Wall clock time and date at job start Mon Mar 30 2020 00:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47289 * 2 1 4 4 C 1.53001 * 109.47152 * 240.00341 * 2 1 3 5 5 C 1.50702 * 109.46904 * 120.00268 * 2 1 3 6 6 O 1.21275 * 120.00180 * 0.02562 * 5 2 1 7 7 N 1.34777 * 119.99797 * 179.97438 * 5 2 1 8 8 C 1.46498 * 120.00073 * 180.02562 * 7 5 2 9 9 C 1.52997 * 109.47426 * 154.99826 * 8 7 5 10 10 C 1.53003 * 109.47241 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47087 * 300.00042 * 10 9 8 12 12 N 1.46498 * 109.46963 * 179.97438 * 11 10 9 13 13 C 1.36943 * 119.99752 * 154.72381 * 12 11 10 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 11 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 11 16 16 N 1.31624 * 119.99698 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47213 * 60.00246 * 17 15 13 19 19 H 1.48502 * 109.47317 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47081 * 299.99875 * 17 15 13 21 21 C 1.52997 * 109.47114 * 59.99880 * 11 10 9 22 22 C 1.52999 * 109.46797 * 274.99803 * 8 7 5 23 23 H 1.09005 * 109.47213 * 300.00063 * 1 2 3 24 24 H 1.09003 * 109.47079 * 59.99874 * 1 2 3 25 25 H 1.09002 * 109.47246 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47007 * 180.02562 * 3 2 1 27 27 H 1.08994 * 109.47415 * 300.00124 * 3 2 1 28 28 H 1.09011 * 109.47025 * 60.00283 * 3 2 1 29 29 H 1.09002 * 109.47215 * 300.00228 * 4 2 1 30 30 H 1.09003 * 109.47305 * 59.99922 * 4 2 1 31 31 H 1.09002 * 109.47328 * 180.02562 * 4 2 1 32 32 H 0.97004 * 119.99878 * 359.97438 * 7 5 2 33 33 H 1.08995 * 109.47033 * 34.99726 * 8 7 5 34 34 H 1.09004 * 109.46812 * 59.99970 * 9 8 7 35 35 H 1.08997 * 109.47293 * 299.99867 * 9 8 7 36 36 H 1.08997 * 109.46962 * 180.02562 * 10 9 8 37 37 H 1.08995 * 109.46928 * 60.00077 * 10 9 8 38 38 H 1.09004 * 109.47434 * 300.00074 * 11 10 9 39 39 H 0.97001 * 120.00384 * 335.00737 * 12 11 10 40 40 H 0.96999 * 119.99739 * 180.02562 * 16 15 13 41 41 H 1.09009 * 109.47238 * 59.99946 * 21 11 10 42 42 H 1.08997 * 109.47293 * 179.97438 * 21 11 10 43 43 H 1.08995 * 109.47266 * 299.99780 * 22 8 7 44 44 H 1.09000 * 109.47204 * 59.99838 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0322 -0.7105 1.2305 6 8 1.2442 -1.1718 2.0285 7 7 3.3573 -0.8341 1.4435 8 6 3.8457 -1.5252 2.6393 9 6 5.2480 -2.0761 2.3731 10 6 5.7582 -2.7973 3.6223 11 6 5.8103 -1.8141 4.7934 12 7 6.2983 -2.5049 5.9896 13 6 6.9145 -1.7960 6.9861 14 1 7.0366 -0.7270 6.8922 15 6 7.3820 -2.4513 8.1170 16 7 7.2335 -3.7542 8.2312 17 14 8.2218 -1.4842 9.4766 18 1 7.2822 -0.4675 10.0140 19 1 8.6260 -2.4097 10.5654 20 1 9.4255 -0.8067 8.9313 21 6 4.4080 -1.2633 5.0596 22 6 3.8977 -0.5425 3.8108 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.6766 -1.7488 -1.2494 30 1 1.6766 -0.2073 -2.1393 31 1 3.1300 -0.7216 -1.2491 32 1 3.9877 -0.4660 0.8046 33 1 3.1729 -2.3471 2.8841 34 1 5.9208 -1.2541 2.1283 35 1 5.2110 -2.7762 1.5386 36 1 6.7575 -3.1894 3.4328 37 1 5.0856 -3.6192 3.8675 38 1 6.4830 -0.9922 4.5482 39 1 6.1886 -3.4650 6.0739 40 1 7.5599 -4.2120 9.0216 41 1 3.7352 -2.0852 5.3048 42 1 4.4450 -0.5632 5.8941 43 1 4.5704 0.2794 3.5660 44 1 2.8986 -0.1500 4.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026597663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:21 Heat of formation + Delta-G solvation = -82.170841 kcal Electronic energy + Delta-G solvation = -21150.812509 eV Core-core repulsion = 18100.952818 eV Total energy + Delta-G solvation = -3049.859691 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.36981 -39.48371 -36.63490 -36.33352 -34.56509 -32.37205 -31.70474 -29.07356 -28.17609 -27.93750 -25.72432 -24.09410 -23.52693 -22.12037 -21.13477 -20.14309 -19.05592 -17.71827 -17.35215 -16.86421 -16.20195 -15.92815 -15.40609 -15.29789 -15.02945 -14.87708 -14.76265 -14.24233 -14.02787 -13.46801 -13.27120 -13.18176 -13.09853 -13.02680 -12.86704 -12.79499 -12.59805 -12.41414 -12.31271 -12.17560 -12.04656 -11.87398 -11.82870 -11.65399 -11.45550 -11.20793 -10.85362 -10.59453 -10.00035 -8.99939 -7.93501 -5.21896 1.46440 1.49680 1.55595 1.68696 2.20435 2.56815 3.39103 3.62046 3.75739 3.82084 3.88342 3.91199 3.97992 4.28828 4.30481 4.36585 4.39663 4.53221 4.58853 4.65117 4.73379 4.76267 4.85556 4.85774 4.97092 4.97750 5.00055 5.03831 5.11122 5.13153 5.24138 5.25760 5.27058 5.37078 5.37840 5.48214 5.54157 5.57273 5.63183 6.29175 6.62901 7.33008 7.34420 8.12113 8.34553 9.30116 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042628 B = 0.003443 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.682648 B = 8129.600756 C = 8285.187119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.083 4.083 3 C -0.138 4.138 4 C -0.137 4.137 5 C 0.513 3.487 6 O -0.590 6.590 7 N -0.708 5.708 8 C 0.151 3.849 9 C -0.104 4.104 10 C -0.114 4.114 11 C 0.173 3.827 12 N -0.740 5.740 13 C -0.239 4.239 14 H 0.075 0.925 15 C -0.079 4.079 16 N -0.972 5.972 17 Si 0.972 3.028 18 H -0.281 1.281 19 H -0.296 1.296 20 H -0.275 1.275 21 C -0.123 4.123 22 C -0.110 4.110 23 H 0.042 0.958 24 H 0.087 0.913 25 H 0.045 0.955 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.415 0.585 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.371 0.629 40 H 0.250 0.750 41 H 0.036 0.964 42 H 0.040 0.960 43 H 0.077 0.923 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.329 9.902 -23.719 27.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.086 4.086 3 C -0.195 4.195 4 C -0.194 4.194 5 C 0.301 3.699 6 O -0.470 6.470 7 N -0.359 5.359 8 C 0.046 3.954 9 C -0.142 4.142 10 C -0.153 4.153 11 C 0.065 3.935 12 N -0.379 5.379 13 C -0.371 4.371 14 H 0.093 0.907 15 C -0.271 4.271 16 N -0.623 5.623 17 Si 0.801 3.199 18 H -0.207 1.207 19 H -0.223 1.223 20 H -0.201 1.201 21 C -0.164 4.164 22 C -0.150 4.150 23 H 0.062 0.938 24 H 0.106 0.894 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.253 0.747 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.202 0.798 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.095 0.905 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.785 9.720 -23.069 26.530 hybrid contribution 0.416 -0.171 1.415 1.484 sum -8.369 9.549 -21.655 25.103 Atomic orbital electron populations 1.21674 0.92654 1.01894 1.02327 1.20871 0.97599 0.97383 0.92743 1.21885 1.02145 0.92252 1.03254 1.21881 1.02181 0.99905 0.95471 1.21343 0.82233 0.78672 0.87653 1.90689 1.56652 1.50532 1.49143 1.45960 1.06999 1.58147 1.24841 1.20812 0.95891 0.94058 0.84604 1.21642 0.94015 1.01120 0.97466 1.21644 1.01247 0.97995 0.94365 1.20484 0.92434 0.94312 0.86287 1.42674 1.69538 1.07107 1.18574 1.19608 1.28168 0.92215 0.97075 0.90678 1.25563 1.03630 0.96665 1.01193 1.69819 1.53908 1.08564 1.29987 0.85233 0.78627 0.77282 0.78777 1.20682 1.22280 1.20090 1.22025 0.98526 0.98973 0.96867 1.21734 1.00249 0.98546 0.94428 0.93834 0.89416 0.93607 0.90645 0.89210 0.93474 0.93204 0.89267 0.90560 0.74749 0.92269 0.89275 0.89337 0.91354 0.93087 0.93298 0.79754 0.94110 0.94538 0.94156 0.90457 0.93758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 7.76 71.98 0.56 -1.61 16 2 C -0.08 -1.26 0.87 -52.93 -0.05 -1.30 16 3 C -0.14 -1.49 8.37 71.98 0.60 -0.89 16 4 C -0.14 -1.37 8.37 71.98 0.60 -0.77 16 5 C 0.51 12.16 6.45 87.66 0.56 12.72 16 6 O -0.59 -20.29 15.64 -3.01 -0.05 -20.34 16 7 N -0.71 -13.85 4.86 -442.55 -2.15 -16.00 16 8 C 0.15 3.87 2.46 44.99 0.11 3.99 16 9 C -0.10 -2.30 5.39 30.59 0.16 -2.14 16 10 C -0.11 -3.57 5.39 30.59 0.16 -3.40 16 11 C 0.17 6.80 2.77 44.99 0.12 6.92 16 12 N -0.74 -38.07 5.12 -322.94 -1.65 -39.72 16 13 C -0.24 -13.47 9.93 84.03 0.83 -12.63 16 14 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 15 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 16 N -0.97 -60.70 13.06 21.65 0.28 -60.42 16 17 Si 0.97 46.84 29.55 68.60 2.03 48.86 16 18 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 20 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 21 C -0.12 -4.66 5.50 30.58 0.17 -4.49 16 22 C -0.11 -3.27 5.49 30.58 0.17 -3.10 16 23 H 0.04 0.89 8.10 -2.38 -0.02 0.87 16 24 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.04 0.91 8.10 -2.39 -0.02 0.89 16 26 H 0.07 0.60 7.57 -2.39 -0.02 0.58 16 27 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 0.53 7.56 -2.39 -0.02 0.51 16 32 H 0.41 5.05 7.44 -92.71 -0.69 4.36 16 33 H 0.06 1.88 7.58 -2.39 -0.02 1.87 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 39 H 0.37 20.60 7.80 -92.71 -0.72 19.88 16 40 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -72.81 348.01 2.49 -70.32 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: -0.45 Total: 28.11 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 4.48 Total: -10.82 kcal Atomic # 7 Polarization: -112.62 SS G_CDS: -3.52 Total: -116.14 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.05 Total: -20.34 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -72.81 2.49 -70.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026597663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.850 kcal (2) G-P(sol) polarization free energy of solvation -72.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds