Wall clock time and date at job start Mon Mar 30 2020 00:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47171 * 2 1 4 4 C 1.53007 * 109.46972 * 120.00325 * 2 1 3 5 5 C 1.50697 * 109.47014 * 239.99775 * 2 1 3 6 6 O 1.21280 * 120.00012 * 0.02562 * 5 2 1 7 7 N 1.34778 * 119.99790 * 180.02562 * 5 2 1 8 8 C 1.46500 * 119.99814 * 180.02562 * 7 5 2 9 9 H 1.09000 * 108.44796 * 327.30579 * 8 7 5 10 10 C 1.52569 * 108.51009 * 209.76539 * 8 7 5 11 11 C 1.50883 * 109.35933 * 153.73601 * 10 8 7 12 12 C 1.53948 * 110.09881 * 91.88287 * 11 10 8 13 13 N 1.47601 * 112.13862 * 319.43790 * 12 11 10 14 14 C 1.36937 * 118.63918 * 137.84700 * 13 12 11 15 15 H 1.08007 * 120.00128 * 207.15716 * 14 13 12 16 16 C 1.38813 * 120.00554 * 27.15721 * 14 13 12 17 17 N 1.31623 * 119.99606 * 16.72347 * 16 14 13 18 18 Si 1.86800 * 120.00212 * 196.73081 * 16 14 13 19 19 H 1.48501 * 109.47062 * 93.99713 * 18 16 14 20 20 H 1.48497 * 109.46940 * 213.99688 * 18 16 14 21 21 H 1.48505 * 109.46883 * 333.99266 * 18 16 14 22 22 C 1.44576 * 122.71685 * 317.86294 * 13 12 11 23 23 C 1.47090 * 108.51400 * 84.99988 * 8 7 5 24 24 H 1.08997 * 109.47082 * 60.00033 * 1 2 3 25 25 H 1.09000 * 109.47502 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47490 * 299.99711 * 1 2 3 27 27 H 1.09005 * 109.46610 * 60.00248 * 3 2 1 28 28 H 1.09001 * 109.46983 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47091 * 299.99961 * 3 2 1 30 30 H 1.09000 * 109.47108 * 59.99635 * 4 2 1 31 31 H 1.08998 * 109.46635 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.46677 * 299.99895 * 4 2 1 33 33 H 0.97000 * 120.00432 * 0.02562 * 7 5 2 34 34 H 1.09001 * 109.49267 * 273.69471 * 10 8 7 35 35 H 1.09000 * 109.49057 * 33.76873 * 10 8 7 36 36 H 1.09005 * 109.36217 * 331.69188 * 11 10 8 37 37 H 1.09002 * 109.36662 * 212.08261 * 11 10 8 38 38 H 1.08995 * 108.94916 * 198.75010 * 12 11 10 39 39 H 1.09003 * 108.87434 * 80.07470 * 12 11 10 40 40 H 0.96995 * 119.99597 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.44744 * 330.69128 * 22 13 12 42 42 H 1.09001 * 109.43327 * 210.75621 * 22 13 12 43 43 H 1.08996 * 109.33137 * 304.31182 * 23 8 7 44 44 H 1.08999 * 109.33178 * 63.79383 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2493 5 6 2.0323 -0.7104 -1.2304 6 8 1.2442 -1.1710 -2.0289 7 7 3.3574 -0.8340 -1.4434 8 6 3.8457 -1.5242 -2.6398 9 1 3.1400 -2.3151 -2.8940 10 6 5.1909 -2.1660 -2.3137 11 6 5.4087 -3.3565 -3.2148 12 6 6.1701 -2.9282 -4.4824 13 7 5.7012 -1.6280 -5.0003 14 6 6.6302 -0.7227 -5.4391 15 1 6.4116 0.3345 -5.4063 16 6 7.8531 -1.1636 -5.9260 17 7 8.0065 -2.4231 -6.2762 18 14 9.2810 0.0304 -6.0840 19 1 10.1205 -0.0373 -4.8609 20 1 10.1008 -0.3323 -7.2678 21 1 8.7566 1.4100 -6.2489 22 6 4.3017 -1.2706 -5.0631 23 6 3.8875 -0.5607 -3.7505 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6767 1.9562 0.8901 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 -1.7490 1.2492 31 1 3.1300 -0.7209 1.2494 32 1 1.6766 -0.2075 2.1393 33 1 3.9878 -0.4660 -0.8046 34 1 5.9882 -1.4398 -2.4717 35 1 5.1958 -2.4915 -1.2734 36 1 4.4436 -3.7770 -3.4975 37 1 5.9878 -4.1113 -2.6828 38 1 6.0306 -3.6870 -5.2523 39 1 7.2319 -2.8536 -4.2476 40 1 8.8609 -2.7311 -6.6168 41 1 3.7025 -2.1718 -5.1931 42 1 4.1362 -0.5999 -5.9063 43 1 2.9015 -0.1139 -3.8778 44 1 4.6092 0.2233 -3.5211 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052886761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:30 Heat of formation + Delta-G solvation = -53.995457 kcal Electronic energy + Delta-G solvation = -21917.343236 eV Core-core repulsion = 18868.705321 eV Total energy + Delta-G solvation = -3048.637915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.42463 -39.41648 -36.66282 -36.31375 -34.02534 -33.32585 -31.60660 -28.20172 -28.15715 -27.77931 -25.85575 -25.25111 -23.47833 -21.54871 -21.14652 -20.09710 -18.58440 -17.71011 -17.34098 -16.96893 -16.12011 -15.84170 -15.60942 -15.29022 -15.18645 -14.78863 -14.58784 -14.22491 -14.02656 -13.61043 -13.27325 -13.22408 -13.03563 -13.02027 -12.84216 -12.71800 -12.60750 -12.40742 -12.10547 -12.03764 -11.88114 -11.84319 -11.74548 -11.51453 -11.50836 -11.35483 -10.59279 -10.43080 -10.03234 -8.64772 -7.84155 -5.31036 1.47645 1.48921 1.57978 1.71615 2.25822 2.53137 3.29273 3.63440 3.66885 3.77720 3.88453 3.96323 4.11859 4.30042 4.33389 4.43818 4.44295 4.67224 4.73368 4.74829 4.77047 4.84770 4.94252 4.96738 4.98089 4.98437 5.03623 5.11771 5.14354 5.22333 5.24837 5.33600 5.36092 5.37736 5.48920 5.57466 5.61506 5.69216 5.80357 6.42284 6.65068 7.20036 7.33784 7.94986 8.35637 9.21199 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030417 B = 0.004620 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.310187 B = 6059.476439 C = 6304.996088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.083 4.083 3 C -0.138 4.138 4 C -0.137 4.137 5 C 0.513 3.487 6 O -0.590 6.590 7 N -0.715 5.715 8 C 0.167 3.833 9 H 0.056 0.944 10 C -0.100 4.100 11 C -0.130 4.130 12 C 0.188 3.812 13 N -0.600 5.600 14 C -0.264 4.264 15 H 0.063 0.937 16 C -0.045 4.045 17 N -0.935 5.935 18 Si 0.963 3.037 19 H -0.284 1.284 20 H -0.298 1.298 21 H -0.270 1.270 22 C 0.159 3.841 23 C -0.132 4.132 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.410 0.590 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.078 0.922 38 H -0.009 1.009 39 H 0.044 0.956 40 H 0.249 0.751 41 H 0.033 0.967 42 H 0.037 0.963 43 H 0.049 0.951 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.696 4.940 17.612 20.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.086 4.086 3 C -0.195 4.195 4 C -0.194 4.194 5 C 0.301 3.699 6 O -0.470 6.470 7 N -0.366 5.366 8 C 0.063 3.937 9 H 0.074 0.926 10 C -0.138 4.138 11 C -0.169 4.169 12 C 0.063 3.937 13 N -0.322 5.322 14 C -0.395 4.395 15 H 0.081 0.919 16 C -0.241 4.241 17 N -0.580 5.580 18 Si 0.792 3.208 19 H -0.210 1.210 20 H -0.225 1.225 21 H -0.195 1.195 22 C 0.031 3.969 23 C -0.174 4.174 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.246 0.754 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.009 0.991 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.128 4.511 16.973 20.273 hybrid contribution 1.131 0.383 -0.678 1.373 sum -8.997 4.894 16.294 19.246 Atomic orbital electron populations 1.21658 0.92273 1.02005 1.02387 1.20875 0.97845 0.97173 0.92736 1.21877 1.01830 0.92531 1.03301 1.21874 1.01917 1.00031 0.95582 1.21326 0.82104 0.78742 0.87750 1.90660 1.56462 1.50717 1.49138 1.46292 1.07105 1.58127 1.25059 1.19696 0.95422 0.94004 0.84627 0.92600 1.21117 0.95677 0.97646 0.99342 1.21834 1.00363 0.97780 0.96902 1.20785 0.96575 0.85162 0.91195 1.43835 1.00892 1.15840 1.71683 1.19475 0.95988 0.89058 1.34938 0.91880 1.25744 1.01849 0.97698 0.98768 1.70243 1.24124 1.16626 1.47052 0.85321 0.79697 0.79043 0.76780 1.21019 1.22468 1.19502 1.20652 0.85007 0.96613 0.94594 1.21575 0.99687 0.98959 0.97130 0.93733 0.93425 0.89332 0.88993 0.91285 0.93444 0.93006 0.91094 0.89106 0.75373 0.91968 0.89819 0.93054 0.90370 0.99067 0.93751 0.94217 0.94860 0.94475 0.93222 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 7.76 71.98 0.56 -1.83 16 2 C -0.08 -1.55 0.87 -52.93 -0.05 -1.59 16 3 C -0.14 -2.04 8.37 71.98 0.60 -1.44 16 4 C -0.14 -1.83 8.37 71.98 0.60 -1.23 16 5 C 0.51 14.24 6.32 87.66 0.55 14.79 16 6 O -0.59 -21.92 15.48 -3.03 -0.05 -21.97 16 7 N -0.71 -18.55 4.67 -452.06 -2.11 -20.66 16 8 C 0.17 5.46 1.96 43.01 0.08 5.54 16 9 H 0.06 2.08 6.65 -2.39 -0.02 2.06 16 10 C -0.10 -3.18 5.00 29.76 0.15 -3.03 16 11 C -0.13 -4.69 5.71 30.23 0.17 -4.52 16 12 C 0.19 9.00 4.67 86.49 0.40 9.40 16 13 N -0.60 -29.87 2.27 -698.36 -1.58 -31.46 16 14 C -0.26 -14.36 9.42 84.03 0.79 -13.56 16 15 H 0.06 3.38 7.88 -2.91 -0.02 3.36 16 16 C -0.04 -2.49 4.83 84.86 0.41 -2.08 16 17 N -0.93 -54.99 11.13 21.65 0.24 -54.75 16 18 Si 0.96 44.46 29.59 68.60 2.03 46.49 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 20 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 22 C 0.16 6.97 5.66 87.38 0.49 7.47 16 23 C -0.13 -4.91 5.20 29.39 0.15 -4.76 16 24 H 0.04 0.99 8.10 -2.39 -0.02 0.97 16 25 H 0.05 1.02 8.10 -2.39 -0.02 1.01 16 26 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.07 0.92 7.57 -2.39 -0.02 0.90 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.81 7.56 -2.39 -0.02 0.80 16 32 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.41 8.16 7.45 -92.71 -0.69 7.47 16 34 H 0.06 2.26 7.48 -2.39 -0.02 2.24 16 35 H 0.08 2.13 8.05 -2.39 -0.02 2.11 16 36 H 0.05 1.83 7.31 -2.38 -0.02 1.81 16 37 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 38 H -0.01 -0.47 8.03 -2.39 -0.02 -0.49 16 39 H 0.04 2.35 6.42 -2.39 -0.02 2.34 16 40 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 41 H 0.03 1.44 8.06 -2.39 -0.02 1.42 16 42 H 0.04 1.67 7.99 -2.39 -0.02 1.66 16 43 H 0.05 1.86 7.95 -2.39 -0.02 1.84 16 44 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -67.55 338.50 3.72 -63.82 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.26 Total: 15.36 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 4.93 Total: 3.16 kcal Atomic # 7 Polarization: -103.42 SS G_CDS: -3.45 Total: -106.87 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.05 Total: -21.97 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -67.55 3.72 -63.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052886761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.826 kcal (2) G-P(sol) polarization free energy of solvation -67.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds