Wall clock time and date at job start Mon Mar 30 2020 00:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46800 * 2 1 4 4 C 1.52996 * 109.47199 * 239.99549 * 2 1 3 5 5 C 1.50706 * 109.46684 * 119.99563 * 2 1 3 6 6 O 1.21277 * 119.99949 * 0.02562 * 5 2 1 7 7 N 1.34774 * 119.99740 * 180.02562 * 5 2 1 8 8 C 1.46496 * 120.00256 * 180.02562 * 7 5 2 9 9 H 1.09001 * 109.47059 * 35.00189 * 8 7 5 10 10 C 1.52997 * 109.46941 * 275.00029 * 8 7 5 11 11 C 1.53006 * 109.47164 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47127 * 59.99836 * 11 10 8 13 13 C 1.53000 * 109.47060 * 300.00449 * 12 11 10 14 14 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 15 15 N 1.46499 * 109.46840 * 180.02562 * 13 12 11 16 16 C 1.36940 * 120.00443 * 85.00012 * 15 13 12 17 17 H 1.08003 * 119.99488 * 359.97438 * 16 15 13 18 18 C 1.38806 * 120.00471 * 180.02562 * 16 15 13 19 19 N 1.31627 * 119.99952 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00459 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47121 * 89.99605 * 20 18 16 22 22 H 1.48496 * 109.47214 * 210.00221 * 20 18 16 23 23 H 1.48505 * 109.46587 * 329.99840 * 20 18 16 24 24 C 1.52996 * 109.47328 * 60.00126 * 13 12 11 25 25 H 1.08997 * 109.47005 * 300.00133 * 1 2 3 26 26 H 1.09002 * 109.47088 * 60.00270 * 1 2 3 27 27 H 1.09003 * 109.47066 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46753 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.46857 * 299.99234 * 3 2 1 30 30 H 1.08996 * 109.46992 * 59.99871 * 3 2 1 31 31 H 1.08990 * 109.47318 * 300.00231 * 4 2 1 32 32 H 1.09002 * 109.46901 * 60.00653 * 4 2 1 33 33 H 1.08999 * 109.47240 * 179.97438 * 4 2 1 34 34 H 0.97011 * 119.99657 * 0.02562 * 7 5 2 35 35 H 1.09001 * 109.47375 * 299.99966 * 10 8 7 36 36 H 1.09000 * 109.47140 * 59.99984 * 10 8 7 37 37 H 1.08998 * 109.46505 * 299.99708 * 11 10 8 38 38 H 1.08996 * 109.46884 * 180.02562 * 11 10 8 39 39 H 1.09002 * 109.47153 * 180.02562 * 12 11 10 40 40 H 1.09001 * 109.46832 * 60.00321 * 12 11 10 41 41 H 0.97001 * 120.00197 * 264.99912 * 15 13 12 42 42 H 0.96993 * 120.00181 * 180.02562 * 19 18 16 43 43 H 1.08992 * 109.47554 * 59.99639 * 24 13 12 44 44 H 1.09004 * 109.47108 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2306 6 8 1.2441 -1.1716 2.0286 7 7 3.3573 -0.8330 1.4442 8 6 3.8457 -1.5240 2.6401 9 1 3.1734 -2.3465 2.8844 10 6 3.8964 -0.5415 3.8118 11 6 4.4058 -1.2633 5.0610 12 6 5.8086 -1.8135 4.7957 13 6 5.7578 -2.7960 3.6239 14 1 5.0852 -3.6183 3.8681 15 7 7.1009 -3.3233 3.3703 16 6 7.5597 -4.3995 4.0820 17 1 6.9315 -4.8593 4.8307 18 6 8.8325 -4.8987 3.8421 19 7 9.5983 -4.3381 2.9301 20 14 9.4586 -6.3663 4.8135 21 1 9.1026 -7.6198 4.1012 22 1 10.9346 -6.2765 4.9498 23 1 8.8363 -6.3693 6.1619 24 6 5.2485 -2.0742 2.3748 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 -1.7489 -1.2491 32 1 1.6768 -0.2075 -2.1392 33 1 3.1300 -0.7209 -1.2494 34 1 3.9877 -0.4638 0.8059 35 1 4.5686 0.2810 3.5674 36 1 2.8970 -0.1499 4.0011 37 1 3.7332 -2.0854 5.3051 38 1 4.4415 -0.5634 5.8958 39 1 6.1713 -2.3281 5.6855 40 1 6.4812 -0.9912 4.5515 41 1 7.6653 -2.9101 2.6982 42 1 10.4875 -4.6871 2.7622 43 1 5.9210 -1.2520 2.1306 44 1 5.2128 -2.7741 1.5399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981475165.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:22 Heat of formation + Delta-G solvation = -81.422770 kcal Electronic energy + Delta-G solvation = -21268.023647 eV Core-core repulsion = 18218.196395 eV Total energy + Delta-G solvation = -3049.827252 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.37820 -39.49124 -36.60592 -36.22170 -34.74372 -32.92934 -30.69259 -29.41469 -28.19343 -27.97388 -25.73272 -24.51202 -23.17700 -22.07549 -21.14393 -20.15799 -19.07706 -17.69564 -17.46874 -16.52457 -16.19089 -15.98201 -15.46329 -15.16796 -15.11339 -14.94233 -14.73525 -14.43771 -14.16405 -13.56319 -13.43322 -13.27186 -13.04003 -12.90840 -12.85116 -12.82120 -12.60537 -12.27164 -12.15860 -12.05498 -11.97756 -11.88152 -11.82617 -11.65032 -11.46298 -11.37122 -10.87826 -10.57832 -10.02309 -9.00183 -7.94175 -5.22069 1.47366 1.48289 1.56672 1.67639 2.18598 2.56734 3.39091 3.60471 3.65285 3.84581 3.86764 3.97153 4.03677 4.21467 4.30237 4.32728 4.45142 4.52392 4.56562 4.66550 4.73138 4.75044 4.75429 4.84960 4.96405 4.97201 5.01766 5.03388 5.11348 5.16465 5.20593 5.25269 5.34198 5.36091 5.37244 5.49192 5.50347 5.54526 5.65442 6.28695 6.60062 7.29233 7.34990 8.10317 8.34512 9.29171 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030956 B = 0.003826 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.297924 B = 7316.239133 C = 7710.154199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.083 4.083 3 C -0.137 4.137 4 C -0.140 4.140 5 C 0.516 3.484 6 O -0.586 6.586 7 N -0.712 5.712 8 C 0.157 3.843 9 H 0.063 0.937 10 C -0.114 4.114 11 C -0.107 4.107 12 C -0.126 4.126 13 C 0.177 3.823 14 H 0.034 0.966 15 N -0.735 5.735 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.073 4.073 19 N -0.968 5.968 20 Si 0.968 3.032 21 H -0.288 1.288 22 H -0.295 1.295 23 H -0.272 1.272 24 C -0.113 4.113 25 H 0.048 0.952 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.412 0.588 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.055 0.945 41 H 0.374 0.626 42 H 0.251 0.749 43 H 0.076 0.924 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.615 13.506 -7.455 21.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.086 4.086 3 C -0.195 4.195 4 C -0.197 4.197 5 C 0.304 3.696 6 O -0.466 6.466 7 N -0.362 5.362 8 C 0.052 3.948 9 H 0.082 0.918 10 C -0.153 4.153 11 C -0.145 4.145 12 C -0.166 4.166 13 C 0.068 3.932 14 H 0.052 0.948 15 N -0.375 5.375 16 C -0.371 4.371 17 H 0.089 0.911 18 C -0.265 4.265 19 N -0.619 5.619 20 Si 0.798 3.202 21 H -0.215 1.215 22 H -0.221 1.221 23 H -0.197 1.197 24 C -0.152 4.152 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.248 0.752 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.206 0.794 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.162 13.022 -6.769 21.831 hybrid contribution 1.156 -0.873 0.214 1.465 sum -15.006 12.148 -6.555 20.389 Atomic orbital electron populations 1.21661 0.92222 1.01933 1.02532 1.20875 0.97870 0.97405 0.92486 1.21875 1.01917 0.92173 1.03487 1.21891 1.01884 0.99980 0.95959 1.21280 0.81988 0.78702 0.87662 1.90664 1.56401 1.50474 1.49028 1.46031 1.07169 1.57990 1.25056 1.20727 0.94243 0.94565 0.85283 0.91837 1.21790 1.01052 0.98196 0.94246 1.21416 0.95638 0.99864 0.97626 1.22087 0.96613 0.98888 0.98997 1.20304 0.85876 0.93754 0.93276 0.94824 1.42565 1.13827 1.35603 1.45512 1.19583 0.97685 1.05761 1.14046 0.91080 1.25483 0.97457 1.02681 1.00928 1.69800 1.10017 1.44630 1.37422 0.85212 0.76941 0.79497 0.78576 1.21538 1.22122 1.19663 1.21861 0.95025 1.00202 0.98129 0.93279 0.89487 0.93660 0.91104 0.89255 0.92851 0.93346 0.89135 0.91231 0.75159 0.90652 0.92266 0.92585 0.90563 0.94052 0.92669 0.79398 0.94044 0.90560 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 7.76 71.98 0.56 -1.61 16 2 C -0.08 -1.39 0.87 -52.92 -0.05 -1.43 16 3 C -0.14 -1.63 8.37 71.98 0.60 -1.02 16 4 C -0.14 -1.87 8.37 71.98 0.60 -1.27 16 5 C 0.52 12.79 6.45 87.66 0.56 13.35 16 6 O -0.59 -19.73 15.65 -3.02 -0.05 -19.78 16 7 N -0.71 -16.00 4.86 -442.54 -2.15 -18.15 16 8 C 0.16 4.35 2.45 44.99 0.11 4.46 16 9 H 0.06 2.08 7.58 -2.39 -0.02 2.07 16 10 C -0.11 -2.95 5.49 30.60 0.17 -2.78 16 11 C -0.11 -2.99 5.92 30.60 0.18 -2.80 16 12 C -0.13 -4.40 5.50 30.59 0.17 -4.23 16 13 C 0.18 6.93 2.77 44.99 0.12 7.05 16 14 H 0.03 1.41 8.08 -2.39 -0.02 1.39 16 15 N -0.74 -36.73 5.12 -322.95 -1.65 -38.38 16 16 C -0.24 -13.30 9.93 84.03 0.83 -12.47 16 17 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 18 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 19 N -0.97 -58.77 13.06 21.65 0.28 -58.48 16 20 Si 0.97 46.33 29.55 68.60 2.03 48.35 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 22 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 24 C -0.11 -3.53 4.86 30.59 0.15 -3.39 16 25 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 26 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.04 0.92 8.10 -2.39 -0.02 0.90 16 28 H 0.07 0.71 7.56 -2.39 -0.02 0.70 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.83 7.57 -2.39 -0.02 0.81 16 34 H 0.41 7.03 7.44 -92.70 -0.69 6.34 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 40 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.37 19.78 7.80 -92.71 -0.72 19.06 16 42 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 43 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -68.42 348.02 2.49 -65.93 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: -0.45 Total: 30.38 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 4.49 Total: -9.87 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -3.52 Total: -115.01 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.05 Total: -19.78 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -68.42 2.49 -65.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981475165.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.496 kcal (2) G-P(sol) polarization free energy of solvation -68.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds