17 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 18 C -0.05 -1.32 5.50 -17.43 -0.10 -1.42 16 19 N -0.94 -29.14 13.70 55.49 0.76 -28.38 16 20 Si 1.08 26.01 29.92 -169.99 -5.09 20.93 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 24 C -0.13 -2.07 4.86 -26.70 -0.13 -2.20 16 25 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 28 H 0.06 0.45 7.56 -51.93 -0.39 0.06 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.41 7.57 -51.93 -0.39 0.02 16 34 H 0.40 3.85 7.44 -40.82 -0.30 3.55 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.37 9.30 6.63 -40.82 -0.27 9.03 16 42 H 0.25 7.69 6.77 -40.82 -0.28 7.41 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 LS Contribution 346.31 15.07 5.22 5.22 Total: -1.00 -32.62 346.31 -8.03 -40.64 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -7.99 Total: 8.53 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -0.48 Total: -10.51 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.23 Total: -55.81 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -5.09 Total: 20.93 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.62 -8.03 -40.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981475157.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.347 kcal (2) G-P(sol) polarization free energy of solvation -32.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds