Wall clock time and date at job start Mon Mar 30 2020 00:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47222 * 2 1 4 4 C 1.52997 * 109.47107 * 119.99935 * 2 1 3 5 5 C 1.50705 * 109.47066 * 240.00002 * 2 1 3 6 6 O 1.21279 * 119.99672 * 0.02562 * 5 2 1 7 7 N 1.34776 * 120.00010 * 179.97438 * 5 2 1 8 8 C 1.46499 * 120.00051 * 180.02562 * 7 5 2 9 9 H 1.08994 * 109.36324 * 34.74515 * 8 7 5 10 10 C 1.50884 * 109.36430 * 154.36002 * 8 7 5 11 11 C 1.52566 * 109.35622 * 212.07997 * 10 8 7 12 12 C 1.47098 * 114.32480 * 274.98960 * 11 10 8 13 13 C 1.54865 * 110.32384 * 62.80100 * 12 11 10 14 14 N 1.44580 * 109.60273 * 288.73656 * 13 12 11 15 15 C 1.36933 * 118.64271 * 270.74804 * 14 13 12 16 16 H 1.07999 * 120.00260 * 139.20934 * 15 14 13 17 17 C 1.38814 * 119.99875 * 319.20726 * 15 14 13 18 18 N 1.31618 * 120.00018 * 156.28994 * 17 15 14 19 19 Si 1.86803 * 119.99896 * 336.29005 * 17 15 14 20 20 H 1.48499 * 109.47198 * 95.53652 * 19 17 15 21 21 H 1.48501 * 109.46910 * 215.53402 * 19 17 15 22 22 H 1.48493 * 109.47093 * 335.53210 * 19 17 15 23 23 C 1.47605 * 122.71297 * 90.72365 * 14 13 12 24 24 H 1.09003 * 109.47281 * 59.99814 * 1 2 3 25 25 H 1.09003 * 109.47318 * 299.99884 * 1 2 3 26 26 H 1.09000 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46879 * 59.99847 * 3 2 1 28 28 H 1.09000 * 109.47366 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46635 * 300.00388 * 3 2 1 30 30 H 1.09002 * 109.47467 * 60.00417 * 4 2 1 31 31 H 1.09006 * 109.47191 * 179.97438 * 4 2 1 32 32 H 1.08996 * 109.47074 * 299.99600 * 4 2 1 33 33 H 0.97005 * 119.99582 * 359.97438 * 7 5 2 34 34 H 1.08993 * 109.49304 * 332.04773 * 10 8 7 35 35 H 1.09006 * 109.48746 * 92.11386 * 10 8 7 36 36 H 1.08994 * 108.51321 * 153.73580 * 11 10 8 37 37 H 1.08998 * 108.39148 * 36.15228 * 11 10 8 38 38 H 1.09003 * 109.32671 * 302.53974 * 12 11 10 39 39 H 1.09005 * 109.32873 * 183.06337 * 12 11 10 40 40 H 1.09001 * 109.44959 * 168.69471 * 13 12 11 41 41 H 1.08998 * 109.42257 * 48.76137 * 13 12 11 42 42 H 0.97000 * 119.99972 * 179.97438 * 18 17 15 43 43 H 1.09002 * 108.94767 * 197.18528 * 23 14 13 44 44 H 1.08996 * 108.94712 * 78.55701 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.0323 -0.7104 -1.2305 6 8 1.2441 -1.1709 -2.0290 7 7 3.3574 -0.8331 -1.4441 8 6 3.8457 -1.5232 -2.6405 9 1 3.1693 -1.3268 -3.4723 10 6 5.2222 -1.0112 -2.9866 11 6 5.4112 -1.0523 -4.4999 12 6 5.8638 -2.3522 -5.0190 13 6 4.8023 -3.4436 -4.7355 14 7 4.7797 -3.7426 -3.3212 15 6 5.6120 -4.7194 -2.8434 16 1 6.1282 -4.5779 -1.9054 17 6 5.7922 -5.8916 -3.5648 18 7 6.8839 -6.6071 -3.3958 19 14 4.4852 -6.4537 -4.7753 20 1 4.8426 -5.9904 -6.1401 21 1 4.4026 -7.9363 -4.7616 22 1 3.1714 -5.8812 -4.3864 23 6 3.8970 -3.0380 -2.3709 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2493 31 1 3.1300 -0.7216 1.2490 32 1 1.6767 -0.2074 2.1392 33 1 3.9877 -0.4638 -0.8059 34 1 5.3277 0.0149 -2.6346 35 1 5.9744 -1.6391 -2.5089 36 1 6.1438 -0.2947 -4.7779 37 1 4.4610 -0.8030 -4.9721 38 1 6.8016 -2.6268 -4.5359 39 1 6.0239 -2.2753 -6.0944 40 1 5.0519 -4.3462 -5.2934 41 1 3.8213 -3.0845 -5.0463 42 1 7.0097 -7.4264 -3.8996 43 1 4.2626 -3.2050 -1.3577 44 1 2.8899 -3.4466 -2.4537 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034498391.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:47 Heat of formation + Delta-G solvation = -32.866965 kcal Electronic energy + Delta-G solvation = -22077.235956 eV Core-core repulsion = 19029.514241 eV Total energy + Delta-G solvation = -3047.721715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.16911 -38.07005 -35.60214 -34.67439 -33.36779 -31.32157 -30.18737 -27.52206 -27.23556 -26.19747 -24.75389 -23.53330 -22.09274 -20.38000 -19.45253 -19.00557 -16.71324 -16.58838 -16.17968 -15.31270 -15.15721 -14.65335 -14.31430 -14.01455 -13.76586 -13.39747 -13.13803 -13.03142 -12.82977 -12.50282 -12.37691 -12.18819 -11.98087 -11.85498 -11.68207 -11.52391 -11.15729 -11.08520 -11.05282 -10.76900 -10.44595 -10.31024 -10.10436 -10.02935 -9.66281 -9.47750 -9.46027 -8.82656 -8.41068 -6.70704 -5.99389 -3.41202 2.83411 3.34141 3.35617 3.50466 3.60236 4.54514 4.56764 4.63680 4.74858 5.00323 5.16108 5.25561 5.30163 5.36855 5.39233 5.44373 5.54523 5.55685 5.66026 5.72757 5.75451 5.80691 5.84961 5.92743 6.02527 6.07338 6.18667 6.24915 6.29712 6.43674 6.46162 6.61438 6.66859 6.72083 6.80178 6.92487 6.95375 7.15688 7.73643 8.12354 8.39024 8.45979 9.07845 9.74769 10.13808 11.15945 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024591 B = 0.005464 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.375549 B = 5123.205632 C = 5509.192991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 C -0.139 4.139 4 C -0.141 4.141 5 C 0.519 3.481 6 O -0.540 6.540 7 N -0.720 5.720 8 C 0.129 3.871 9 H 0.079 0.921 10 C -0.115 4.115 11 C -0.098 4.098 12 C -0.144 4.144 13 C 0.146 3.854 14 N -0.599 5.599 15 C -0.273 4.273 16 H 0.075 0.925 17 C 0.041 3.959 18 N -0.898 5.898 19 Si 0.874 3.126 20 H -0.285 1.285 21 H -0.301 1.301 22 H -0.269 1.269 23 C 0.143 3.857 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.396 0.604 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.034 0.966 42 H 0.263 0.737 43 H 0.057 0.943 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.072 16.297 6.184 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 C -0.196 4.196 4 C -0.198 4.198 5 C 0.305 3.695 6 O -0.416 6.416 7 N -0.371 5.371 8 C 0.024 3.976 9 H 0.098 0.902 10 C -0.153 4.153 11 C -0.136 4.136 12 C -0.184 4.184 13 C 0.019 3.981 14 N -0.322 5.322 15 C -0.401 4.401 16 H 0.092 0.908 17 C -0.160 4.160 18 N -0.538 5.538 19 Si 0.703 3.297 20 H -0.213 1.213 21 H -0.229 1.229 22 H -0.194 1.194 23 C 0.017 3.983 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.230 0.770 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -7.569 15.807 5.564 18.388 hybrid contribution -0.290 -0.317 -0.438 0.614 sum -7.859 15.490 5.126 18.110 Atomic orbital electron populations 1.21645 0.92177 1.02887 1.01702 1.20825 0.97951 0.96304 0.94037 1.21853 1.01203 0.93956 1.02626 1.21864 1.01355 1.00810 0.95779 1.20519 0.82486 0.79419 0.87098 1.90696 1.55326 1.48656 1.46931 1.46195 1.06820 1.58201 1.25839 1.21451 0.95340 0.93943 0.86876 0.90250 1.21279 0.96894 0.99782 0.97388 1.20238 1.00436 0.98164 0.94810 1.21376 1.02070 0.95950 0.98982 1.21104 0.95186 0.96023 0.85776 1.43756 1.45036 1.40990 1.02401 1.18748 1.18676 0.94002 1.08719 0.90793 1.25489 0.96392 0.95961 0.98123 1.69889 1.24262 1.16709 1.42978 0.86976 0.84816 0.76934 0.80947 1.21297 1.22885 1.19354 1.21546 0.93788 0.88812 0.94195 0.92071 0.92284 0.91876 0.91552 0.92136 0.92163 0.91840 0.92014 0.91575 0.76964 0.92770 0.89878 0.93358 0.93351 0.91021 0.93311 0.92955 0.94794 0.92743 0.92431 0.95958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 7.76 37.16 0.29 -1.05 16 2 C -0.09 -0.93 0.87 -155.66 -0.14 -1.07 16 3 C -0.14 -1.14 8.37 37.16 0.31 -0.83 16 4 C -0.14 -1.29 8.37 37.16 0.31 -0.98 16 5 C 0.52 7.63 6.45 -10.98 -0.07 7.56 16 6 O -0.54 -10.31 15.64 5.56 0.09 -10.22 16 7 N -0.72 -9.92 4.75 -54.36 -0.26 -10.17 16 8 C 0.13 2.18 2.28 -68.50 -0.16 2.02 16 9 H 0.08 1.49 6.72 -51.93 -0.35 1.14 16 10 C -0.12 -1.79 5.07 -28.02 -0.14 -1.93 16 11 C -0.10 -1.56 5.16 -29.79 -0.15 -1.72 16 12 C -0.14 -2.71 5.74 -28.58 -0.16 -2.87 16 13 C 0.15 3.23 4.52 -4.08 -0.02 3.21 16 14 N -0.60 -14.23 1.79 -172.09 -0.31 -14.54 16 15 C -0.27 -7.54 9.66 -15.06 -0.15 -7.69 16 16 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 17 C 0.04 1.19 5.22 -17.43 -0.09 1.10 16 18 N -0.90 -27.23 13.97 55.49 0.78 -26.46 16 19 Si 0.87 22.69 25.29 -169.99 -4.30 18.39 16 20 H -0.29 -7.18 6.70 56.52 0.38 -6.80 16 21 H -0.30 -7.90 7.11 56.52 0.40 -7.49 16 22 H -0.27 -7.07 7.11 56.52 0.40 -6.67 16 23 C 0.14 2.99 5.83 -2.94 -0.02 2.97 16 24 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.44 7.56 -51.93 -0.39 0.05 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.52 7.57 -51.93 -0.39 0.13 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.40 4.32 7.39 -40.82 -0.30 4.02 16 34 H 0.05 0.69 7.95 -51.93 -0.41 0.28 16 35 H 0.08 1.47 7.48 -51.93 -0.39 1.08 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.75 7.34 -51.93 -0.38 0.37 16 38 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 1.28 3.59 -51.93 -0.19 1.09 16 41 H 0.03 0.71 8.06 -51.93 -0.42 0.30 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.06 1.20 7.87 -51.93 -0.41 0.79 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 335.02 15.07 5.05 5.05 Total: -1.00 -32.01 335.02 -7.00 -39.00 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -7.86 Total: 0.21 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -0.18 Total: -1.26 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.21 Total: -51.17 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.30 Total: 18.39 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.01 -7.00 -39.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034498391.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.137 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds