Wall clock time and date at job start Mon Mar 30 2020 00:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47609 * 2 1 4 4 C 1.53001 * 109.46840 * 239.99560 * 2 1 3 5 5 C 1.50705 * 109.46638 * 120.00082 * 2 1 3 6 6 O 1.21276 * 120.00194 * 0.02562 * 5 2 1 7 7 N 1.34774 * 119.99648 * 179.97438 * 5 2 1 8 8 C 1.46502 * 120.00069 * 180.02562 * 7 5 2 9 9 H 1.09002 * 110.20832 * 36.93227 * 8 7 5 10 10 C 1.50122 * 110.37141 * 158.95064 * 8 7 5 11 11 C 1.54850 * 110.81576 * 216.72045 * 10 8 7 12 12 C 1.54899 * 110.13712 * 321.13049 * 11 10 8 13 13 N 1.43400 * 116.15028 * 318.64604 * 12 11 10 14 14 C 1.36937 * 120.52046 * 271.57312 * 13 12 11 15 15 H 1.08000 * 120.00488 * 140.13337 * 14 13 12 16 16 C 1.38819 * 119.99576 * 320.12718 * 14 13 12 17 17 N 1.31619 * 119.99380 * 156.35234 * 16 14 13 18 18 Si 1.86797 * 120.00286 * 336.35360 * 16 14 13 19 19 H 1.48496 * 109.47078 * 95.56716 * 18 16 14 20 20 H 1.48501 * 109.47129 * 215.56745 * 18 16 14 21 21 H 1.48499 * 109.46935 * 335.56796 * 18 16 14 22 22 C 1.50170 * 118.94516 * 91.45544 * 13 12 11 23 23 C 1.46233 * 107.58902 * 289.71189 * 22 13 12 24 24 H 1.09000 * 109.47059 * 300.00416 * 1 2 3 25 25 H 1.09001 * 109.47063 * 59.99761 * 1 2 3 26 26 H 1.08995 * 109.47359 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47134 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47104 * 300.00214 * 3 2 1 29 29 H 1.09007 * 109.46855 * 59.99580 * 3 2 1 30 30 H 1.08995 * 109.47457 * 300.00322 * 4 2 1 31 31 H 1.09005 * 109.47013 * 60.00904 * 4 2 1 32 32 H 1.09000 * 109.46679 * 180.02562 * 4 2 1 33 33 H 0.97005 * 120.00023 * 359.97438 * 7 5 2 34 34 H 1.08999 * 109.21040 * 337.05781 * 10 8 7 35 35 H 1.08993 * 109.20960 * 96.42245 * 10 8 7 36 36 H 1.09002 * 109.35652 * 81.33807 * 11 10 8 37 37 H 1.09000 * 109.36020 * 200.92741 * 11 10 8 38 38 H 1.09006 * 108.16002 * 80.36353 * 12 11 10 39 39 H 1.09001 * 108.15607 * 197.13258 * 12 11 10 40 40 H 0.97005 * 119.99711 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.84536 * 170.17194 * 22 13 12 42 42 H 1.09002 * 109.84319 * 49.25244 * 22 13 12 43 43 H 1.08998 * 108.52482 * 179.61282 * 23 22 13 44 44 H 1.08999 * 108.52730 * 297.13369 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 2.0322 -0.7105 1.2305 6 8 1.2441 -1.1718 2.0286 7 7 3.3573 -0.8341 1.4436 8 6 3.8456 -1.5252 2.6395 9 1 3.2000 -2.3712 2.8755 10 6 5.2579 -1.9908 2.4339 11 6 5.4895 -3.3627 3.1135 12 6 4.7453 -3.4178 4.4709 13 7 4.8068 -2.2314 5.2740 14 6 5.8333 -2.0443 6.1608 15 1 6.2763 -1.0661 6.2757 16 6 6.3043 -3.1121 6.9125 17 7 7.5289 -3.0881 7.3943 18 14 5.2003 -4.5830 7.2399 19 1 5.4764 -5.6422 6.2364 20 1 5.4686 -5.1097 8.6022 21 1 3.7784 -4.1662 7.1414 22 6 3.7291 -1.1962 5.1249 23 6 3.9044 -0.5607 3.8196 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4423 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1299 -0.7217 -1.2490 33 1 3.9877 -0.4661 0.8047 34 1 5.4534 -2.0824 1.3655 35 1 5.9427 -1.2590 2.8623 36 1 5.1164 -4.1550 2.4644 37 1 6.5568 -3.5077 3.2804 38 1 3.6965 -3.6404 4.2746 39 1 5.1614 -4.2400 5.0532 40 1 7.8580 -3.8341 7.9199 41 1 3.8204 -0.4507 5.9147 42 1 2.7497 -1.6718 5.1764 43 1 3.1244 0.1900 3.6924 44 1 4.8707 -0.0565 3.8068 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052886762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:33 Heat of formation + Delta-G solvation = -26.157911 kcal Electronic energy + Delta-G solvation = -22025.904933 eV Core-core repulsion = 18978.474145 eV Total energy + Delta-G solvation = -3047.430788 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.28491 -38.16307 -35.64904 -34.79112 -32.30642 -31.84301 -30.56928 -27.59481 -27.34704 -26.28252 -24.53252 -23.28487 -22.49978 -20.15031 -19.77576 -19.00942 -16.75668 -16.48246 -16.23419 -15.17886 -15.10917 -14.58235 -14.19631 -14.07205 -14.06618 -13.79664 -13.17135 -12.89302 -12.57090 -12.54190 -12.42338 -12.13772 -12.00431 -11.92600 -11.77494 -11.64007 -11.16435 -11.13358 -11.04306 -10.71195 -10.49931 -10.45861 -10.08619 -9.91742 -9.65162 -9.54778 -9.38815 -8.77518 -8.41842 -6.70832 -5.98490 -3.40353 2.77307 3.29916 3.36179 3.50485 3.59187 4.49111 4.56786 4.57625 4.67913 4.94004 5.06500 5.24334 5.30132 5.32433 5.36477 5.40710 5.47010 5.57948 5.60653 5.66423 5.71175 5.84247 5.94045 5.94431 5.94867 5.99148 6.12417 6.24752 6.31444 6.34682 6.52257 6.56698 6.70956 6.79993 6.81969 6.91547 6.94187 7.02328 7.67674 8.12152 8.38865 8.39380 9.05322 9.74877 10.21064 11.17077 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036527 B = 0.004724 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.370318 B = 5926.125884 C = 5980.098035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.089 4.089 3 C -0.140 4.140 4 C -0.140 4.140 5 C 0.519 3.481 6 O -0.538 6.538 7 N -0.721 5.721 8 C 0.148 3.852 9 H 0.091 0.909 10 C -0.112 4.112 11 C -0.137 4.137 12 C 0.146 3.854 13 N -0.600 5.600 14 C -0.266 4.266 15 H 0.074 0.926 16 C 0.040 3.960 17 N -0.898 5.898 18 Si 0.876 3.124 19 H -0.286 1.286 20 H -0.302 1.302 21 H -0.269 1.269 22 C 0.139 3.861 23 C -0.135 4.135 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.394 0.606 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.064 0.936 38 H 0.029 0.971 39 H 0.043 0.957 40 H 0.263 0.737 41 H 0.068 0.932 42 H 0.034 0.966 43 H 0.046 0.954 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.369 6.385 -17.795 21.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.092 4.092 3 C -0.197 4.197 4 C -0.197 4.197 5 C 0.304 3.696 6 O -0.414 6.414 7 N -0.372 5.372 8 C 0.045 3.955 9 H 0.109 0.891 10 C -0.150 4.150 11 C -0.178 4.178 12 C 0.018 3.982 13 N -0.323 5.323 14 C -0.395 4.395 15 H 0.092 0.908 16 C -0.160 4.160 17 N -0.539 5.539 18 Si 0.706 3.294 19 H -0.214 1.214 20 H -0.230 1.230 21 H -0.194 1.194 22 C 0.015 3.985 23 C -0.175 4.175 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.228 0.772 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.052 0.948 43 H 0.065 0.935 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.805 5.988 -17.057 20.566 hybrid contribution -0.042 -0.710 -0.086 0.717 sum -9.848 5.277 -17.144 20.463 Atomic orbital electron populations 1.21645 0.92129 1.02792 1.01852 1.20834 0.97992 0.96414 0.93946 1.21857 1.01234 0.93871 1.02758 1.21857 1.01202 1.00637 0.96015 1.20499 0.82472 0.79553 0.87051 1.90700 1.55330 1.48295 1.47093 1.46280 1.06786 1.58719 1.25379 1.20351 0.96013 0.95191 0.83955 0.89119 1.21681 0.95055 0.99403 0.98900 1.22745 1.02103 0.94629 0.98301 1.20690 0.96482 0.90449 0.90599 1.44191 1.25554 1.20368 1.42186 1.18702 1.07937 0.97584 1.15282 0.90808 1.25522 0.95826 0.98172 0.96529 1.69897 1.14360 1.32324 1.37322 0.86923 0.83074 0.83144 0.76304 1.21384 1.22951 1.19385 1.20369 0.91131 0.92502 0.94498 1.21280 1.01425 0.98409 0.96419 0.91923 0.92277 0.91979 0.92123 0.91552 0.91980 0.92062 0.91535 0.92154 0.77177 0.93386 0.90735 0.93214 0.91728 0.95253 0.93954 0.92759 0.91396 0.94819 0.93538 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 7.76 37.16 0.29 -0.97 16 2 C -0.09 -0.87 0.87 -155.66 -0.14 -1.01 16 3 C -0.14 -1.13 8.37 37.16 0.31 -0.81 16 4 C -0.14 -1.10 8.37 37.16 0.31 -0.79 16 5 C 0.52 7.20 6.34 -10.98 -0.07 7.13 16 6 O -0.54 -9.81 15.70 5.56 0.09 -9.72 16 7 N -0.72 -9.37 4.80 -55.44 -0.27 -9.64 16 8 C 0.15 2.41 2.17 -69.60 -0.15 2.26 16 9 H 0.09 1.70 5.82 -51.93 -0.30 1.40 16 10 C -0.11 -1.81 5.31 -27.19 -0.14 -1.95 16 11 C -0.14 -2.54 6.41 -24.75 -0.16 -2.70 16 12 C 0.15 3.23 4.21 -4.68 -0.02 3.21 16 13 N -0.60 -14.29 2.14 -175.10 -0.37 -14.67 16 14 C -0.27 -7.41 9.92 -15.06 -0.15 -7.56 16 15 H 0.07 2.21 8.06 -52.49 -0.42 1.78 16 16 C 0.04 1.17 5.28 -17.43 -0.09 1.07 16 17 N -0.90 -27.33 13.97 55.49 0.78 -26.56 16 18 Si 0.88 22.62 25.27 -169.99 -4.30 18.33 16 19 H -0.29 -7.20 6.74 56.52 0.38 -6.82 16 20 H -0.30 -7.87 7.11 56.52 0.40 -7.46 16 21 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 22 C 0.14 2.87 6.11 -5.21 -0.03 2.84 16 23 C -0.14 -2.39 4.91 -30.19 -0.15 -2.54 16 24 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.06 0.44 7.57 -51.93 -0.39 0.05 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.42 7.56 -51.93 -0.39 0.03 16 33 H 0.39 4.01 7.29 -40.82 -0.30 3.71 16 34 H 0.05 0.64 7.81 -51.93 -0.41 0.24 16 35 H 0.07 1.31 6.82 -51.93 -0.35 0.95 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.03 0.62 6.89 -51.93 -0.36 0.26 16 39 H 0.04 1.04 3.40 -51.93 -0.18 0.86 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.07 1.40 7.99 -51.93 -0.42 0.98 16 42 H 0.03 0.70 8.13 -51.93 -0.42 0.28 16 43 H 0.05 0.79 7.90 -51.93 -0.41 0.38 16 44 H 0.06 1.15 6.93 -51.93 -0.36 0.79 16 LS Contribution 332.52 15.07 5.01 5.01 Total: -1.00 -31.97 332.52 -6.92 -38.89 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.67 Total: 0.17 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -0.19 Total: -1.81 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.13 Total: -50.86 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.30 Total: 18.33 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.97 -6.92 -38.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052886762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.731 kcal (2) G-P(sol) polarization free energy of solvation -31.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds