Wall clock time and date at job start Mon Mar 30 2020 00:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46934 * 2 1 4 4 C 1.53002 * 109.47129 * 240.00293 * 2 1 3 5 5 C 1.50694 * 109.47502 * 120.00322 * 2 1 3 6 6 O 1.21284 * 120.00109 * 359.97438 * 5 2 1 7 7 N 1.34779 * 120.00199 * 180.02562 * 5 2 1 8 8 C 1.46498 * 120.00024 * 179.97438 * 7 5 2 9 9 H 1.08997 * 109.47107 * 325.00130 * 8 7 5 10 10 C 1.52998 * 109.47215 * 84.99867 * 8 7 5 11 11 C 1.53001 * 109.47375 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46889 * 300.00051 * 11 10 8 13 13 C 1.53002 * 109.47458 * 59.99620 * 12 11 10 14 14 H 1.08997 * 109.46559 * 59.99875 * 13 12 11 15 15 N 1.46490 * 109.47134 * 180.02562 * 13 12 11 16 16 C 1.36935 * 120.00121 * 274.99769 * 15 13 12 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 13 18 18 C 1.38816 * 120.00401 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47055 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.46653 * 299.99639 * 20 18 16 23 23 H 1.48495 * 109.47483 * 60.00002 * 20 18 16 24 24 C 1.53000 * 109.47050 * 204.99919 * 8 7 5 25 25 H 1.09005 * 109.47004 * 299.99222 * 1 2 3 26 26 H 1.08997 * 109.47251 * 59.99545 * 1 2 3 27 27 H 1.09000 * 109.46748 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47180 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47171 * 300.00696 * 3 2 1 30 30 H 1.08999 * 109.46732 * 60.00133 * 3 2 1 31 31 H 1.08993 * 109.47135 * 300.00183 * 4 2 1 32 32 H 1.09005 * 109.46946 * 59.99306 * 4 2 1 33 33 H 1.08997 * 109.47437 * 179.97438 * 4 2 1 34 34 H 0.96995 * 119.99589 * 359.97438 * 7 5 2 35 35 H 1.09007 * 109.46811 * 299.99715 * 10 8 7 36 36 H 1.09001 * 109.47552 * 59.99514 * 10 8 7 37 37 H 1.08996 * 109.46845 * 59.99431 * 11 10 8 38 38 H 1.08993 * 109.47257 * 179.97438 * 11 10 8 39 39 H 1.09007 * 109.46865 * 299.99797 * 12 11 10 40 40 H 1.08996 * 109.47394 * 180.02562 * 12 11 10 41 41 H 0.97000 * 120.00577 * 95.00368 * 15 13 12 42 42 H 0.97001 * 119.99885 * 359.97438 * 19 18 16 43 43 H 1.08993 * 109.47268 * 59.99986 * 24 8 7 44 44 H 1.09007 * 109.46865 * 299.99895 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2303 6 8 1.2444 -1.1710 2.0290 7 7 3.3575 -0.8331 1.4438 8 6 3.8459 -1.5233 2.6402 9 1 3.1732 -1.3244 3.4745 10 6 3.8979 -3.0292 2.3748 11 6 4.4073 -3.7501 3.6245 12 6 5.8096 -3.2442 3.9690 13 6 5.7577 -1.7383 4.2344 14 1 5.0847 -1.5394 5.0683 15 7 7.1005 -1.2540 4.5636 16 6 7.5600 -1.3321 5.8512 17 1 6.9326 -1.7512 6.6239 18 6 8.8322 -0.8727 6.1633 19 7 9.5966 -0.3614 5.2216 20 14 9.4592 -0.9800 7.9196 21 1 10.8354 -0.4263 7.9886 22 1 8.5664 -0.1982 8.8125 23 1 9.4740 -2.3998 8.3542 24 6 5.2483 -1.0173 2.9841 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7488 -1.2494 32 1 1.6766 -0.2073 -2.1393 33 1 3.1300 -0.7208 -1.2496 34 1 3.9878 -0.4644 0.8053 35 1 2.8987 -3.3896 2.1299 36 1 4.5705 -3.2282 1.5405 37 1 3.7343 -3.5510 4.4584 38 1 4.4439 -4.8229 3.4356 39 1 6.4827 -3.4432 3.1349 40 1 6.1728 -3.7581 4.8590 41 1 7.6642 -0.8778 3.8696 42 1 9.2711 -0.3061 4.3095 43 1 5.2113 0.0554 3.1732 44 1 5.9210 -1.2163 2.1498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981475157.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:17 Heat of formation + Delta-G solvation = -82.044013 kcal Electronic energy + Delta-G solvation = -21309.497751 eV Core-core repulsion = 18259.643560 eV Total energy + Delta-G solvation = -3049.854191 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.43236 -39.59294 -36.71598 -36.42775 -34.90634 -32.89679 -30.71911 -29.26118 -28.22434 -28.00443 -25.66129 -24.56241 -23.30226 -22.23794 -21.21800 -20.18519 -19.34587 -17.73191 -17.57982 -16.60300 -16.17818 -15.99368 -15.69189 -15.36887 -15.22777 -15.03592 -14.80966 -14.48874 -14.16545 -13.66055 -13.43758 -13.30572 -13.06533 -12.89760 -12.84628 -12.67276 -12.63549 -12.28807 -12.17102 -11.93143 -11.91257 -11.86367 -11.74599 -11.67186 -11.55576 -11.21168 -10.88853 -10.61953 -10.08170 -9.12228 -8.38823 -5.32446 1.57996 1.63151 1.67449 1.83949 2.13070 2.70855 3.39503 3.49594 3.58664 3.76226 3.82739 3.92717 3.94871 4.10472 4.20989 4.26652 4.34829 4.42821 4.46764 4.57814 4.65508 4.70436 4.71855 4.81935 4.90849 4.94276 4.94389 4.99737 5.04157 5.07898 5.11956 5.21898 5.26163 5.32768 5.34191 5.40309 5.45169 5.55195 5.61543 6.51010 6.54806 7.10297 7.24473 8.00527 8.11357 9.13400 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030993 B = 0.003840 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.204358 B = 7290.096547 C = 7681.425862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.083 4.083 3 C -0.140 4.140 4 C -0.137 4.137 5 C 0.516 3.484 6 O -0.585 6.585 7 N -0.712 5.712 8 C 0.158 3.842 9 H 0.063 0.937 10 C -0.114 4.114 11 C -0.106 4.106 12 C -0.125 4.125 13 C 0.182 3.818 14 H 0.031 0.969 15 N -0.748 5.748 16 C -0.330 4.330 17 H 0.062 0.938 18 C -0.102 4.102 19 N -0.975 5.975 20 Si 1.125 2.875 21 H -0.292 1.292 22 H -0.280 1.280 23 H -0.279 1.279 24 C -0.114 4.114 25 H 0.044 0.956 26 H 0.087 0.913 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.412 0.588 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.039 0.961 41 H 0.361 0.639 42 H 0.245 0.755 43 H 0.059 0.941 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.988 -0.499 -15.180 22.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.086 4.086 3 C -0.197 4.197 4 C -0.195 4.195 5 C 0.304 3.696 6 O -0.465 6.465 7 N -0.363 5.363 8 C 0.052 3.948 9 H 0.081 0.919 10 C -0.153 4.153 11 C -0.145 4.145 12 C -0.165 4.165 13 C 0.073 3.927 14 H 0.049 0.951 15 N -0.389 5.389 16 C -0.461 4.461 17 H 0.080 0.920 18 C -0.294 4.294 19 N -0.623 5.623 20 Si 0.950 3.050 21 H -0.218 1.218 22 H -0.206 1.206 23 H -0.205 1.205 24 C -0.153 4.153 25 H 0.063 0.937 26 H 0.106 0.894 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.248 0.752 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.193 0.807 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.403 -0.579 -13.427 20.442 hybrid contribution -0.661 -0.102 -1.078 1.268 sum -16.063 -0.681 -14.505 21.654 Atomic orbital electron populations 1.21663 0.92167 1.02106 1.02424 1.20874 0.97911 0.97105 0.92717 1.21894 1.01844 0.92613 1.03368 1.21876 1.01890 1.00118 0.95572 1.21302 0.81943 0.78597 0.87777 1.90668 1.56399 1.50724 1.48709 1.46020 1.07215 1.58026 1.25015 1.20704 0.94066 0.92241 0.87750 0.91879 1.21791 1.01184 0.93761 0.98523 1.21412 0.95439 1.00189 0.97471 1.22066 0.96795 0.97349 1.00279 1.20249 0.85433 0.92423 0.94599 0.95071 1.42574 1.14415 1.74870 1.07062 1.20344 1.00916 1.37372 0.87498 0.92021 1.27114 0.93882 0.99117 1.09257 1.70992 1.39244 1.50263 1.01798 0.82658 0.75405 0.76730 0.70215 1.21768 1.20606 1.20504 1.21881 0.95284 0.99787 0.98316 0.93665 0.89421 0.93259 0.91275 0.89067 0.93360 0.92823 0.89204 0.91133 0.75158 0.92082 0.90588 0.92608 0.90398 0.92715 0.94250 0.80699 0.94461 0.92240 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 7.76 71.98 0.56 -1.60 16 2 C -0.08 -1.37 0.87 -52.93 -0.05 -1.42 16 3 C -0.14 -1.86 8.37 71.98 0.60 -1.25 16 4 C -0.14 -1.61 8.37 71.98 0.60 -1.01 16 5 C 0.52 12.77 6.45 87.65 0.56 13.33 16 6 O -0.59 -19.71 15.64 -3.04 -0.05 -19.76 16 7 N -0.71 -15.96 4.86 -442.54 -2.15 -18.12 16 8 C 0.16 4.38 2.45 44.99 0.11 4.49 16 9 H 0.06 2.09 7.58 -2.39 -0.02 2.07 16 10 C -0.11 -2.95 5.49 30.59 0.17 -2.78 16 11 C -0.11 -3.01 5.92 30.59 0.18 -2.83 16 12 C -0.12 -4.44 5.50 30.59 0.17 -4.27 16 13 C 0.18 7.24 2.77 45.01 0.12 7.37 16 14 H 0.03 1.35 8.08 -2.39 -0.02 1.33 16 15 N -0.75 -37.57 5.12 -322.88 -1.65 -39.22 16 16 C -0.33 -18.72 9.93 84.03 0.83 -17.88 16 17 H 0.06 3.46 7.83 -2.91 -0.02 3.44 16 18 C -0.10 -5.97 5.50 84.86 0.47 -5.50 16 19 N -0.97 -60.86 13.70 21.65 0.30 -60.56 16 20 Si 1.12 52.43 29.92 68.60 2.05 54.48 16 21 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 C -0.11 -3.56 4.86 30.61 0.15 -3.41 16 25 H 0.04 0.92 8.10 -2.38 -0.02 0.90 16 26 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 28 H 0.07 0.82 7.56 -2.39 -0.02 0.80 16 29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.07 0.70 7.57 -2.39 -0.02 0.68 16 34 H 0.41 6.97 7.44 -92.71 -0.69 6.28 16 35 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 40 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.36 18.65 6.63 -92.71 -0.61 18.03 16 42 H 0.24 15.13 6.77 -92.71 -0.63 14.50 16 43 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 Total: -1.00 -71.42 346.31 2.78 -68.64 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: -0.20 Total: 31.30 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: 4.49 Total: -16.77 kcal Atomic # 7 Polarization: -114.39 SS G_CDS: -3.51 Total: -117.90 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.05 Total: -19.76 kcal Atomic # 14 Polarization: 52.43 SS G_CDS: 2.05 Total: 54.48 kcal Total: -71.42 2.78 -68.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981475157.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.403 kcal (2) G-P(sol) polarization free energy of solvation -71.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds