Wall clock time and date at job start Mon Mar 30 2020 00:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 6 6 O 1.21282 * 120.00011 * 0.02562 * 5 2 1 7 7 N 1.34777 * 120.00369 * 180.02562 * 5 2 1 8 8 C 1.46505 * 120.00115 * 180.02562 * 7 5 2 9 9 H 1.08993 * 109.46761 * 324.99835 * 8 7 5 10 10 C 1.52997 * 109.47044 * 84.99797 * 8 7 5 11 11 C 1.53005 * 109.47038 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47056 * 300.00229 * 11 10 8 13 13 C 1.53005 * 109.47537 * 59.99775 * 12 11 10 14 14 H 1.08992 * 109.47676 * 179.97438 * 13 12 11 15 15 N 1.46500 * 109.46865 * 59.99601 * 13 12 11 16 16 C 1.36942 * 120.00087 * 85.00100 * 15 13 12 17 17 H 1.08001 * 119.99673 * 0.02562 * 16 15 13 18 18 C 1.38813 * 120.00080 * 179.97438 * 16 15 13 19 19 N 1.31621 * 120.00094 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99710 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47223 * 60.00565 * 20 18 16 22 22 H 1.48501 * 109.46864 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47315 * 299.99953 * 20 18 16 24 24 C 1.52994 * 109.46845 * 204.99901 * 8 7 5 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 31 31 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 32 32 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 34 34 H 0.97003 * 119.99640 * 0.02562 * 7 5 2 35 35 H 1.09000 * 109.47256 * 300.00220 * 10 8 7 36 36 H 1.09006 * 109.47005 * 60.00297 * 10 8 7 37 37 H 1.08997 * 109.46847 * 180.02562 * 11 10 8 38 38 H 1.09002 * 109.46571 * 59.99938 * 11 10 8 39 39 H 1.08997 * 109.47673 * 299.99849 * 12 11 10 40 40 H 1.09000 * 109.47399 * 179.97438 * 12 11 10 41 41 H 0.97006 * 120.00226 * 265.00637 * 15 13 12 42 42 H 0.96994 * 120.00051 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.47477 * 299.99870 * 24 8 7 44 44 H 1.09005 * 109.47440 * 60.00144 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0324 -0.7105 -1.2304 6 8 1.2443 -1.1710 -2.0289 7 7 3.3575 -0.8341 -1.4434 8 6 3.8458 -1.5243 -2.6398 9 1 3.1730 -2.3459 -2.8853 10 6 3.8980 -0.5406 -3.8105 11 6 4.4086 -1.2613 -5.0598 12 6 5.8109 -1.8120 -4.7935 13 6 5.7588 -2.7957 -3.6228 14 1 6.7578 -3.1884 -3.4334 15 7 4.8549 -3.9003 -3.9530 16 6 5.3182 -4.9748 -4.6644 17 1 6.3500 -5.0081 -4.9816 18 6 4.4618 -6.0217 -4.9768 19 7 3.2045 -5.9813 -4.5898 20 14 5.0940 -7.4878 -5.9466 21 1 6.1977 -8.1389 -5.1961 22 1 3.9905 -8.4608 -6.1483 23 1 5.5961 -7.0288 -7.2666 24 6 5.2481 -2.0754 -2.3739 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 -1.7488 1.2493 32 1 3.1300 -0.7207 1.2495 33 1 1.6766 -0.2073 2.1393 34 1 3.9878 -0.4660 -0.8045 35 1 2.8990 -0.1479 -3.9999 36 1 4.5709 0.2811 -3.5649 37 1 4.4462 -0.5603 -5.8937 38 1 3.7361 -2.0831 -5.3055 39 1 6.4835 -0.9902 -4.5478 40 1 6.1746 -2.3258 -5.6834 41 1 3.9282 -3.8705 -3.6679 42 1 2.6060 -6.7127 -4.8084 43 1 5.9210 -1.2538 -2.1283 44 1 5.2109 -2.7763 -1.5398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981475161.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:20 Heat of formation + Delta-G solvation = -56.236087 kcal Electronic energy + Delta-G solvation = -21772.978861 eV Core-core repulsion = 18724.243785 eV Total energy + Delta-G solvation = -3048.735076 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.16728 -38.19964 -35.54895 -34.40527 -32.92839 -30.89555 -29.20881 -27.98885 -27.51279 -27.13561 -23.74121 -23.26587 -21.84012 -21.10817 -19.50039 -18.27909 -17.23862 -16.66021 -15.89893 -15.05498 -14.76842 -14.59359 -14.00419 -13.93587 -13.82121 -13.54121 -13.35610 -13.04312 -12.49759 -12.43761 -12.24039 -12.03837 -11.85054 -11.83286 -11.72985 -11.34750 -11.07267 -11.05037 -10.83634 -10.76948 -10.68038 -10.18335 -10.13288 -10.03563 -9.78975 -9.48045 -9.26611 -8.85190 -8.65218 -6.89507 -5.69536 -2.98797 2.89275 3.37897 3.47548 3.51843 3.53247 4.57909 4.64129 4.65864 4.77042 5.09936 5.22646 5.28389 5.37212 5.45772 5.54275 5.54734 5.64969 5.67866 5.74555 5.75119 5.76958 5.82024 5.89338 5.92790 5.97080 6.08482 6.13430 6.16759 6.23475 6.24398 6.44657 6.48668 6.68169 6.77391 6.86811 6.90031 7.07125 7.15559 7.74873 7.76419 8.48340 8.50532 9.59255 10.17358 10.51582 11.52659 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024191 B = 0.004837 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.188822 B = 5787.374991 C = 6326.682015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 C -0.138 4.138 4 C -0.140 4.140 5 C 0.517 3.483 6 O -0.532 6.532 7 N -0.724 5.724 8 C 0.145 3.855 9 H 0.098 0.902 10 C -0.119 4.119 11 C -0.110 4.110 12 C -0.135 4.135 13 C 0.179 3.821 14 H 0.050 0.950 15 N -0.721 5.721 16 C -0.240 4.240 17 H 0.069 0.931 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.904 3.096 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.287 1.287 24 C -0.127 4.127 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.393 0.607 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.078 0.922 39 H 0.042 0.958 40 H 0.061 0.939 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.059 0.941 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.619 15.908 10.831 19.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.091 4.091 3 C -0.196 4.196 4 C -0.198 4.198 5 C 0.303 3.697 6 O -0.408 6.408 7 N -0.374 5.374 8 C 0.041 3.959 9 H 0.116 0.884 10 C -0.158 4.158 11 C -0.148 4.148 12 C -0.175 4.175 13 C 0.068 3.932 14 H 0.068 0.932 15 N -0.364 5.364 16 C -0.371 4.371 17 H 0.087 0.913 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.214 1.214 24 C -0.166 4.166 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.226 0.774 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.122 15.411 10.160 18.459 hybrid contribution 0.355 -0.641 -0.217 0.764 sum 0.476 14.770 9.943 17.811 Atomic orbital electron populations 1.21651 0.92139 1.02982 1.01716 1.20826 0.98011 0.96258 0.94046 1.21847 1.01099 0.94008 1.02635 1.21860 1.01173 1.00854 0.95879 1.20506 0.82518 0.79611 0.87094 1.90738 1.55243 1.47839 1.46945 1.46178 1.06780 1.58920 1.25562 1.21045 0.96310 0.94980 0.83580 0.88418 1.21832 1.00591 0.97743 0.95595 1.21358 0.98164 0.99712 0.95546 1.22174 0.95805 0.98358 1.01183 1.20149 0.94353 0.88250 0.90428 0.93176 1.42507 1.10012 1.18142 1.65726 1.19184 0.95026 0.96173 1.26734 0.91304 1.24729 0.95753 0.98760 1.01587 1.69659 1.03965 1.33230 1.51036 0.86313 0.77372 0.82779 0.79966 1.21380 1.21780 1.21357 1.22058 0.94813 0.99588 1.00131 0.91797 0.91987 0.92332 0.91605 0.92226 0.92109 0.91851 0.92169 0.91619 0.77354 0.92426 0.92915 0.93367 0.90361 0.93938 0.92046 0.78023 0.93465 0.92185 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 7.76 37.16 0.29 -1.13 16 2 C -0.09 -0.96 0.87 -155.66 -0.14 -1.09 16 3 C -0.14 -1.16 8.37 37.16 0.31 -0.85 16 4 C -0.14 -1.28 8.37 37.16 0.31 -0.97 16 5 C 0.52 7.84 6.45 -10.99 -0.07 7.77 16 6 O -0.53 -10.70 15.64 5.56 0.09 -10.61 16 7 N -0.72 -9.92 4.86 -53.81 -0.26 -10.18 16 8 C 0.14 2.42 2.28 -67.93 -0.16 2.27 16 9 H 0.10 2.11 5.94 -51.93 -0.31 1.80 16 10 C -0.12 -1.92 5.49 -26.73 -0.15 -2.07 16 11 C -0.11 -1.96 5.77 -26.73 -0.15 -2.11 16 12 C -0.13 -2.40 5.61 -26.73 -0.15 -2.55 16 13 C 0.18 3.48 3.10 -67.95 -0.21 3.27 16 14 H 0.05 0.98 8.08 -51.93 -0.42 0.57 16 15 N -0.72 -17.90 4.28 -53.45 -0.23 -18.13 16 16 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -28.72 13.06 55.49 0.72 -27.99 16 20 Si 0.90 22.66 29.55 -169.99 -5.02 17.63 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 C -0.13 -2.03 5.07 -26.76 -0.14 -2.17 16 25 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 26 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.44 7.57 -51.93 -0.39 0.04 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.49 7.56 -51.93 -0.39 0.09 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.39 4.11 7.44 -40.82 -0.30 3.81 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.08 1.69 7.60 -51.93 -0.39 1.30 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.38 10.37 6.06 -40.82 -0.25 10.12 16 42 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 343.58 15.07 5.18 5.18 Total: -1.00 -32.35 343.58 -7.94 -40.29 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -7.92 Total: 10.68 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -0.49 Total: -6.86 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.23 Total: -56.31 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.35 -7.94 -40.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981475161.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.946 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds