Wall clock time and date at job start Mon Mar 30 2020 00:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46800 * 2 1 4 4 C 1.52996 * 109.47199 * 239.99549 * 2 1 3 5 5 C 1.50706 * 109.46684 * 119.99563 * 2 1 3 6 6 O 1.21277 * 119.99949 * 0.02562 * 5 2 1 7 7 N 1.34774 * 119.99740 * 180.02562 * 5 2 1 8 8 C 1.46496 * 120.00256 * 180.02562 * 7 5 2 9 9 H 1.09001 * 109.47059 * 35.00189 * 8 7 5 10 10 C 1.52997 * 109.46941 * 275.00029 * 8 7 5 11 11 C 1.53006 * 109.47164 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47127 * 59.99836 * 11 10 8 13 13 C 1.53000 * 109.47060 * 300.00449 * 12 11 10 14 14 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 15 15 N 1.46499 * 109.46840 * 180.02562 * 13 12 11 16 16 C 1.36940 * 120.00443 * 85.00012 * 15 13 12 17 17 H 1.08003 * 119.99488 * 359.97438 * 16 15 13 18 18 C 1.38806 * 120.00471 * 180.02562 * 16 15 13 19 19 N 1.31627 * 119.99952 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00459 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47121 * 89.99605 * 20 18 16 22 22 H 1.48496 * 109.47214 * 210.00221 * 20 18 16 23 23 H 1.48505 * 109.46587 * 329.99840 * 20 18 16 24 24 C 1.52996 * 109.47328 * 60.00126 * 13 12 11 25 25 H 1.08997 * 109.47005 * 300.00133 * 1 2 3 26 26 H 1.09002 * 109.47088 * 60.00270 * 1 2 3 27 27 H 1.09003 * 109.47066 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46753 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.46857 * 299.99234 * 3 2 1 30 30 H 1.08996 * 109.46992 * 59.99871 * 3 2 1 31 31 H 1.08990 * 109.47318 * 300.00231 * 4 2 1 32 32 H 1.09002 * 109.46901 * 60.00653 * 4 2 1 33 33 H 1.08999 * 109.47240 * 179.97438 * 4 2 1 34 34 H 0.97011 * 119.99657 * 0.02562 * 7 5 2 35 35 H 1.09001 * 109.47375 * 299.99966 * 10 8 7 36 36 H 1.09000 * 109.47140 * 59.99984 * 10 8 7 37 37 H 1.08998 * 109.46505 * 299.99708 * 11 10 8 38 38 H 1.08996 * 109.46884 * 180.02562 * 11 10 8 39 39 H 1.09002 * 109.47153 * 180.02562 * 12 11 10 40 40 H 1.09001 * 109.46832 * 60.00321 * 12 11 10 41 41 H 0.97001 * 120.00197 * 264.99912 * 15 13 12 42 42 H 0.96993 * 120.00181 * 180.02562 * 19 18 16 43 43 H 1.08992 * 109.47554 * 59.99639 * 24 13 12 44 44 H 1.09004 * 109.47108 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2306 6 8 1.2441 -1.1716 2.0286 7 7 3.3573 -0.8330 1.4442 8 6 3.8457 -1.5240 2.6401 9 1 3.1734 -2.3465 2.8844 10 6 3.8964 -0.5415 3.8118 11 6 4.4058 -1.2633 5.0610 12 6 5.8086 -1.8135 4.7957 13 6 5.7578 -2.7960 3.6239 14 1 5.0852 -3.6183 3.8681 15 7 7.1009 -3.3233 3.3703 16 6 7.5597 -4.3995 4.0820 17 1 6.9315 -4.8593 4.8307 18 6 8.8325 -4.8987 3.8421 19 7 9.5983 -4.3381 2.9301 20 14 9.4586 -6.3663 4.8135 21 1 9.1026 -7.6198 4.1012 22 1 10.9346 -6.2765 4.9498 23 1 8.8363 -6.3693 6.1619 24 6 5.2485 -2.0742 2.3748 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 -1.7489 -1.2491 32 1 1.6768 -0.2075 -2.1392 33 1 3.1300 -0.7209 -1.2494 34 1 3.9877 -0.4638 0.8059 35 1 4.5686 0.2810 3.5674 36 1 2.8970 -0.1499 4.0011 37 1 3.7332 -2.0854 5.3051 38 1 4.4415 -0.5634 5.8958 39 1 6.1713 -2.3281 5.6855 40 1 6.4812 -0.9912 4.5515 41 1 7.6653 -2.9101 2.6982 42 1 10.4875 -4.6871 2.7622 43 1 5.9210 -1.2520 2.1306 44 1 5.2128 -2.7741 1.5399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981475165.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:23 Heat of formation + Delta-G solvation = -61.373718 kcal Electronic energy + Delta-G solvation = -21267.154255 eV Core-core repulsion = 18218.196395 eV Total energy + Delta-G solvation = -3048.957860 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.32950 -38.17066 -35.70412 -34.66369 -33.24489 -31.11846 -29.36247 -27.80252 -27.60628 -27.24754 -23.88673 -23.33143 -21.86101 -20.74047 -19.91044 -18.95577 -17.17492 -16.68606 -16.23346 -15.22639 -14.97376 -14.41048 -14.14516 -14.04783 -13.95677 -13.62853 -13.37945 -13.15690 -12.71624 -12.59694 -12.46263 -12.19465 -12.03403 -12.00091 -11.94566 -11.19462 -11.17081 -10.98491 -10.90086 -10.87157 -10.70935 -10.32375 -10.25745 -10.15204 -9.96526 -9.66191 -9.44748 -8.93147 -8.84472 -6.95834 -5.76750 -3.05289 2.68284 3.19977 3.43924 3.49397 3.50696 4.44446 4.54104 4.58477 4.64661 4.95314 5.05918 5.13302 5.29174 5.33589 5.36916 5.46122 5.51570 5.57013 5.61455 5.63526 5.69125 5.71005 5.74908 5.86000 5.89652 5.96663 5.99192 6.05099 6.08285 6.15759 6.32483 6.36986 6.53444 6.56776 6.66836 6.74481 6.97851 7.13377 7.57581 7.71187 8.28525 8.42121 9.53253 10.10603 10.45445 11.46038 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030956 B = 0.003826 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.297924 B = 7316.239133 C = 7710.154199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 C -0.140 4.140 4 C -0.141 4.141 5 C 0.521 3.479 6 O -0.542 6.542 7 N -0.722 5.722 8 C 0.148 3.852 9 H 0.086 0.914 10 C -0.123 4.123 11 C -0.115 4.115 12 C -0.136 4.136 13 C 0.183 3.817 14 H 0.048 0.952 15 N -0.724 5.724 16 C -0.237 4.237 17 H 0.071 0.929 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.129 4.129 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.398 0.602 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.063 0.937 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.975 12.121 -6.798 20.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.092 4.092 3 C -0.197 4.197 4 C -0.199 4.199 5 C 0.307 3.693 6 O -0.419 6.419 7 N -0.372 5.372 8 C 0.043 3.957 9 H 0.104 0.896 10 C -0.161 4.161 11 C -0.153 4.153 12 C -0.177 4.177 13 C 0.073 3.927 14 H 0.066 0.934 15 N -0.365 5.365 16 C -0.368 4.368 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.167 4.167 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.232 0.768 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.216 0.784 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.493 11.613 -6.109 20.303 hybrid contribution 1.033 -0.452 0.011 1.127 sum -14.460 11.161 -6.098 19.257 Atomic orbital electron populations 1.21647 0.92111 1.02814 1.01825 1.20835 0.97981 0.96414 0.93939 1.21860 1.01306 0.93832 1.02737 1.21868 1.01405 1.00678 0.95907 1.20534 0.82388 0.79370 0.87040 1.90682 1.55374 1.48563 1.47242 1.46181 1.06874 1.58577 1.25557 1.21017 0.95988 0.94714 0.83940 0.89583 1.21869 1.00798 0.98268 0.95203 1.21487 0.97983 0.99523 0.96346 1.22284 0.94620 0.99721 1.01041 1.20098 0.88407 0.93427 0.90790 0.93401 1.42403 1.12170 1.35950 1.45954 1.19253 0.97676 1.05417 1.14460 0.91153 1.24730 0.96987 0.99788 0.99478 1.69660 1.09897 1.43043 1.35678 0.86204 0.77918 0.82680 0.79498 1.21745 1.21815 1.20746 1.22080 0.93913 1.00387 1.00370 0.92012 0.92221 0.91948 0.92050 0.91467 0.92089 0.91967 0.91475 0.91967 0.76817 0.92139 0.92288 0.92215 0.92559 0.91919 0.92686 0.78355 0.93561 0.91786 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 7.76 37.16 0.29 -0.89 16 2 C -0.09 -0.82 0.87 -155.65 -0.14 -0.96 16 3 C -0.14 -1.04 8.37 37.16 0.31 -0.73 16 4 C -0.14 -1.12 8.37 37.16 0.31 -0.81 16 5 C 0.52 6.71 6.45 -10.98 -0.07 6.64 16 6 O -0.54 -9.10 15.65 5.56 0.09 -9.01 16 7 N -0.72 -8.65 4.86 -53.81 -0.26 -8.91 16 8 C 0.15 2.11 2.45 -67.93 -0.17 1.94 16 9 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 10 C -0.12 -1.69 5.49 -26.73 -0.15 -1.84 16 11 C -0.11 -1.68 5.92 -26.73 -0.16 -1.84 16 12 C -0.14 -2.42 5.50 -26.73 -0.15 -2.57 16 13 C 0.18 3.58 2.77 -67.93 -0.19 3.40 16 14 H 0.05 0.98 8.08 -51.93 -0.42 0.57 16 15 N -0.72 -17.89 5.12 -53.43 -0.27 -18.17 16 16 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 17 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 18 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 19 N -0.93 -28.03 13.06 55.49 0.72 -27.30 16 20 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C -0.13 -2.05 4.86 -26.73 -0.13 -2.18 16 25 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.65 8.10 -51.93 -0.42 0.22 16 28 H 0.06 0.42 7.56 -51.93 -0.39 0.02 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.46 7.57 -51.93 -0.39 0.06 16 34 H 0.40 3.87 7.44 -40.82 -0.30 3.56 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.38 10.00 7.80 -40.82 -0.32 9.68 16 42 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 348.02 15.07 5.24 5.24 Total: -1.00 -31.45 348.02 -8.08 -39.53 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -8.10 Total: 8.26 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -0.48 Total: -7.02 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.19 Total: -54.38 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.45 -8.08 -39.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981475165.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.839 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds