Wall clock time and date at job start Mon Mar 30 2020 00:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47289 * 2 1 4 4 C 1.53001 * 109.47152 * 240.00341 * 2 1 3 5 5 C 1.50702 * 109.46904 * 120.00268 * 2 1 3 6 6 O 1.21275 * 120.00180 * 0.02562 * 5 2 1 7 7 N 1.34777 * 119.99797 * 179.97438 * 5 2 1 8 8 C 1.46498 * 120.00073 * 180.02562 * 7 5 2 9 9 C 1.52997 * 109.47426 * 154.99826 * 8 7 5 10 10 C 1.53003 * 109.47241 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47087 * 300.00042 * 10 9 8 12 12 N 1.46498 * 109.46963 * 179.97438 * 11 10 9 13 13 C 1.36943 * 119.99752 * 154.72381 * 12 11 10 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 11 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 11 16 16 N 1.31624 * 119.99698 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47213 * 60.00246 * 17 15 13 19 19 H 1.48502 * 109.47317 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47081 * 299.99875 * 17 15 13 21 21 C 1.52997 * 109.47114 * 59.99880 * 11 10 9 22 22 C 1.52999 * 109.46797 * 274.99803 * 8 7 5 23 23 H 1.09005 * 109.47213 * 300.00063 * 1 2 3 24 24 H 1.09003 * 109.47079 * 59.99874 * 1 2 3 25 25 H 1.09002 * 109.47246 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47007 * 180.02562 * 3 2 1 27 27 H 1.08994 * 109.47415 * 300.00124 * 3 2 1 28 28 H 1.09011 * 109.47025 * 60.00283 * 3 2 1 29 29 H 1.09002 * 109.47215 * 300.00228 * 4 2 1 30 30 H 1.09003 * 109.47305 * 59.99922 * 4 2 1 31 31 H 1.09002 * 109.47328 * 180.02562 * 4 2 1 32 32 H 0.97004 * 119.99878 * 359.97438 * 7 5 2 33 33 H 1.08995 * 109.47033 * 34.99726 * 8 7 5 34 34 H 1.09004 * 109.46812 * 59.99970 * 9 8 7 35 35 H 1.08997 * 109.47293 * 299.99867 * 9 8 7 36 36 H 1.08997 * 109.46962 * 180.02562 * 10 9 8 37 37 H 1.08995 * 109.46928 * 60.00077 * 10 9 8 38 38 H 1.09004 * 109.47434 * 300.00074 * 11 10 9 39 39 H 0.97001 * 120.00384 * 335.00737 * 12 11 10 40 40 H 0.96999 * 119.99739 * 180.02562 * 16 15 13 41 41 H 1.09009 * 109.47238 * 59.99946 * 21 11 10 42 42 H 1.08997 * 109.47293 * 179.97438 * 21 11 10 43 43 H 1.08995 * 109.47266 * 299.99780 * 22 8 7 44 44 H 1.09000 * 109.47204 * 59.99838 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0322 -0.7105 1.2305 6 8 1.2442 -1.1718 2.0285 7 7 3.3573 -0.8341 1.4435 8 6 3.8457 -1.5252 2.6393 9 6 5.2480 -2.0761 2.3731 10 6 5.7582 -2.7973 3.6223 11 6 5.8103 -1.8141 4.7934 12 7 6.2983 -2.5049 5.9896 13 6 6.9145 -1.7960 6.9861 14 1 7.0366 -0.7270 6.8922 15 6 7.3820 -2.4513 8.1170 16 7 7.2335 -3.7542 8.2312 17 14 8.2218 -1.4842 9.4766 18 1 7.2822 -0.4675 10.0140 19 1 8.6260 -2.4097 10.5654 20 1 9.4255 -0.8067 8.9313 21 6 4.4080 -1.2633 5.0596 22 6 3.8977 -0.5425 3.8108 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.6766 -1.7488 -1.2494 30 1 1.6766 -0.2073 -2.1393 31 1 3.1300 -0.7216 -1.2491 32 1 3.9877 -0.4660 0.8046 33 1 3.1729 -2.3471 2.8841 34 1 5.9208 -1.2541 2.1283 35 1 5.2110 -2.7762 1.5386 36 1 6.7575 -3.1894 3.4328 37 1 5.0856 -3.6192 3.8675 38 1 6.4830 -0.9922 4.5482 39 1 6.1886 -3.4650 6.0739 40 1 7.5599 -4.2120 9.0216 41 1 3.7352 -2.0852 5.3048 42 1 4.4450 -0.5632 5.8941 43 1 4.5704 0.2794 3.5660 44 1 2.8986 -0.1500 4.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026597663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:22 Heat of formation + Delta-G solvation = -60.795283 kcal Electronic energy + Delta-G solvation = -21149.885595 eV Core-core repulsion = 18100.952818 eV Total energy + Delta-G solvation = -3048.932777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.37043 -38.17604 -35.75661 -34.83870 -32.92636 -30.58571 -30.37676 -27.68690 -27.67037 -27.07822 -23.96717 -22.83677 -22.23227 -20.81635 -19.84592 -19.02864 -17.12677 -16.76962 -16.26307 -15.28096 -15.14258 -14.51802 -14.15055 -14.10607 -13.76404 -13.66707 -13.47212 -12.95547 -12.65382 -12.61050 -12.49761 -12.11927 -12.00940 -11.98607 -11.78180 -11.39545 -11.25204 -11.21410 -10.99235 -10.78220 -10.73370 -10.64127 -10.18920 -10.07411 -9.73571 -9.70095 -9.49918 -8.91896 -8.81424 -6.91677 -5.73184 -3.01622 2.64574 3.14866 3.45880 3.50232 3.51255 4.39206 4.48324 4.59440 4.61790 4.87993 5.01839 5.08286 5.22334 5.29400 5.32245 5.39358 5.51823 5.54432 5.59314 5.61917 5.65621 5.70646 5.74652 5.78626 5.90411 5.91087 5.91233 6.04318 6.06983 6.26830 6.31209 6.34379 6.51833 6.60161 6.70058 6.75775 7.01906 7.18046 7.51918 7.72577 8.24809 8.45862 9.56535 10.15474 10.50022 11.49607 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042628 B = 0.003443 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.682648 B = 8129.600756 C = 8285.187119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 C -0.140 4.140 4 C -0.140 4.140 5 C 0.520 3.480 6 O -0.538 6.538 7 N -0.724 5.724 8 C 0.144 3.856 9 C -0.118 4.118 10 C -0.121 4.121 11 C 0.178 3.822 12 N -0.726 5.726 13 C -0.237 4.237 14 H 0.069 0.931 15 C -0.015 4.015 16 N -0.934 5.934 17 Si 0.906 3.094 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C -0.132 4.132 22 C -0.122 4.122 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.396 0.604 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.046 0.954 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.134 8.004 -20.983 24.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.092 4.092 3 C -0.198 4.198 4 C -0.197 4.197 5 C 0.305 3.695 6 O -0.414 6.414 7 N -0.374 5.374 8 C 0.041 3.959 9 C -0.157 4.157 10 C -0.159 4.159 11 C 0.068 3.932 12 N -0.366 5.366 13 C -0.369 4.369 14 H 0.087 0.913 15 C -0.210 4.210 16 N -0.583 5.583 17 Si 0.737 3.263 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.213 1.213 21 C -0.173 4.173 22 C -0.162 4.162 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.230 0.770 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.602 7.767 -20.263 23.730 hybrid contribution 0.735 0.400 0.599 1.029 sum -8.868 8.167 -19.664 23.065 Atomic orbital electron populations 1.21652 0.92065 1.02828 1.01926 1.20833 0.98046 0.96431 0.93853 1.21861 1.01223 0.93831 1.02841 1.21860 1.01191 1.00650 0.96020 1.20534 0.82407 0.79445 0.87072 1.90705 1.55331 1.48304 1.47088 1.46179 1.06875 1.58849 1.25533 1.21098 0.95549 0.95146 0.84147 1.21743 0.94912 1.00187 0.98834 1.21754 1.01167 0.98870 0.94148 1.20233 0.92516 0.93642 0.86851 1.42425 1.69398 1.07530 1.17235 1.19205 1.29342 0.91762 0.96562 0.91294 1.24737 1.02005 0.95693 0.98610 1.69654 1.52155 1.06961 1.29485 0.86284 0.79403 0.78726 0.81878 1.21305 1.21729 1.21326 1.22214 0.99364 0.99958 0.95768 1.21874 1.00855 0.98063 0.95388 0.91913 0.92206 0.91955 0.92108 0.91479 0.91970 0.92042 0.91468 0.92126 0.77021 0.89577 0.91648 0.91955 0.91401 0.91991 0.93642 0.78307 0.93506 0.92535 0.91856 0.92403 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 7.76 37.16 0.29 -0.85 16 2 C -0.09 -0.77 0.87 -155.66 -0.14 -0.91 16 3 C -0.14 -0.98 8.37 37.16 0.31 -0.67 16 4 C -0.14 -0.94 8.37 37.16 0.31 -0.63 16 5 C 0.52 6.45 6.45 -10.98 -0.07 6.37 16 6 O -0.54 -9.06 15.64 5.56 0.09 -8.97 16 7 N -0.72 -7.94 4.86 -53.81 -0.26 -8.21 16 8 C 0.14 1.95 2.46 -67.93 -0.17 1.78 16 9 C -0.12 -1.48 5.39 -26.73 -0.14 -1.62 16 10 C -0.12 -1.95 5.39 -26.73 -0.14 -2.10 16 11 C 0.18 3.51 2.77 -67.93 -0.19 3.32 16 12 N -0.73 -18.33 5.12 -53.43 -0.27 -18.60 16 13 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 14 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 15 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 16 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 17 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 C -0.13 -2.45 5.50 -26.76 -0.15 -2.60 16 22 C -0.12 -1.86 5.49 -26.75 -0.15 -2.01 16 23 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 26 H 0.06 0.37 7.57 -51.93 -0.39 -0.02 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.35 7.56 -51.93 -0.39 -0.05 16 32 H 0.40 3.22 7.44 -40.82 -0.30 2.92 16 33 H 0.09 1.37 7.58 -51.93 -0.39 0.97 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 39 H 0.38 10.31 7.80 -40.82 -0.32 9.99 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 42 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 348.01 15.07 5.24 5.24 Total: -1.00 -32.35 348.01 -8.08 -40.44 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -8.10 Total: 7.54 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -0.48 Total: -7.22 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.19 Total: -54.61 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.35 -8.08 -40.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026597663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.360 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds