Wall clock time and date at job start Mon Mar 30 2020 00:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36932 * 119.99927 * 2 1 4 4 H 1.08006 * 119.99680 * 185.47847 * 3 2 1 5 5 C 1.38803 * 120.00393 * 5.48164 * 3 2 1 6 6 N 1.31631 * 120.00084 * 23.37099 * 5 3 2 7 7 Si 1.86802 * 120.00212 * 203.37326 * 5 3 2 8 8 H 1.48497 * 109.47087 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47145 * 120.00034 * 7 5 3 10 10 H 1.48505 * 109.46872 * 239.99808 * 7 5 3 11 11 C 1.46501 * 119.99744 * 179.97438 * 2 1 3 12 12 C 1.53035 * 109.46164 * 300.00630 * 11 2 1 13 13 C 1.53200 * 109.31299 * 181.38669 * 12 11 2 14 14 N 1.46927 * 108.77138 * 305.36279 * 13 12 11 15 15 C 1.34777 * 120.62960 * 233.57993 * 14 13 12 16 16 O 1.21275 * 120.00060 * 354.85403 * 15 14 13 17 17 C 1.50705 * 119.99750 * 174.84570 * 15 14 13 18 18 C 1.53003 * 109.47039 * 182.14850 * 17 15 14 19 19 C 1.53002 * 109.47195 * 302.14726 * 17 15 14 20 20 C 1.52997 * 109.46875 * 62.15096 * 17 15 14 21 21 C 1.46927 * 118.73851 * 53.85995 * 14 13 12 22 22 C 1.53048 * 109.45649 * 60.07568 * 11 2 1 23 23 H 1.08991 * 109.47410 * 275.05533 * 1 2 3 24 24 H 1.08998 * 109.46748 * 35.05867 * 1 2 3 25 25 H 1.08998 * 109.47296 * 155.05109 * 1 2 3 26 26 H 0.96996 * 119.99767 * 179.97438 * 6 5 3 27 27 H 1.09006 * 109.44734 * 180.02562 * 11 2 1 28 28 H 1.08997 * 109.49790 * 61.43538 * 12 11 2 29 29 H 1.09002 * 109.52580 * 301.34917 * 12 11 2 30 30 H 1.08991 * 109.58654 * 185.57861 * 13 12 11 31 31 H 1.09001 * 109.70118 * 65.21462 * 13 12 11 32 32 H 1.09001 * 109.47033 * 60.00035 * 18 17 15 33 33 H 1.08995 * 109.47056 * 180.02562 * 18 17 15 34 34 H 1.08999 * 109.46757 * 300.00650 * 18 17 15 35 35 H 1.08996 * 109.46714 * 52.09158 * 19 17 15 36 36 H 1.09001 * 109.46858 * 172.08517 * 19 17 15 37 37 H 1.08989 * 109.47066 * 292.08608 * 19 17 15 38 38 H 1.08996 * 109.47445 * 69.10199 * 20 17 15 39 39 H 1.09003 * 109.47140 * 189.09915 * 20 17 15 40 40 H 1.08998 * 109.47148 * 309.09412 * 20 17 15 41 41 H 1.09005 * 109.58845 * 65.92679 * 21 14 13 42 42 H 1.09002 * 109.58654 * 186.34837 * 21 14 13 43 43 H 1.09002 * 109.49443 * 298.55829 * 22 11 2 44 44 H 1.08990 * 109.49848 * 58.63185 * 22 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2260 1.1880 -0.0893 5 6 1.4605 2.3852 0.1148 6 7 0.2669 2.4080 0.6694 7 14 2.2267 3.9671 -0.5177 8 1 3.5643 3.6740 -1.0922 9 1 1.3549 4.5546 -1.5665 10 1 2.3703 4.9303 0.6034 11 6 2.1975 -1.2688 0.0006 12 6 1.8275 -2.0706 1.2505 13 6 2.6211 -3.3809 1.2652 14 7 2.3848 -4.0910 0.0009 15 6 1.9587 -5.3697 0.0007 16 8 1.8560 -5.9747 1.0467 17 6 1.6096 -6.0474 -1.2993 18 6 1.1069 -7.4646 -1.0167 19 6 0.5150 -5.2506 -2.0120 20 6 2.8525 -6.1151 -2.1889 21 6 2.6278 -3.3828 -1.2633 22 6 1.8289 -2.0707 -1.2498 23 1 -0.3634 0.0905 1.0236 24 1 -0.3633 0.8412 -0.5903 25 1 -0.3634 -0.9317 -0.4335 26 1 -0.2145 3.2462 0.7499 27 1 3.2691 -1.0692 0.0009 28 1 0.7602 -2.2918 1.2380 29 1 2.0683 -1.4894 2.1406 30 1 2.2896 -3.9994 2.0992 31 1 3.6844 -3.1653 1.3700 32 1 0.2214 -7.4163 -0.3829 33 1 0.8549 -7.9549 -1.9570 34 1 1.8867 -8.0321 -0.5089 35 1 0.8170 -4.2061 -2.0879 36 1 0.3614 -5.6579 -3.0113 37 1 -0.4129 -5.3203 -1.4446 38 1 3.5704 -6.8127 -1.7577 39 1 2.5685 -6.4553 -3.1848 40 1 3.3041 -5.1255 -2.2582 41 1 3.6914 -3.1652 -1.3617 42 1 2.3009 -4.0027 -2.0982 43 1 0.7616 -2.2920 -1.2385 44 1 2.0707 -1.4892 -2.1393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985762322.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:45 Heat of formation + Delta-G solvation = -20.393034 kcal Electronic energy + Delta-G solvation = -22181.342427 eV Core-core repulsion = 19134.161622 eV Total energy + Delta-G solvation = -3047.180804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.77115 -39.09528 -37.00521 -36.60397 -33.87692 -32.05130 -31.40274 -28.25005 -28.10967 -28.05657 -26.72069 -24.47149 -24.09057 -22.49144 -20.83904 -19.49658 -18.78924 -17.71530 -17.12639 -16.86409 -16.34502 -15.80263 -15.45370 -15.21419 -15.16181 -14.88984 -14.75267 -14.28006 -13.88578 -13.59247 -13.31067 -13.18597 -13.10206 -12.94406 -12.84911 -12.77680 -12.58904 -12.55426 -12.31643 -12.15735 -12.05187 -11.88893 -11.82763 -11.71698 -11.33717 -11.20783 -10.57522 -10.44320 -9.65231 -8.91209 -7.83846 -5.13851 1.47559 1.50444 1.60014 1.61994 2.03706 2.53578 3.28472 3.41725 3.60204 3.83975 3.88761 3.96206 4.07017 4.15844 4.20845 4.36695 4.37612 4.52560 4.65290 4.70753 4.74075 4.76709 4.80555 4.84606 4.90881 4.94327 4.97073 4.99822 5.06560 5.11037 5.25519 5.28944 5.35194 5.37766 5.44100 5.49464 5.61833 5.66066 5.75750 6.29678 6.45860 7.15757 7.16797 7.91845 8.32470 9.22303 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036496 B = 0.004551 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.019545 B = 6150.832500 C = 6271.915545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.613 5.613 3 C -0.255 4.255 4 H 0.081 0.919 5 C -0.059 4.059 6 N -0.940 5.940 7 Si 0.960 3.040 8 H -0.264 1.264 9 H -0.293 1.293 10 H -0.299 1.299 11 C 0.175 3.825 12 C -0.133 4.133 13 C 0.122 3.878 14 N -0.604 5.604 15 C 0.515 3.485 16 O -0.591 6.591 17 C -0.083 4.083 18 C -0.123 4.123 19 C -0.158 4.158 20 C -0.155 4.155 21 C 0.093 3.907 22 C -0.138 4.138 23 H -0.017 1.017 24 H 0.033 0.967 25 H 0.025 0.975 26 H 0.245 0.755 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.134 0.866 43 H 0.056 0.944 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.711 -16.892 -9.398 19.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.336 5.336 3 C -0.384 4.384 4 H 0.098 0.902 5 C -0.253 4.253 6 N -0.589 5.589 7 Si 0.790 3.210 8 H -0.188 1.188 9 H -0.220 1.220 10 H -0.227 1.227 11 C 0.068 3.932 12 C -0.173 4.173 13 C -0.001 4.001 14 N -0.336 5.336 15 C 0.305 3.695 16 O -0.472 6.472 17 C -0.086 4.086 18 C -0.181 4.181 19 C -0.215 4.215 20 C -0.212 4.212 21 C -0.029 4.029 22 C -0.177 4.177 23 H 0.002 0.998 24 H 0.052 0.948 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.151 0.849 43 H 0.074 0.926 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.577 -17.054 -8.835 19.745 hybrid contribution -0.181 1.414 0.637 1.562 sum 4.396 -15.640 -8.197 18.197 Atomic orbital electron populations 1.20541 0.83036 0.96155 0.96738 1.44354 1.01971 1.01470 1.85765 1.19700 0.91947 0.84510 1.42272 0.90162 1.25470 0.97712 1.00580 1.01520 1.70386 1.16210 1.25596 1.46667 0.85296 0.78160 0.80062 0.77527 1.18838 1.22025 1.22712 1.20496 0.95461 0.84485 0.92792 1.22310 0.99305 0.95605 1.00102 1.21469 1.00028 0.92037 0.86610 1.48191 1.65554 1.11940 1.07908 1.21361 0.75117 0.81189 0.91832 1.90627 1.55651 1.65134 1.35748 1.20829 0.98951 0.96852 0.91936 1.21648 1.00680 0.93487 1.02253 1.22282 0.96721 1.00876 1.01576 1.22268 0.95004 1.03883 0.99996 1.22694 1.00972 0.93029 0.86195 1.22430 1.00165 0.95856 0.99298 0.99823 0.94843 0.95683 0.94522 0.91774 0.93989 0.92822 0.90950 0.90211 0.93891 0.89285 0.93114 0.90627 0.88505 0.93377 0.92312 0.88654 0.90200 0.89479 0.84912 0.92582 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.98 8.11 127.77 1.04 10.02 16 2 N -0.61 -29.63 2.82 -702.63 -1.98 -31.61 16 3 C -0.25 -13.59 9.72 84.03 0.82 -12.78 16 4 H 0.08 4.10 7.76 -2.91 -0.02 4.08 16 5 C -0.06 -3.27 5.00 84.86 0.42 -2.84 16 6 N -0.94 -55.83 10.42 21.65 0.23 -55.60 16 7 Si 0.96 44.52 29.61 68.60 2.03 46.55 16 8 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 9 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 10 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 11 C 0.17 6.50 2.55 45.02 0.11 6.62 16 12 C -0.13 -4.78 5.34 30.67 0.16 -4.62 16 13 C 0.12 3.68 6.42 86.37 0.55 4.24 16 14 N -0.60 -16.20 2.96 -818.05 -2.42 -18.62 16 15 C 0.52 14.53 6.48 87.66 0.57 15.10 16 16 O -0.59 -21.45 15.42 -3.01 -0.05 -21.50 16 17 C -0.08 -1.61 0.75 -52.93 -0.04 -1.65 16 18 C -0.12 -2.36 7.75 71.98 0.56 -1.80 16 19 C -0.16 -2.70 8.10 71.98 0.58 -2.12 16 20 C -0.15 -2.10 8.10 71.98 0.58 -1.52 16 21 C 0.09 1.99 4.01 86.51 0.35 2.34 16 22 C -0.14 -3.98 4.99 30.82 0.15 -3.83 16 23 H -0.02 -0.92 7.82 -2.39 -0.02 -0.94 16 24 H 0.03 1.82 6.40 -2.39 -0.02 1.81 16 25 H 0.02 1.07 6.47 -2.39 -0.02 1.06 16 26 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 27 H 0.06 2.36 7.78 -2.38 -0.02 2.35 16 28 H 0.04 1.64 7.72 -2.39 -0.02 1.62 16 29 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.07 2.38 7.04 -2.39 -0.02 2.37 16 31 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 32 H 0.04 0.96 8.12 -2.39 -0.02 0.94 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.05 1.07 8.08 -2.39 -0.02 1.05 16 35 H 0.08 1.37 3.87 -2.39 -0.01 1.36 16 36 H 0.10 1.11 8.08 -2.39 -0.02 1.09 16 37 H 0.05 0.96 8.13 -2.39 -0.02 0.94 16 38 H 0.06 0.85 8.12 -2.39 -0.02 0.83 16 39 H 0.09 0.83 8.07 -2.39 -0.02 0.81 16 40 H 0.08 1.02 4.74 -2.39 -0.01 1.01 16 41 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.13 2.15 2.77 -2.39 -0.01 2.15 16 43 H 0.06 1.73 6.08 -2.39 -0.01 1.71 16 44 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -68.44 325.90 4.64 -63.80 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 0.97 Total: 9.83 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 5.86 Total: 7.16 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -4.18 Total: -105.83 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.05 Total: -21.50 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -68.44 4.64 -63.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985762322.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.406 kcal (2) G-P(sol) polarization free energy of solvation -68.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds