Wall clock time and date at job start Mon Mar 30 2020 00:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 6 6 O 1.21282 * 120.00011 * 0.02562 * 5 2 1 7 7 N 1.34777 * 120.00369 * 180.02562 * 5 2 1 8 8 C 1.46505 * 120.00115 * 180.02562 * 7 5 2 9 9 H 1.08993 * 109.46761 * 324.99835 * 8 7 5 10 10 C 1.52997 * 109.47044 * 84.99797 * 8 7 5 11 11 C 1.53005 * 109.47038 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47056 * 300.00229 * 11 10 8 13 13 C 1.53005 * 109.47537 * 59.99775 * 12 11 10 14 14 H 1.08992 * 109.47676 * 179.97438 * 13 12 11 15 15 N 1.46500 * 109.46865 * 59.99601 * 13 12 11 16 16 C 1.36942 * 120.00087 * 85.00100 * 15 13 12 17 17 H 1.08001 * 119.99673 * 0.02562 * 16 15 13 18 18 C 1.38813 * 120.00080 * 179.97438 * 16 15 13 19 19 N 1.31621 * 120.00094 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99710 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47223 * 60.00565 * 20 18 16 22 22 H 1.48501 * 109.46864 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47315 * 299.99953 * 20 18 16 24 24 C 1.52994 * 109.46845 * 204.99901 * 8 7 5 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 31 31 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 32 32 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 34 34 H 0.97003 * 119.99640 * 0.02562 * 7 5 2 35 35 H 1.09000 * 109.47256 * 300.00220 * 10 8 7 36 36 H 1.09006 * 109.47005 * 60.00297 * 10 8 7 37 37 H 1.08997 * 109.46847 * 180.02562 * 11 10 8 38 38 H 1.09002 * 109.46571 * 59.99938 * 11 10 8 39 39 H 1.08997 * 109.47673 * 299.99849 * 12 11 10 40 40 H 1.09000 * 109.47399 * 179.97438 * 12 11 10 41 41 H 0.97006 * 120.00226 * 265.00637 * 15 13 12 42 42 H 0.96994 * 120.00051 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.47477 * 299.99870 * 24 8 7 44 44 H 1.09005 * 109.47440 * 60.00144 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0324 -0.7105 -1.2304 6 8 1.2443 -1.1710 -2.0289 7 7 3.3575 -0.8341 -1.4434 8 6 3.8458 -1.5243 -2.6398 9 1 3.1730 -2.3459 -2.8853 10 6 3.8980 -0.5406 -3.8105 11 6 4.4086 -1.2613 -5.0598 12 6 5.8109 -1.8120 -4.7935 13 6 5.7588 -2.7957 -3.6228 14 1 6.7578 -3.1884 -3.4334 15 7 4.8549 -3.9003 -3.9530 16 6 5.3182 -4.9748 -4.6644 17 1 6.3500 -5.0081 -4.9816 18 6 4.4618 -6.0217 -4.9768 19 7 3.2045 -5.9813 -4.5898 20 14 5.0940 -7.4878 -5.9466 21 1 6.1977 -8.1389 -5.1961 22 1 3.9905 -8.4608 -6.1483 23 1 5.5961 -7.0288 -7.2666 24 6 5.2481 -2.0754 -2.3739 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 -1.7488 1.2493 32 1 3.1300 -0.7207 1.2495 33 1 1.6766 -0.2073 2.1393 34 1 3.9878 -0.4660 -0.8045 35 1 2.8990 -0.1479 -3.9999 36 1 4.5709 0.2811 -3.5649 37 1 4.4462 -0.5603 -5.8937 38 1 3.7361 -2.0831 -5.3055 39 1 6.4835 -0.9902 -4.5478 40 1 6.1746 -2.3258 -5.6834 41 1 3.9282 -3.8705 -3.6679 42 1 2.6060 -6.7127 -4.8084 43 1 5.9210 -1.2538 -2.1283 44 1 5.2109 -2.7763 -1.5398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981475161.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:20 Heat of formation + Delta-G solvation = -78.058494 kcal Electronic energy + Delta-G solvation = -21773.925151 eV Core-core repulsion = 18724.243785 eV Total energy + Delta-G solvation = -3049.681366 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.38883 -39.61209 -36.57872 -36.01194 -34.63791 -32.69672 -30.64401 -29.65462 -28.18306 -27.98982 -25.70724 -24.53794 -23.30652 -22.42871 -20.76169 -19.68115 -19.22532 -17.72981 -17.29670 -16.54552 -16.22014 -16.00573 -15.39234 -15.32387 -15.21296 -14.90144 -14.71304 -14.39854 -13.73173 -13.43908 -13.43476 -13.26498 -13.02854 -12.90539 -12.82140 -12.78940 -12.61532 -12.61416 -12.19404 -12.16701 -11.88776 -11.83134 -11.81539 -11.56338 -11.41363 -11.16473 -10.81756 -10.54021 -9.97573 -8.95892 -7.90609 -5.18607 1.45451 1.48899 1.54894 1.70927 2.22859 2.57862 3.42498 3.62759 3.77027 3.86073 3.91814 3.98047 4.07411 4.19323 4.30719 4.37316 4.45797 4.58398 4.69922 4.71977 4.75332 4.76413 4.81141 4.84179 4.95941 4.96334 5.02068 5.02916 5.09469 5.19564 5.25790 5.31253 5.35815 5.37934 5.43763 5.48763 5.54253 5.66185 5.67089 6.30987 6.64961 7.36263 7.36983 8.16226 8.36630 9.33006 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024191 B = 0.004837 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.188822 B = 5787.374991 C = 6326.682015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.082 4.082 3 C -0.134 4.134 4 C -0.138 4.138 5 C 0.508 3.492 6 O -0.593 6.593 7 N -0.708 5.708 8 C 0.151 3.849 9 H 0.038 0.962 10 C -0.108 4.108 11 C -0.107 4.107 12 C -0.125 4.125 13 C 0.166 3.834 14 H 0.055 0.945 15 N -0.735 5.735 16 C -0.233 4.233 17 H 0.079 0.921 18 C -0.081 4.081 19 N -0.975 5.975 20 Si 0.970 3.030 21 H -0.275 1.275 22 H -0.301 1.301 23 H -0.279 1.279 24 C -0.114 4.114 25 H 0.038 0.962 26 H 0.045 0.955 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.414 0.586 35 H 0.038 0.962 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.025 0.975 39 H 0.087 0.913 40 H 0.039 0.961 41 H 0.369 0.631 42 H 0.247 0.753 43 H 0.109 0.891 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.221 18.527 12.550 22.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.085 4.085 3 C -0.191 4.191 4 C -0.195 4.195 5 C 0.296 3.704 6 O -0.473 6.473 7 N -0.359 5.359 8 C 0.046 3.954 9 H 0.057 0.943 10 C -0.146 4.146 11 C -0.145 4.145 12 C -0.165 4.165 13 C 0.058 3.942 14 H 0.073 0.927 15 N -0.375 5.375 16 C -0.365 4.365 17 H 0.097 0.903 18 C -0.273 4.273 19 N -0.627 5.627 20 Si 0.800 3.200 21 H -0.201 1.201 22 H -0.228 1.228 23 H -0.205 1.205 24 C -0.152 4.152 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.252 0.748 35 H 0.057 0.943 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.044 0.956 39 H 0.105 0.895 40 H 0.058 0.942 41 H 0.202 0.798 42 H 0.056 0.944 43 H 0.128 0.872 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.813 18.084 11.912 21.837 hybrid contribution -0.429 -1.386 -0.736 1.627 sum 2.384 16.699 11.176 20.234 Atomic orbital electron populations 1.21681 0.92758 1.01617 1.02530 1.20877 0.97560 0.97755 0.92305 1.21862 1.02200 0.91617 1.03452 1.21889 1.02165 0.99656 0.95838 1.21467 0.82330 0.78785 0.87803 1.90719 1.56774 1.50440 1.49382 1.45953 1.06951 1.58023 1.24969 1.20719 0.95638 0.93872 0.85204 0.94349 1.21727 1.00430 0.98163 0.94292 1.21293 0.97353 0.98569 0.97291 1.22050 0.96195 0.98950 0.99321 1.20506 0.93492 0.87534 0.92701 0.92727 1.42754 1.10143 1.19208 1.65444 1.19643 0.95193 0.96488 1.25152 0.90335 1.25550 0.96006 1.01978 1.03746 1.69858 1.05421 1.33913 1.53485 0.85248 0.76610 0.79298 0.78857 1.20142 1.22769 1.20493 1.21936 0.94804 1.00560 0.97929 0.94324 0.93593 0.88988 0.88965 0.90466 0.93165 0.94054 0.90602 0.88754 0.74823 0.94273 0.88906 0.91422 0.95611 0.89462 0.94169 0.79810 0.94418 0.87231 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 7.76 71.98 0.56 -2.25 16 2 C -0.08 -1.65 0.87 -52.93 -0.05 -1.70 16 3 C -0.13 -1.78 8.37 71.98 0.60 -1.18 16 4 C -0.14 -2.17 8.37 71.98 0.60 -1.57 16 5 C 0.51 15.52 6.45 87.66 0.56 16.09 16 6 O -0.59 -25.47 15.64 -3.04 -0.05 -25.52 16 7 N -0.71 -18.44 4.86 -442.55 -2.15 -20.59 16 8 C 0.15 5.02 2.28 44.99 0.10 5.12 16 9 H 0.04 1.78 5.94 -2.39 -0.01 1.76 16 10 C -0.11 -3.34 5.49 30.60 0.17 -3.17 16 11 C -0.11 -3.78 5.77 30.59 0.18 -3.60 16 12 C -0.13 -4.20 5.61 30.59 0.17 -4.03 16 13 C 0.17 6.27 3.10 44.98 0.14 6.41 16 14 H 0.05 2.03 8.08 -2.39 -0.02 2.01 16 15 N -0.73 -37.54 4.28 -323.01 -1.38 -38.92 16 16 C -0.23 -13.12 9.93 84.03 0.83 -12.28 16 17 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 18 C -0.08 -4.83 5.50 84.86 0.47 -4.36 16 19 N -0.98 -63.22 13.06 21.65 0.28 -62.94 16 20 Si 0.97 47.73 29.55 68.60 2.03 49.76 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 24 C -0.11 -3.39 5.07 30.58 0.16 -3.23 16 25 H 0.04 1.02 8.10 -2.39 -0.02 1.00 16 26 H 0.04 1.13 8.10 -2.39 -0.02 1.11 16 27 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.08 0.77 7.57 -2.39 -0.02 0.75 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.95 7.56 -2.39 -0.02 0.93 16 33 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.41 7.18 7.44 -92.71 -0.69 6.49 16 35 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.02 1.16 7.60 -2.39 -0.02 1.15 16 39 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.37 21.14 6.06 -92.70 -0.56 20.58 16 42 H 0.25 15.68 8.31 -92.71 -0.77 14.91 16 43 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 44 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -77.13 343.58 2.94 -74.19 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: -0.28 Total: 33.79 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 4.50 Total: -9.76 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -3.25 Total: -122.45 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.05 Total: -25.52 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -77.13 2.94 -74.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981475161.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.869 kcal (2) G-P(sol) polarization free energy of solvation -77.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds