Wall clock time and date at job start Mon Mar 30 2020 00:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47222 * 2 1 4 4 C 1.52997 * 109.47107 * 119.99935 * 2 1 3 5 5 C 1.50705 * 109.47066 * 240.00002 * 2 1 3 6 6 O 1.21279 * 119.99672 * 0.02562 * 5 2 1 7 7 N 1.34776 * 120.00010 * 179.97438 * 5 2 1 8 8 C 1.46499 * 120.00051 * 180.02562 * 7 5 2 9 9 H 1.08994 * 109.36324 * 34.74515 * 8 7 5 10 10 C 1.50884 * 109.36430 * 154.36002 * 8 7 5 11 11 C 1.52566 * 109.35622 * 212.07997 * 10 8 7 12 12 C 1.47098 * 114.32480 * 274.98960 * 11 10 8 13 13 C 1.54865 * 110.32384 * 62.80100 * 12 11 10 14 14 N 1.44580 * 109.60273 * 288.73656 * 13 12 11 15 15 C 1.36933 * 118.64271 * 270.74804 * 14 13 12 16 16 H 1.07999 * 120.00260 * 139.20934 * 15 14 13 17 17 C 1.38814 * 119.99875 * 319.20726 * 15 14 13 18 18 N 1.31618 * 120.00018 * 156.28994 * 17 15 14 19 19 Si 1.86803 * 119.99896 * 336.29005 * 17 15 14 20 20 H 1.48499 * 109.47198 * 95.53652 * 19 17 15 21 21 H 1.48501 * 109.46910 * 215.53402 * 19 17 15 22 22 H 1.48493 * 109.47093 * 335.53210 * 19 17 15 23 23 C 1.47605 * 122.71297 * 90.72365 * 14 13 12 24 24 H 1.09003 * 109.47281 * 59.99814 * 1 2 3 25 25 H 1.09003 * 109.47318 * 299.99884 * 1 2 3 26 26 H 1.09000 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46879 * 59.99847 * 3 2 1 28 28 H 1.09000 * 109.47366 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46635 * 300.00388 * 3 2 1 30 30 H 1.09002 * 109.47467 * 60.00417 * 4 2 1 31 31 H 1.09006 * 109.47191 * 179.97438 * 4 2 1 32 32 H 1.08996 * 109.47074 * 299.99600 * 4 2 1 33 33 H 0.97005 * 119.99582 * 359.97438 * 7 5 2 34 34 H 1.08993 * 109.49304 * 332.04773 * 10 8 7 35 35 H 1.09006 * 109.48746 * 92.11386 * 10 8 7 36 36 H 1.08994 * 108.51321 * 153.73580 * 11 10 8 37 37 H 1.08998 * 108.39148 * 36.15228 * 11 10 8 38 38 H 1.09003 * 109.32671 * 302.53974 * 12 11 10 39 39 H 1.09005 * 109.32873 * 183.06337 * 12 11 10 40 40 H 1.09001 * 109.44959 * 168.69471 * 13 12 11 41 41 H 1.08998 * 109.42257 * 48.76137 * 13 12 11 42 42 H 0.97000 * 119.99972 * 179.97438 * 18 17 15 43 43 H 1.09002 * 108.94767 * 197.18528 * 23 14 13 44 44 H 1.08996 * 108.94712 * 78.55701 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.0323 -0.7104 -1.2305 6 8 1.2441 -1.1709 -2.0290 7 7 3.3574 -0.8331 -1.4441 8 6 3.8457 -1.5232 -2.6405 9 1 3.1693 -1.3268 -3.4723 10 6 5.2222 -1.0112 -2.9866 11 6 5.4112 -1.0523 -4.4999 12 6 5.8638 -2.3522 -5.0190 13 6 4.8023 -3.4436 -4.7355 14 7 4.7797 -3.7426 -3.3212 15 6 5.6120 -4.7194 -2.8434 16 1 6.1282 -4.5779 -1.9054 17 6 5.7922 -5.8916 -3.5648 18 7 6.8839 -6.6071 -3.3958 19 14 4.4852 -6.4537 -4.7753 20 1 4.8426 -5.9904 -6.1401 21 1 4.4026 -7.9363 -4.7616 22 1 3.1714 -5.8812 -4.3864 23 6 3.8970 -3.0380 -2.3709 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2493 31 1 3.1300 -0.7216 1.2490 32 1 1.6767 -0.2074 2.1392 33 1 3.9877 -0.4638 -0.8059 34 1 5.3277 0.0149 -2.6346 35 1 5.9744 -1.6391 -2.5089 36 1 6.1438 -0.2947 -4.7779 37 1 4.4610 -0.8030 -4.9721 38 1 6.8016 -2.6268 -4.5359 39 1 6.0239 -2.2753 -6.0944 40 1 5.0519 -4.3462 -5.2934 41 1 3.8213 -3.0845 -5.0463 42 1 7.0097 -7.4264 -3.8996 43 1 4.2626 -3.2050 -1.3577 44 1 2.8899 -3.4466 -2.4537 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034498391.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:46 Heat of formation + Delta-G solvation = -53.727838 kcal Electronic energy + Delta-G solvation = -22078.140551 eV Core-core repulsion = 19029.514241 eV Total energy + Delta-G solvation = -3048.626310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.37143 -39.58106 -36.60650 -36.23289 -34.97662 -33.38171 -31.62462 -28.19367 -28.14688 -27.92801 -26.30453 -25.11588 -23.51192 -21.78624 -21.11859 -20.11536 -18.63181 -17.82559 -17.63805 -16.90195 -16.63779 -16.00947 -15.72054 -15.18890 -15.02467 -14.79986 -14.75469 -14.52189 -14.31210 -13.86131 -13.52245 -13.27759 -13.23913 -13.03108 -12.94644 -12.78524 -12.60562 -12.60135 -12.18297 -12.00299 -11.88418 -11.84659 -11.75195 -11.63219 -11.44411 -11.23126 -10.73267 -10.57780 -10.08438 -8.70149 -8.24319 -5.62207 1.25423 1.36276 1.48428 1.67285 2.18534 2.38467 3.02915 3.34204 3.67629 3.81370 3.87021 3.95150 3.99925 4.18861 4.26333 4.28908 4.34340 4.49592 4.68052 4.72727 4.75900 4.81440 4.85056 4.85434 4.94680 4.97151 4.98405 5.02606 5.06240 5.21392 5.25036 5.27368 5.35646 5.36582 5.37448 5.39335 5.58856 5.61021 5.95417 6.15282 6.61600 7.01567 7.31177 7.62795 8.01823 8.95043 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024591 B = 0.005464 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.375549 B = 5123.205632 C = 5509.192991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.082 4.082 3 C -0.135 4.135 4 C -0.139 4.139 5 C 0.513 3.487 6 O -0.589 6.589 7 N -0.708 5.708 8 C 0.145 3.855 9 H 0.066 0.934 10 C -0.107 4.107 11 C -0.100 4.100 12 C -0.133 4.133 13 C 0.136 3.864 14 N -0.605 5.605 15 C -0.259 4.259 16 H 0.045 0.955 17 C -0.006 4.006 18 N -0.939 5.939 19 Si 0.930 3.070 20 H -0.271 1.271 21 H -0.304 1.304 22 H -0.277 1.277 23 C 0.146 3.854 24 H 0.048 0.952 25 H 0.089 0.911 26 H 0.040 0.960 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.414 0.586 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.029 0.971 41 H 0.045 0.955 42 H 0.264 0.736 43 H 0.051 0.949 44 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.413 19.254 6.576 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.085 4.085 3 C -0.192 4.192 4 C -0.197 4.197 5 C 0.301 3.699 6 O -0.469 6.469 7 N -0.360 5.360 8 C 0.038 3.962 9 H 0.084 0.916 10 C -0.145 4.145 11 C -0.138 4.138 12 C -0.173 4.173 13 C 0.011 3.989 14 N -0.329 5.329 15 C -0.389 4.389 16 H 0.063 0.937 17 C -0.204 4.204 18 N -0.582 5.582 19 Si 0.759 3.241 20 H -0.197 1.197 21 H -0.232 1.232 22 H -0.202 1.202 23 C 0.020 3.980 24 H 0.067 0.933 25 H 0.108 0.892 26 H 0.059 0.941 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.251 0.749 34 H 0.111 0.889 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges -7.902 18.809 5.969 21.257 hybrid contribution -0.210 -1.221 -0.494 1.333 sum -8.112 17.589 5.475 20.128 Atomic orbital electron populations 1.21668 0.92374 1.01757 1.02611 1.20874 0.97785 0.97636 0.92207 1.21867 1.02050 0.91774 1.03548 1.21894 1.01963 0.99807 0.96023 1.21413 0.82102 0.78631 0.87773 1.90675 1.56520 1.50759 1.48949 1.46053 1.07190 1.57427 1.25304 1.21052 0.96302 0.91119 0.87695 0.91587 1.21217 0.94644 1.01368 0.97297 1.20236 1.01696 0.97022 0.94819 1.21251 0.99435 0.96219 1.00346 1.21219 0.96981 0.96403 0.84333 1.43819 1.44885 1.40712 1.03506 1.18662 1.18067 0.94740 1.07418 0.93732 1.25976 0.97718 0.96304 1.00370 1.69977 1.25811 1.17490 1.44958 0.86059 0.81956 0.76055 0.79991 1.19735 1.23177 1.20200 1.21557 0.91453 0.91645 0.93325 0.93274 0.89198 0.94074 0.89083 0.90817 0.92841 0.93837 0.91082 0.88821 0.74892 0.88933 0.92188 0.90310 0.92442 0.93538 0.91177 0.95247 0.93670 0.92712 0.93002 0.98688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 7.76 71.98 0.56 -1.95 16 2 C -0.08 -1.56 0.87 -52.93 -0.05 -1.60 16 3 C -0.14 -1.72 8.37 71.98 0.60 -1.12 16 4 C -0.14 -2.20 8.37 71.98 0.60 -1.60 16 5 C 0.51 14.59 6.45 87.66 0.57 15.16 16 6 O -0.59 -22.75 15.64 -3.03 -0.05 -22.80 16 7 N -0.71 -18.31 4.75 -444.30 -2.11 -20.43 16 8 C 0.14 4.72 2.28 44.62 0.10 4.83 16 9 H 0.07 2.40 6.72 -2.39 -0.02 2.38 16 10 C -0.11 -3.06 5.07 29.76 0.15 -2.91 16 11 C -0.10 -2.87 5.16 28.62 0.15 -2.72 16 12 C -0.13 -4.79 5.74 29.40 0.17 -4.62 16 13 C 0.14 5.98 4.52 87.37 0.39 6.38 16 14 N -0.61 -29.16 1.79 -698.37 -1.25 -30.41 16 15 C -0.26 -14.72 9.66 84.03 0.81 -13.91 16 16 H 0.05 2.76 8.06 -2.91 -0.02 2.74 16 17 C -0.01 -0.36 5.22 84.86 0.44 0.08 16 18 N -0.94 -58.41 13.97 21.65 0.30 -58.11 16 19 Si 0.93 47.93 25.29 68.60 1.73 49.67 16 20 H -0.27 -13.18 6.70 99.48 0.67 -12.52 16 21 H -0.30 -15.65 7.11 99.48 0.71 -14.94 16 22 H -0.28 -14.46 7.11 99.48 0.71 -13.75 16 23 C 0.15 6.20 5.83 86.49 0.50 6.71 16 24 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 25 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.04 0.98 8.10 -2.39 -0.02 0.96 16 27 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.76 7.56 -2.39 -0.02 0.74 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.99 7.57 -2.38 -0.02 0.97 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.41 7.84 7.39 -92.70 -0.68 7.16 16 34 H 0.09 1.97 7.95 -2.39 -0.02 1.95 16 35 H 0.06 2.04 7.48 -2.38 -0.02 2.02 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.06 1.59 7.34 -2.39 -0.02 1.57 16 38 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.03 1.43 3.59 -2.39 -0.01 1.42 16 41 H 0.04 1.87 8.06 -2.39 -0.02 1.85 16 42 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 43 H 0.05 2.21 7.87 -2.39 -0.02 2.19 16 44 H 0.00 -0.24 8.14 -2.39 -0.02 -0.25 16 Total: -1.00 -72.46 335.02 3.87 -68.59 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.23 Total: 10.76 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 5.00 Total: 2.72 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -3.06 Total: -108.94 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.05 Total: -22.80 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 1.73 Total: 49.67 kcal Total: -72.46 3.87 -68.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034498391.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.867 kcal (2) G-P(sol) polarization free energy of solvation -72.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds