Wall clock time and date at job start Mon Mar 30 2020 00:34:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52997 * 109.47171 * 2 1
4 4 C 1.53007 * 109.46972 * 120.00325 * 2 1 3
5 5 C 1.50697 * 109.47014 * 239.99775 * 2 1 3
6 6 O 1.21280 * 120.00012 * 0.02562 * 5 2 1
7 7 N 1.34778 * 119.99790 * 180.02562 * 5 2 1
8 8 C 1.46500 * 119.99814 * 180.02562 * 7 5 2
9 9 H 1.09000 * 108.44796 * 327.30579 * 8 7 5
10 10 C 1.52569 * 108.51009 * 209.76539 * 8 7 5
11 11 C 1.50883 * 109.35933 * 153.73601 * 10 8 7
12 12 C 1.53948 * 110.09881 * 91.88287 * 11 10 8
13 13 N 1.47601 * 112.13862 * 319.43790 * 12 11 10
14 14 C 1.36937 * 118.63918 * 137.84700 * 13 12 11
15 15 H 1.08007 * 120.00128 * 207.15716 * 14 13 12
16 16 C 1.38813 * 120.00554 * 27.15721 * 14 13 12
17 17 N 1.31623 * 119.99606 * 16.72347 * 16 14 13
18 18 Si 1.86800 * 120.00212 * 196.73081 * 16 14 13
19 19 H 1.48501 * 109.47062 * 93.99713 * 18 16 14
20 20 H 1.48497 * 109.46940 * 213.99688 * 18 16 14
21 21 H 1.48505 * 109.46883 * 333.99266 * 18 16 14
22 22 C 1.44576 * 122.71685 * 317.86294 * 13 12 11
23 23 C 1.47090 * 108.51400 * 84.99988 * 8 7 5
24 24 H 1.08997 * 109.47082 * 60.00033 * 1 2 3
25 25 H 1.09000 * 109.47502 * 179.97438 * 1 2 3
26 26 H 1.09000 * 109.47490 * 299.99711 * 1 2 3
27 27 H 1.09005 * 109.46610 * 60.00248 * 3 2 1
28 28 H 1.09001 * 109.46983 * 179.97438 * 3 2 1
29 29 H 1.08997 * 109.47091 * 299.99961 * 3 2 1
30 30 H 1.09000 * 109.47108 * 59.99635 * 4 2 1
31 31 H 1.08998 * 109.46635 * 180.02562 * 4 2 1
32 32 H 1.09004 * 109.46677 * 299.99895 * 4 2 1
33 33 H 0.97000 * 120.00432 * 0.02562 * 7 5 2
34 34 H 1.09001 * 109.49267 * 273.69471 * 10 8 7
35 35 H 1.09000 * 109.49057 * 33.76873 * 10 8 7
36 36 H 1.09005 * 109.36217 * 331.69188 * 11 10 8
37 37 H 1.09002 * 109.36662 * 212.08261 * 11 10 8
38 38 H 1.08995 * 108.94916 * 198.75010 * 12 11 10
39 39 H 1.09003 * 108.87434 * 80.07470 * 12 11 10
40 40 H 0.96995 * 119.99597 * 179.97438 * 17 16 14
41 41 H 1.09001 * 109.44744 * 330.69128 * 22 13 12
42 42 H 1.09001 * 109.43327 * 210.75621 * 22 13 12
43 43 H 1.08996 * 109.33137 * 304.31182 * 23 8 7
44 44 H 1.08999 * 109.33178 * 63.79383 * 23 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7214 1.2493
5 6 2.0323 -0.7104 -1.2304
6 8 1.2442 -1.1710 -2.0289
7 7 3.3574 -0.8340 -1.4434
8 6 3.8457 -1.5242 -2.6398
9 1 3.1400 -2.3151 -2.8940
10 6 5.1909 -2.1660 -2.3137
11 6 5.4087 -3.3565 -3.2148
12 6 6.1701 -2.9282 -4.4824
13 7 5.7012 -1.6280 -5.0003
14 6 6.6302 -0.7227 -5.4391
15 1 6.4116 0.3345 -5.4063
16 6 7.8531 -1.1636 -5.9260
17 7 8.0065 -2.4231 -6.2762
18 14 9.2810 0.0304 -6.0840
19 1 10.1205 -0.0373 -4.8609
20 1 10.1008 -0.3323 -7.2678
21 1 8.7566 1.4100 -6.2489
22 6 4.3017 -1.2706 -5.0631
23 6 3.8875 -0.5607 -3.7505
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3634 -1.0276 -0.0005
26 1 -0.3634 0.5138 0.8900
27 1 1.6767 1.9562 0.8901
28 1 3.1300 1.4424 0.0005
29 1 1.6767 1.9563 -0.8900
30 1 1.6766 -1.7490 1.2492
31 1 3.1300 -0.7209 1.2494
32 1 1.6766 -0.2075 2.1393
33 1 3.9878 -0.4660 -0.8046
34 1 5.9882 -1.4398 -2.4717
35 1 5.1958 -2.4915 -1.2734
36 1 4.4436 -3.7770 -3.4975
37 1 5.9878 -4.1113 -2.6828
38 1 6.0306 -3.6870 -5.2523
39 1 7.2319 -2.8536 -4.2476
40 1 8.8609 -2.7311 -6.6168
41 1 3.7025 -2.1718 -5.1931
42 1 4.1362 -0.5999 -5.9063
43 1 2.9015 -0.1139 -3.8778
44 1 4.6092 0.2233 -3.5211
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001052886761.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:34:30
Heat of formation + Delta-G solvation = -53.995457 kcal
Electronic energy + Delta-G solvation = -21917.343236 eV
Core-core repulsion = 18868.705321 eV
Total energy + Delta-G solvation = -3048.637915 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-41.42463 -39.41648 -36.66282 -36.31375 -34.02534 -33.32585 -31.60660 -28.20172
-28.15715 -27.77931 -25.85575 -25.25111 -23.47833 -21.54871 -21.14652 -20.09710
-18.58440 -17.71011 -17.34098 -16.96893 -16.12011 -15.84170 -15.60942 -15.29022
-15.18645 -14.78863 -14.58784 -14.22491 -14.02656 -13.61043 -13.27325 -13.22408
-13.03563 -13.02027 -12.84216 -12.71800 -12.60750 -12.40742 -12.10547 -12.03764
-11.88114 -11.84319 -11.74548 -11.51453 -11.50836 -11.35483 -10.59279 -10.43080
-10.03234 -8.64772 -7.84155 -5.31036 1.47645 1.48921 1.57978 1.71615
2.25822 2.53137 3.29273 3.63440 3.66885 3.77720 3.88453 3.96323
4.11859 4.30042 4.33389 4.43818 4.44295 4.67224 4.73368 4.74829
4.77047 4.84770 4.94252 4.96738 4.98089 4.98437 5.03623 5.11771
5.14354 5.22333 5.24837 5.33600 5.36092 5.37736 5.48920 5.57466
5.61506 5.69216 5.80357 6.42284 6.65068 7.20036 7.33784 7.94986
8.35637 9.21199
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.030417 B = 0.004620 C = 0.004440
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 920.310187 B = 6059.476439 C = 6304.996088
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.083 4.083
3 C -0.138 4.138
4 C -0.137 4.137
5 C 0.513 3.487
6 O -0.590 6.590
7 N -0.715 5.715
8 C 0.167 3.833
9 H 0.056 0.944
10 C -0.100 4.100
11 C -0.130 4.130
12 C 0.188 3.812
13 N -0.600 5.600
14 C -0.264 4.264
15 H 0.063 0.937
16 C -0.045 4.045
17 N -0.935 5.935
18 Si 0.963 3.037
19 H -0.284 1.284
20 H -0.298 1.298
21 H -0.270 1.270
22 C 0.159 3.841
23 C -0.132 4.132
24 H 0.043 0.957
25 H 0.047 0.953
26 H 0.088 0.912
27 H 0.091 0.909
28 H 0.068 0.932
29 H 0.046 0.954
30 H 0.051 0.949
31 H 0.070 0.930
32 H 0.090 0.910
33 H 0.410 0.590
34 H 0.062 0.938
35 H 0.083 0.917
36 H 0.051 0.949
37 H 0.078 0.922
38 H -0.009 1.009
39 H 0.044 0.956
40 H 0.249 0.751
41 H 0.033 0.967
42 H 0.037 0.963
43 H 0.049 0.951
44 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.696 4.940 17.612 20.702
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.086 4.086
3 C -0.195 4.195
4 C -0.194 4.194
5 C 0.301 3.699
6 O -0.470 6.470
7 N -0.366 5.366
8 C 0.063 3.937
9 H 0.074 0.926
10 C -0.138 4.138
11 C -0.169 4.169
12 C 0.063 3.937
13 N -0.322 5.322
14 C -0.395 4.395
15 H 0.081 0.919
16 C -0.241 4.241
17 N -0.580 5.580
18 Si 0.792 3.208
19 H -0.210 1.210
20 H -0.225 1.225
21 H -0.195 1.195
22 C 0.031 3.969
23 C -0.174 4.174
24 H 0.063 0.937
25 H 0.066 0.934
26 H 0.107 0.893
27 H 0.110 0.890
28 H 0.087 0.913
29 H 0.066 0.934
30 H 0.070 0.930
31 H 0.089 0.911
32 H 0.109 0.891
33 H 0.246 0.754
34 H 0.080 0.920
35 H 0.102 0.898
36 H 0.069 0.931
37 H 0.096 0.904
38 H 0.009 0.991
39 H 0.062 0.938
40 H 0.058 0.942
41 H 0.051 0.949
42 H 0.055 0.945
43 H 0.068 0.932
44 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -10.128 4.511 16.973 20.273
hybrid contribution 1.131 0.383 -0.678 1.373
sum -8.997 4.894 16.294 19.246
Atomic orbital electron populations
1.21658 0.92273 1.02005 1.02387 1.20875 0.97845 0.97173 0.92736
1.21877 1.01830 0.92531 1.03301 1.21874 1.01917 1.00031 0.95582
1.21326 0.82104 0.78742 0.87750 1.90660 1.56462 1.50717 1.49138
1.46292 1.07105 1.58127 1.25059 1.19696 0.95422 0.94004 0.84627
0.92600 1.21117 0.95677 0.97646 0.99342 1.21834 1.00363 0.97780
0.96902 1.20785 0.96575 0.85162 0.91195 1.43835 1.00892 1.15840
1.71683 1.19475 0.95988 0.89058 1.34938 0.91880 1.25744 1.01849
0.97698 0.98768 1.70243 1.24124 1.16626 1.47052 0.85321 0.79697
0.79043 0.76780 1.21019 1.22468 1.19502 1.20652 0.85007 0.96613
0.94594 1.21575 0.99687 0.98959 0.97130 0.93733 0.93425 0.89332
0.88993 0.91285 0.93444 0.93006 0.91094 0.89106 0.75373 0.91968
0.89819 0.93054 0.90370 0.99067 0.93751 0.94217 0.94860 0.94475
0.93222 0.92559
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.39 7.76 71.98 0.56 -1.83 16
2 C -0.08 -1.55 0.87 -52.93 -0.05 -1.59 16
3 C -0.14 -2.04 8.37 71.98 0.60 -1.44 16
4 C -0.14 -1.83 8.37 71.98 0.60 -1.23 16
5 C 0.51 14.24 6.32 87.66 0.55 14.79 16
6 O -0.59 -21.92 15.48 -3.03 -0.05 -21.97 16
7 N -0.71 -18.55 4.67 -452.06 -2.11 -20.66 16
8 C 0.17 5.46 1.96 43.01 0.08 5.54 16
9 H 0.06 2.08 6.65 -2.39 -0.02 2.06 16
10 C -0.10 -3.18 5.00 29.76 0.15 -3.03 16
11 C -0.13 -4.69 5.71 30.23 0.17 -4.52 16
12 C 0.19 9.00 4.67 86.49 0.40 9.40 16
13 N -0.60 -29.87 2.27 -698.36 -1.58 -31.46 16
14 C -0.26 -14.36 9.42 84.03 0.79 -13.56 16
15 H 0.06 3.38 7.88 -2.91 -0.02 3.36 16
16 C -0.04 -2.49 4.83 84.86 0.41 -2.08 16
17 N -0.93 -54.99 11.13 21.65 0.24 -54.75 16
18 Si 0.96 44.46 29.59 68.60 2.03 46.49 16
19 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16
20 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16
21 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16
22 C 0.16 6.97 5.66 87.38 0.49 7.47 16
23 C -0.13 -4.91 5.20 29.39 0.15 -4.76 16
24 H 0.04 0.99 8.10 -2.39 -0.02 0.97 16
25 H 0.05 1.02 8.10 -2.39 -0.02 1.01 16
26 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16
27 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16
28 H 0.07 0.92 7.57 -2.39 -0.02 0.90 16
29 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16
30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16
31 H 0.07 0.81 7.56 -2.39 -0.02 0.80 16
32 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16
33 H 0.41 8.16 7.45 -92.71 -0.69 7.47 16
34 H 0.06 2.26 7.48 -2.39 -0.02 2.24 16
35 H 0.08 2.13 8.05 -2.39 -0.02 2.11 16
36 H 0.05 1.83 7.31 -2.38 -0.02 1.81 16
37 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16
38 H -0.01 -0.47 8.03 -2.39 -0.02 -0.49 16
39 H 0.04 2.35 6.42 -2.39 -0.02 2.34 16
40 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16
41 H 0.03 1.44 8.06 -2.39 -0.02 1.42 16
42 H 0.04 1.67 7.99 -2.39 -0.02 1.66 16
43 H 0.05 1.86 7.95 -2.39 -0.02 1.84 16
44 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16
Total: -1.00 -67.55 338.50 3.72 -63.82
By element:
Atomic # 1 Polarization: 15.10 SS G_CDS: 0.26 Total: 15.36 kcal
Atomic # 6 Polarization: -1.77 SS G_CDS: 4.93 Total: 3.16 kcal
Atomic # 7 Polarization: -103.42 SS G_CDS: -3.45 Total: -106.87 kcal
Atomic # 8 Polarization: -21.92 SS G_CDS: -0.05 Total: -21.97 kcal
Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal
Total: -67.55 3.72 -63.82 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001052886761.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.826 kcal
(2) G-P(sol) polarization free energy of solvation -67.545 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.719 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.821 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.995 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds