Wall clock time and date at job start Mon Mar 30 2020 00:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36932 * 119.99927 * 2 1 4 4 H 1.08006 * 119.99680 * 185.47847 * 3 2 1 5 5 C 1.38803 * 120.00393 * 5.48164 * 3 2 1 6 6 N 1.31631 * 120.00084 * 23.37099 * 5 3 2 7 7 Si 1.86802 * 120.00212 * 203.37326 * 5 3 2 8 8 H 1.48497 * 109.47087 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47145 * 120.00034 * 7 5 3 10 10 H 1.48505 * 109.46872 * 239.99808 * 7 5 3 11 11 C 1.46501 * 119.99744 * 179.97438 * 2 1 3 12 12 C 1.53035 * 109.46164 * 300.00630 * 11 2 1 13 13 C 1.53200 * 109.31299 * 181.38669 * 12 11 2 14 14 N 1.46927 * 108.77138 * 305.36279 * 13 12 11 15 15 C 1.34777 * 120.62960 * 233.57993 * 14 13 12 16 16 O 1.21275 * 120.00060 * 354.85403 * 15 14 13 17 17 C 1.50705 * 119.99750 * 174.84570 * 15 14 13 18 18 C 1.53003 * 109.47039 * 182.14850 * 17 15 14 19 19 C 1.53002 * 109.47195 * 302.14726 * 17 15 14 20 20 C 1.52997 * 109.46875 * 62.15096 * 17 15 14 21 21 C 1.46927 * 118.73851 * 53.85995 * 14 13 12 22 22 C 1.53048 * 109.45649 * 60.07568 * 11 2 1 23 23 H 1.08991 * 109.47410 * 275.05533 * 1 2 3 24 24 H 1.08998 * 109.46748 * 35.05867 * 1 2 3 25 25 H 1.08998 * 109.47296 * 155.05109 * 1 2 3 26 26 H 0.96996 * 119.99767 * 179.97438 * 6 5 3 27 27 H 1.09006 * 109.44734 * 180.02562 * 11 2 1 28 28 H 1.08997 * 109.49790 * 61.43538 * 12 11 2 29 29 H 1.09002 * 109.52580 * 301.34917 * 12 11 2 30 30 H 1.08991 * 109.58654 * 185.57861 * 13 12 11 31 31 H 1.09001 * 109.70118 * 65.21462 * 13 12 11 32 32 H 1.09001 * 109.47033 * 60.00035 * 18 17 15 33 33 H 1.08995 * 109.47056 * 180.02562 * 18 17 15 34 34 H 1.08999 * 109.46757 * 300.00650 * 18 17 15 35 35 H 1.08996 * 109.46714 * 52.09158 * 19 17 15 36 36 H 1.09001 * 109.46858 * 172.08517 * 19 17 15 37 37 H 1.08989 * 109.47066 * 292.08608 * 19 17 15 38 38 H 1.08996 * 109.47445 * 69.10199 * 20 17 15 39 39 H 1.09003 * 109.47140 * 189.09915 * 20 17 15 40 40 H 1.08998 * 109.47148 * 309.09412 * 20 17 15 41 41 H 1.09005 * 109.58845 * 65.92679 * 21 14 13 42 42 H 1.09002 * 109.58654 * 186.34837 * 21 14 13 43 43 H 1.09002 * 109.49443 * 298.55829 * 22 11 2 44 44 H 1.08990 * 109.49848 * 58.63185 * 22 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2260 1.1880 -0.0893 5 6 1.4605 2.3852 0.1148 6 7 0.2669 2.4080 0.6694 7 14 2.2267 3.9671 -0.5177 8 1 3.5643 3.6740 -1.0922 9 1 1.3549 4.5546 -1.5665 10 1 2.3703 4.9303 0.6034 11 6 2.1975 -1.2688 0.0006 12 6 1.8275 -2.0706 1.2505 13 6 2.6211 -3.3809 1.2652 14 7 2.3848 -4.0910 0.0009 15 6 1.9587 -5.3697 0.0007 16 8 1.8560 -5.9747 1.0467 17 6 1.6096 -6.0474 -1.2993 18 6 1.1069 -7.4646 -1.0167 19 6 0.5150 -5.2506 -2.0120 20 6 2.8525 -6.1151 -2.1889 21 6 2.6278 -3.3828 -1.2633 22 6 1.8289 -2.0707 -1.2498 23 1 -0.3634 0.0905 1.0236 24 1 -0.3633 0.8412 -0.5903 25 1 -0.3634 -0.9317 -0.4335 26 1 -0.2145 3.2462 0.7499 27 1 3.2691 -1.0692 0.0009 28 1 0.7602 -2.2918 1.2380 29 1 2.0683 -1.4894 2.1406 30 1 2.2896 -3.9994 2.0992 31 1 3.6844 -3.1653 1.3700 32 1 0.2214 -7.4163 -0.3829 33 1 0.8549 -7.9549 -1.9570 34 1 1.8867 -8.0321 -0.5089 35 1 0.8170 -4.2061 -2.0879 36 1 0.3614 -5.6579 -3.0113 37 1 -0.4129 -5.3203 -1.4446 38 1 3.5704 -6.8127 -1.7577 39 1 2.5685 -6.4553 -3.1848 40 1 3.3041 -5.1255 -2.2582 41 1 3.6914 -3.1652 -1.3617 42 1 2.3009 -4.0027 -2.0982 43 1 0.7616 -2.2920 -1.2385 44 1 2.0707 -1.4892 -2.1393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985762322.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:45 Heat of formation + Delta-G solvation = -2.115559 kcal Electronic energy + Delta-G solvation = -22180.549856 eV Core-core repulsion = 19134.161622 eV Total energy + Delta-G solvation = -3046.388234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.64024 -37.65270 -35.91700 -35.04657 -32.15041 -30.78966 -29.67581 -27.52983 -27.25706 -26.05415 -25.27249 -23.07698 -22.67374 -21.14857 -19.52136 -18.25036 -16.81468 -16.56376 -15.98799 -15.22925 -15.05401 -14.50162 -14.17595 -13.97781 -13.72323 -13.57939 -13.28453 -12.82263 -12.50331 -12.28817 -12.25549 -12.19809 -11.88546 -11.81004 -11.69141 -11.46253 -11.07755 -10.97522 -10.89340 -10.84308 -10.59855 -10.34344 -10.22451 -10.09598 -9.79276 -9.66411 -9.37736 -8.45489 -8.40297 -6.91823 -5.76021 -3.04736 2.75612 3.16218 3.38309 3.46668 3.48264 4.38443 4.48974 4.65514 4.76564 4.99298 5.10217 5.21029 5.35114 5.37143 5.40098 5.46571 5.49291 5.56304 5.60313 5.67433 5.73745 5.74923 5.84114 5.90239 5.93353 6.04177 6.09094 6.15802 6.19105 6.27397 6.37638 6.50972 6.63504 6.78009 6.95642 6.97766 7.48359 7.59162 7.67445 7.84345 8.31934 8.33727 9.22140 9.88992 10.33610 11.30802 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036496 B = 0.004551 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.019545 B = 6150.832500 C = 6271.915545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.600 5.600 3 C -0.251 4.251 4 H 0.074 0.926 5 C -0.002 4.002 6 N -0.904 5.904 7 Si 0.895 3.105 8 H -0.279 1.279 9 H -0.290 1.290 10 H -0.293 1.293 11 C 0.182 3.818 12 C -0.145 4.145 13 C 0.114 3.886 14 N -0.603 5.603 15 C 0.523 3.477 16 O -0.550 6.550 17 C -0.086 4.086 18 C -0.124 4.124 19 C -0.160 4.160 20 C -0.157 4.157 21 C 0.086 3.914 22 C -0.149 4.149 23 H 0.016 0.984 24 H 0.060 0.940 25 H -0.003 1.003 26 H 0.251 0.749 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.064 0.936 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.233 -15.597 -6.871 17.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.321 5.321 3 C -0.380 4.380 4 H 0.092 0.908 5 C -0.200 4.200 6 N -0.551 5.551 7 Si 0.725 3.275 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.220 1.220 11 C 0.073 3.927 12 C -0.186 4.186 13 C -0.009 4.009 14 N -0.336 5.336 15 C 0.311 3.689 16 O -0.428 6.428 17 C -0.089 4.089 18 C -0.182 4.182 19 C -0.217 4.217 20 C -0.214 4.214 21 C -0.036 4.036 22 C -0.189 4.189 23 H 0.034 0.966 24 H 0.079 0.921 25 H 0.015 0.985 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.121 0.879 43 H 0.082 0.918 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.064 -15.731 -6.278 17.213 hybrid contribution 0.270 1.076 -0.206 1.128 sum 3.334 -14.655 -6.485 16.369 Atomic orbital electron populations 1.20887 0.82415 0.95989 0.99041 1.44107 1.02025 1.00254 1.85760 1.19320 0.91445 0.83421 1.43832 0.90802 1.24723 0.96958 0.97544 1.00747 1.70229 1.14620 1.25324 1.44882 0.86317 0.78470 0.83968 0.78699 1.20449 1.21666 1.22025 1.20213 0.95861 0.85832 0.90799 1.22514 1.00055 0.94603 1.01402 1.21668 0.99696 0.93666 0.85878 1.48101 1.65815 1.11834 1.07815 1.20541 0.76226 0.81326 0.90807 1.90646 1.54086 1.64183 1.33871 1.20749 0.97434 0.97102 0.93612 1.21642 1.01832 0.93542 1.01195 1.22275 0.97832 1.01229 1.00334 1.22255 0.96384 1.03514 0.99289 1.22542 1.00280 0.94570 0.86245 1.22614 1.00130 0.94768 1.01437 0.96585 0.92150 0.98503 0.93882 0.91976 0.92231 0.90784 0.89803 0.91900 0.92079 0.92240 0.92099 0.90128 0.91509 0.92016 0.92113 0.91403 0.90619 0.91482 0.87884 0.91760 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.93 8.11 59.85 0.49 4.41 16 2 N -0.60 -14.45 2.82 -173.44 -0.49 -14.94 16 3 C -0.25 -6.73 9.72 -15.06 -0.15 -6.87 16 4 H 0.07 1.93 7.76 -52.48 -0.41 1.52 16 5 C 0.00 -0.07 5.00 -17.43 -0.09 -0.16 16 6 N -0.90 -26.14 10.42 55.49 0.58 -25.57 16 7 Si 0.90 21.51 29.61 -169.99 -5.03 16.48 16 8 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 C 0.18 3.47 2.55 -67.89 -0.17 3.30 16 12 C -0.15 -2.60 5.34 -26.61 -0.14 -2.74 16 13 C 0.11 1.76 6.42 -3.71 -0.02 1.73 16 14 N -0.60 -8.64 2.96 -172.50 -0.51 -9.15 16 15 C 0.52 7.75 6.48 -10.98 -0.07 7.68 16 16 O -0.55 -10.01 15.42 5.56 0.09 -9.93 16 17 C -0.09 -0.96 0.75 -155.66 -0.12 -1.07 16 18 C -0.12 -1.32 7.75 37.16 0.29 -1.03 16 19 C -0.16 -1.63 8.10 37.16 0.30 -1.33 16 20 C -0.16 -1.40 8.10 37.16 0.30 -1.10 16 21 C 0.09 1.07 4.01 -3.49 -0.01 1.06 16 22 C -0.15 -2.33 4.99 -26.38 -0.13 -2.46 16 23 H 0.02 0.42 7.82 -51.93 -0.41 0.02 16 24 H 0.06 1.61 6.40 -51.93 -0.33 1.28 16 25 H 0.00 -0.08 6.47 -51.93 -0.34 -0.41 16 26 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.06 1.20 7.78 -51.93 -0.40 0.79 16 28 H 0.06 1.14 7.72 -51.93 -0.40 0.74 16 29 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.08 1.37 7.04 -51.93 -0.37 1.00 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 35 H 0.08 0.87 3.87 -51.93 -0.20 0.67 16 36 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 37 H 0.06 0.68 8.13 -51.94 -0.42 0.26 16 38 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 39 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 40 H 0.08 0.66 4.74 -51.93 -0.25 0.42 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.10 1.06 2.77 -51.93 -0.14 0.92 16 43 H 0.06 1.05 6.08 -51.93 -0.32 0.74 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 325.90 15.07 4.91 4.91 Total: -1.00 -30.79 325.90 -7.32 -38.11 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -7.33 Total: -1.33 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 0.47 Total: 1.41 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.42 Total: -49.66 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.79 -7.32 -38.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985762322.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.995 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds