Wall clock time and date at job start Mon Mar 30 2020 00:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47171 * 2 1 4 4 C 1.53007 * 109.46972 * 120.00325 * 2 1 3 5 5 C 1.50697 * 109.47014 * 239.99775 * 2 1 3 6 6 O 1.21280 * 120.00012 * 0.02562 * 5 2 1 7 7 N 1.34778 * 119.99790 * 180.02562 * 5 2 1 8 8 C 1.46500 * 119.99814 * 180.02562 * 7 5 2 9 9 H 1.09000 * 108.44796 * 327.30579 * 8 7 5 10 10 C 1.52569 * 108.51009 * 209.76539 * 8 7 5 11 11 C 1.50883 * 109.35933 * 153.73601 * 10 8 7 12 12 C 1.53948 * 110.09881 * 91.88287 * 11 10 8 13 13 N 1.47601 * 112.13862 * 319.43790 * 12 11 10 14 14 C 1.36937 * 118.63918 * 137.84700 * 13 12 11 15 15 H 1.08007 * 120.00128 * 207.15716 * 14 13 12 16 16 C 1.38813 * 120.00554 * 27.15721 * 14 13 12 17 17 N 1.31623 * 119.99606 * 16.72347 * 16 14 13 18 18 Si 1.86800 * 120.00212 * 196.73081 * 16 14 13 19 19 H 1.48501 * 109.47062 * 93.99713 * 18 16 14 20 20 H 1.48497 * 109.46940 * 213.99688 * 18 16 14 21 21 H 1.48505 * 109.46883 * 333.99266 * 18 16 14 22 22 C 1.44576 * 122.71685 * 317.86294 * 13 12 11 23 23 C 1.47090 * 108.51400 * 84.99988 * 8 7 5 24 24 H 1.08997 * 109.47082 * 60.00033 * 1 2 3 25 25 H 1.09000 * 109.47502 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47490 * 299.99711 * 1 2 3 27 27 H 1.09005 * 109.46610 * 60.00248 * 3 2 1 28 28 H 1.09001 * 109.46983 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47091 * 299.99961 * 3 2 1 30 30 H 1.09000 * 109.47108 * 59.99635 * 4 2 1 31 31 H 1.08998 * 109.46635 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.46677 * 299.99895 * 4 2 1 33 33 H 0.97000 * 120.00432 * 0.02562 * 7 5 2 34 34 H 1.09001 * 109.49267 * 273.69471 * 10 8 7 35 35 H 1.09000 * 109.49057 * 33.76873 * 10 8 7 36 36 H 1.09005 * 109.36217 * 331.69188 * 11 10 8 37 37 H 1.09002 * 109.36662 * 212.08261 * 11 10 8 38 38 H 1.08995 * 108.94916 * 198.75010 * 12 11 10 39 39 H 1.09003 * 108.87434 * 80.07470 * 12 11 10 40 40 H 0.96995 * 119.99597 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.44744 * 330.69128 * 22 13 12 42 42 H 1.09001 * 109.43327 * 210.75621 * 22 13 12 43 43 H 1.08996 * 109.33137 * 304.31182 * 23 8 7 44 44 H 1.08999 * 109.33178 * 63.79383 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2493 5 6 2.0323 -0.7104 -1.2304 6 8 1.2442 -1.1710 -2.0289 7 7 3.3574 -0.8340 -1.4434 8 6 3.8457 -1.5242 -2.6398 9 1 3.1400 -2.3151 -2.8940 10 6 5.1909 -2.1660 -2.3137 11 6 5.4087 -3.3565 -3.2148 12 6 6.1701 -2.9282 -4.4824 13 7 5.7012 -1.6280 -5.0003 14 6 6.6302 -0.7227 -5.4391 15 1 6.4116 0.3345 -5.4063 16 6 7.8531 -1.1636 -5.9260 17 7 8.0065 -2.4231 -6.2762 18 14 9.2810 0.0304 -6.0840 19 1 10.1205 -0.0373 -4.8609 20 1 10.1008 -0.3323 -7.2678 21 1 8.7566 1.4100 -6.2489 22 6 4.3017 -1.2706 -5.0631 23 6 3.8875 -0.5607 -3.7505 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6767 1.9562 0.8901 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 -1.7490 1.2492 31 1 3.1300 -0.7209 1.2494 32 1 1.6766 -0.2075 2.1393 33 1 3.9878 -0.4660 -0.8046 34 1 5.9882 -1.4398 -2.4717 35 1 5.1958 -2.4915 -1.2734 36 1 4.4436 -3.7770 -3.4975 37 1 5.9878 -4.1113 -2.6828 38 1 6.0306 -3.6870 -5.2523 39 1 7.2319 -2.8536 -4.2476 40 1 8.8609 -2.7311 -6.6168 41 1 3.7025 -2.1718 -5.1931 42 1 4.1362 -0.5999 -5.9063 43 1 2.9015 -0.1139 -3.8778 44 1 4.6092 0.2233 -3.5211 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052886761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:31 Heat of formation + Delta-G solvation = -35.854055 kcal Electronic energy + Delta-G solvation = -21916.556565 eV Core-core repulsion = 18868.705321 eV Total energy + Delta-G solvation = -3047.851245 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.22807 -37.89177 -35.60253 -34.75781 -32.36513 -31.57108 -29.92289 -27.53694 -27.26579 -26.07278 -24.26636 -23.52001 -22.20427 -20.11500 -19.42583 -18.87625 -16.78998 -16.61015 -15.94720 -15.12211 -15.00950 -14.41048 -14.06273 -14.00120 -13.69776 -13.48802 -13.28146 -12.76730 -12.52980 -12.50397 -12.31317 -12.01092 -11.93504 -11.87474 -11.37561 -11.23366 -11.10737 -11.07900 -10.83375 -10.66914 -10.40961 -10.22856 -10.06235 -9.86971 -9.74190 -9.58795 -9.35141 -8.73095 -8.37933 -6.62833 -5.76076 -3.19702 2.84918 3.37068 3.40279 3.45127 3.46283 4.51688 4.55701 4.63870 4.73751 5.09064 5.25530 5.35314 5.36236 5.42977 5.48793 5.52901 5.64034 5.65339 5.70800 5.74133 5.78947 5.90699 6.04190 6.05409 6.09763 6.16435 6.26365 6.37292 6.50138 6.53152 6.69304 6.78432 6.86372 6.89138 6.96784 7.08584 7.44271 7.71185 7.77183 7.85038 8.46265 8.49947 9.26770 9.93850 10.39804 11.31323 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030417 B = 0.004620 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.310187 B = 6059.476439 C = 6304.996088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 C -0.140 4.140 4 C -0.139 4.139 5 C 0.518 3.482 6 O -0.544 6.544 7 N -0.726 5.726 8 C 0.160 3.840 9 H 0.073 0.927 10 C -0.111 4.111 11 C -0.140 4.140 12 C 0.178 3.822 13 N -0.590 5.590 14 C -0.258 4.258 15 H 0.064 0.936 16 C 0.005 3.995 17 N -0.903 5.903 18 Si 0.899 3.101 19 H -0.289 1.289 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.162 3.838 23 C -0.152 4.152 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.394 0.606 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.025 0.975 39 H 0.072 0.928 40 H 0.253 0.747 41 H 0.033 0.967 42 H 0.048 0.952 43 H 0.051 0.949 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.610 3.681 14.822 18.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.092 4.092 3 C -0.197 4.197 4 C -0.197 4.197 5 C 0.304 3.696 6 O -0.421 6.421 7 N -0.376 5.376 8 C 0.057 3.943 9 H 0.091 0.909 10 C -0.149 4.149 11 C -0.180 4.180 12 C 0.053 3.947 13 N -0.311 5.311 14 C -0.388 4.388 15 H 0.082 0.918 16 C -0.193 4.193 17 N -0.547 5.547 18 Si 0.729 3.271 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.205 1.205 22 C 0.033 3.967 23 C -0.194 4.194 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.228 0.772 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.043 0.957 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.031 3.223 14.142 17.635 hybrid contribution 1.181 0.783 0.240 1.437 sum -8.851 4.006 14.382 17.356 Atomic orbital electron populations 1.21638 0.92216 1.02704 1.01790 1.20834 0.97916 0.96449 0.94038 1.21854 1.01321 0.93862 1.02683 1.21855 1.01247 1.00563 0.96014 1.20480 0.82597 0.79522 0.87004 1.90678 1.55396 1.48782 1.47236 1.46499 1.06679 1.58562 1.25853 1.20013 0.95603 0.94752 0.83929 0.90895 1.21238 0.96744 0.99018 0.97896 1.21978 1.00689 0.96469 0.98852 1.20992 0.97348 0.86394 0.89944 1.43665 1.00187 1.15911 1.71354 1.19213 0.95367 0.88629 1.35561 0.91788 1.25030 0.99584 0.96185 0.98542 1.70083 1.23927 1.14907 1.45764 0.86332 0.82880 0.80721 0.77180 1.21576 1.21838 1.20451 1.20573 0.86235 0.96594 0.93264 1.21844 1.00299 0.99154 0.98083 0.91968 0.92038 0.92334 0.91612 0.92072 0.92003 0.92115 0.92129 0.91591 0.77246 0.90173 0.93269 0.93413 0.92598 0.95672 0.90996 0.93741 0.94837 0.93361 0.93036 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 7.76 37.16 0.29 -1.02 16 2 C -0.09 -0.94 0.87 -155.66 -0.14 -1.08 16 3 C -0.14 -1.25 8.37 37.16 0.31 -0.94 16 4 C -0.14 -1.19 8.37 37.16 0.31 -0.88 16 5 C 0.52 7.56 6.32 -10.99 -0.07 7.49 16 6 O -0.54 -10.15 15.48 5.56 0.09 -10.06 16 7 N -0.73 -10.17 4.67 -56.82 -0.27 -10.43 16 8 C 0.16 2.71 1.96 -70.99 -0.14 2.57 16 9 H 0.07 1.38 6.65 -51.93 -0.35 1.04 16 10 C -0.11 -1.87 5.00 -28.01 -0.14 -2.01 16 11 C -0.14 -2.61 5.71 -27.30 -0.16 -2.76 16 12 C 0.18 4.18 4.67 -2.94 -0.01 4.16 16 13 N -0.59 -14.41 2.27 -172.09 -0.39 -14.80 16 14 C -0.26 -6.92 9.42 -15.06 -0.14 -7.07 16 15 H 0.06 1.71 7.88 -52.48 -0.41 1.30 16 16 C 0.01 0.14 4.83 -17.43 -0.08 0.06 16 17 N -0.90 -25.90 11.13 55.49 0.62 -25.28 16 18 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.16 3.49 5.66 -4.08 -0.02 3.47 16 23 C -0.15 -2.85 5.20 -28.58 -0.15 -3.00 16 24 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 25 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.52 7.57 -51.93 -0.39 0.12 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.47 7.56 -51.93 -0.39 0.08 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.39 4.55 7.45 -40.82 -0.30 4.24 16 34 H 0.08 1.52 7.48 -51.93 -0.39 1.14 16 35 H 0.05 0.72 8.05 -51.93 -0.42 0.30 16 36 H 0.05 0.87 7.31 -51.93 -0.38 0.49 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 39 H 0.07 1.86 6.42 -51.93 -0.33 1.53 16 40 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.03 0.71 8.06 -51.93 -0.42 0.29 16 42 H 0.05 1.06 7.99 -51.93 -0.41 0.65 16 43 H 0.05 0.97 7.95 -51.93 -0.41 0.56 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 338.50 15.07 5.10 5.10 Total: -1.00 -30.38 338.50 -7.99 -38.37 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.97 Total: 1.65 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -0.14 Total: -1.00 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.04 Total: -50.51 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.38 -7.99 -38.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052886761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.512 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds