Wall clock time and date at job start Mon Mar 30 2020 00:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47609 * 2 1 4 4 C 1.53001 * 109.46840 * 239.99560 * 2 1 3 5 5 C 1.50705 * 109.46638 * 120.00082 * 2 1 3 6 6 O 1.21276 * 120.00194 * 0.02562 * 5 2 1 7 7 N 1.34774 * 119.99648 * 179.97438 * 5 2 1 8 8 C 1.46502 * 120.00069 * 180.02562 * 7 5 2 9 9 H 1.09002 * 110.20832 * 36.93227 * 8 7 5 10 10 C 1.50122 * 110.37141 * 158.95064 * 8 7 5 11 11 C 1.54850 * 110.81576 * 216.72045 * 10 8 7 12 12 C 1.54899 * 110.13712 * 321.13049 * 11 10 8 13 13 N 1.43400 * 116.15028 * 318.64604 * 12 11 10 14 14 C 1.36937 * 120.52046 * 271.57312 * 13 12 11 15 15 H 1.08000 * 120.00488 * 140.13337 * 14 13 12 16 16 C 1.38819 * 119.99576 * 320.12718 * 14 13 12 17 17 N 1.31619 * 119.99380 * 156.35234 * 16 14 13 18 18 Si 1.86797 * 120.00286 * 336.35360 * 16 14 13 19 19 H 1.48496 * 109.47078 * 95.56716 * 18 16 14 20 20 H 1.48501 * 109.47129 * 215.56745 * 18 16 14 21 21 H 1.48499 * 109.46935 * 335.56796 * 18 16 14 22 22 C 1.50170 * 118.94516 * 91.45544 * 13 12 11 23 23 C 1.46233 * 107.58902 * 289.71189 * 22 13 12 24 24 H 1.09000 * 109.47059 * 300.00416 * 1 2 3 25 25 H 1.09001 * 109.47063 * 59.99761 * 1 2 3 26 26 H 1.08995 * 109.47359 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47134 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47104 * 300.00214 * 3 2 1 29 29 H 1.09007 * 109.46855 * 59.99580 * 3 2 1 30 30 H 1.08995 * 109.47457 * 300.00322 * 4 2 1 31 31 H 1.09005 * 109.47013 * 60.00904 * 4 2 1 32 32 H 1.09000 * 109.46679 * 180.02562 * 4 2 1 33 33 H 0.97005 * 120.00023 * 359.97438 * 7 5 2 34 34 H 1.08999 * 109.21040 * 337.05781 * 10 8 7 35 35 H 1.08993 * 109.20960 * 96.42245 * 10 8 7 36 36 H 1.09002 * 109.35652 * 81.33807 * 11 10 8 37 37 H 1.09000 * 109.36020 * 200.92741 * 11 10 8 38 38 H 1.09006 * 108.16002 * 80.36353 * 12 11 10 39 39 H 1.09001 * 108.15607 * 197.13258 * 12 11 10 40 40 H 0.97005 * 119.99711 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.84536 * 170.17194 * 22 13 12 42 42 H 1.09002 * 109.84319 * 49.25244 * 22 13 12 43 43 H 1.08998 * 108.52482 * 179.61282 * 23 22 13 44 44 H 1.08999 * 108.52730 * 297.13369 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 2.0322 -0.7105 1.2305 6 8 1.2441 -1.1718 2.0286 7 7 3.3573 -0.8341 1.4436 8 6 3.8456 -1.5252 2.6395 9 1 3.2000 -2.3712 2.8755 10 6 5.2579 -1.9908 2.4339 11 6 5.4895 -3.3627 3.1135 12 6 4.7453 -3.4178 4.4709 13 7 4.8068 -2.2314 5.2740 14 6 5.8333 -2.0443 6.1608 15 1 6.2763 -1.0661 6.2757 16 6 6.3043 -3.1121 6.9125 17 7 7.5289 -3.0881 7.3943 18 14 5.2003 -4.5830 7.2399 19 1 5.4764 -5.6422 6.2364 20 1 5.4686 -5.1097 8.6022 21 1 3.7784 -4.1662 7.1414 22 6 3.7291 -1.1962 5.1249 23 6 3.9044 -0.5607 3.8196 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4423 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1299 -0.7217 -1.2490 33 1 3.9877 -0.4661 0.8047 34 1 5.4534 -2.0824 1.3655 35 1 5.9427 -1.2590 2.8623 36 1 5.1164 -4.1550 2.4644 37 1 6.5568 -3.5077 3.2804 38 1 3.6965 -3.6404 4.2746 39 1 5.1614 -4.2400 5.0532 40 1 7.8580 -3.8341 7.9199 41 1 3.8204 -0.4507 5.9147 42 1 2.7497 -1.6718 5.1764 43 1 3.1244 0.1900 3.6924 44 1 4.8707 -0.0565 3.8068 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052886762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:32 Heat of formation + Delta-G solvation = -47.082894 kcal Electronic energy + Delta-G solvation = -22026.812309 eV Core-core repulsion = 18978.474145 eV Total energy + Delta-G solvation = -3048.338164 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.42703 -39.63254 -36.62119 -36.31492 -34.12898 -33.44394 -32.25657 -28.28780 -28.18052 -27.84695 -25.98202 -25.13155 -23.64172 -21.67160 -21.36966 -20.12496 -18.43651 -17.86372 -17.60125 -16.83268 -16.31442 -16.16264 -15.58589 -15.40393 -15.15522 -14.88749 -14.69319 -14.36958 -14.28743 -13.81294 -13.55480 -13.28133 -13.22170 -13.02205 -12.88629 -12.73968 -12.59877 -12.52234 -12.31096 -12.02169 -11.89807 -11.86337 -11.82529 -11.61083 -11.39360 -11.24197 -10.58556 -10.56421 -10.01392 -8.69969 -8.22104 -5.60502 1.28667 1.38843 1.50977 1.70378 2.22877 2.41248 3.02207 3.27512 3.65196 3.80632 3.86234 3.95980 4.00076 4.14072 4.30479 4.37870 4.40231 4.46698 4.66931 4.73650 4.75869 4.81750 4.85526 4.88907 4.96405 4.97716 4.99467 5.03094 5.04999 5.10013 5.18224 5.25740 5.30818 5.37124 5.38037 5.42422 5.44951 5.65536 5.96041 6.16735 6.64185 7.00035 7.34006 7.61878 8.10699 8.97550 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036527 B = 0.004724 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.370318 B = 5926.125884 C = 5980.098035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.082 4.082 3 C -0.138 4.138 4 C -0.137 4.137 5 C 0.514 3.486 6 O -0.587 6.587 7 N -0.708 5.708 8 C 0.159 3.841 9 H 0.069 0.931 10 C -0.103 4.103 11 C -0.132 4.132 12 C 0.138 3.862 13 N -0.609 5.609 14 C -0.254 4.254 15 H 0.042 0.958 16 C -0.008 4.008 17 N -0.942 5.942 18 Si 0.935 3.065 19 H -0.275 1.275 20 H -0.305 1.305 21 H -0.270 1.270 22 C 0.140 3.860 23 C -0.127 4.127 24 H 0.044 0.956 25 H 0.088 0.912 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.412 0.588 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.039 0.961 39 H 0.019 0.981 40 H 0.263 0.737 41 H 0.061 0.939 42 H 0.033 0.967 43 H 0.053 0.947 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.214 6.747 -20.852 24.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.086 4.086 3 C -0.195 4.195 4 C -0.195 4.195 5 C 0.301 3.699 6 O -0.466 6.466 7 N -0.359 5.359 8 C 0.054 3.946 9 H 0.087 0.913 10 C -0.141 4.141 11 C -0.173 4.173 12 C 0.011 3.989 13 N -0.333 5.333 14 C -0.383 4.383 15 H 0.060 0.940 16 C -0.206 4.206 17 N -0.585 5.585 18 Si 0.764 3.236 19 H -0.202 1.202 20 H -0.233 1.233 21 H -0.195 1.195 22 C 0.017 3.983 23 C -0.167 4.167 24 H 0.063 0.937 25 H 0.106 0.894 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.249 0.751 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.037 0.963 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.655 6.364 -20.171 23.683 hybrid contribution 0.175 -0.749 0.839 1.138 sum -10.480 5.615 -19.332 22.696 Atomic orbital electron populations 1.21667 0.92428 1.01954 1.02401 1.20872 0.97738 0.97291 0.92653 1.21882 1.01965 0.92350 1.03335 1.21879 1.02021 0.99977 0.95583 1.21336 0.82059 0.78738 0.87731 1.90682 1.56501 1.50376 1.49074 1.46082 1.07138 1.58147 1.24574 1.20001 0.95708 0.94286 0.84617 0.91296 1.21555 0.94391 0.97328 1.00805 1.22651 1.00555 0.97275 0.96853 1.20795 0.97443 0.88804 0.91838 1.44267 1.25452 1.21464 1.42153 1.18583 1.08177 0.96186 1.15387 0.94001 1.26023 0.96646 1.00932 0.96951 1.69993 1.15872 1.33574 1.39076 0.85967 0.81047 0.80637 0.75963 1.20207 1.23333 1.19460 1.20434 0.90037 0.91699 0.96160 1.21117 1.01375 0.98601 0.95559 0.93703 0.89360 0.93548 0.90989 0.89090 0.93358 0.93145 0.89144 0.90878 0.75062 0.89654 0.92258 0.90379 0.93332 0.94237 0.96268 0.92752 0.92049 0.94855 0.92808 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 7.76 71.98 0.56 -1.73 16 2 C -0.08 -1.40 0.87 -52.93 -0.05 -1.44 16 3 C -0.14 -1.75 8.37 71.98 0.60 -1.14 16 4 C -0.14 -1.63 8.37 71.98 0.60 -1.03 16 5 C 0.51 13.34 6.34 87.66 0.56 13.89 16 6 O -0.59 -21.12 15.70 -3.02 -0.05 -21.17 16 7 N -0.71 -16.54 4.80 -447.71 -2.15 -18.69 16 8 C 0.16 4.86 2.17 43.91 0.10 4.96 16 9 H 0.07 2.49 5.82 -2.39 -0.01 2.47 16 10 C -0.10 -3.06 5.31 30.30 0.16 -2.90 16 11 C -0.13 -4.70 6.41 31.87 0.20 -4.49 16 12 C 0.14 6.01 4.21 87.60 0.37 6.38 16 13 N -0.61 -29.12 2.14 -707.90 -1.51 -30.64 16 14 C -0.25 -14.40 9.92 84.04 0.83 -13.57 16 15 H 0.04 2.61 8.06 -2.91 -0.02 2.59 16 16 C -0.01 -0.48 5.28 84.86 0.45 -0.03 16 17 N -0.94 -58.66 13.97 21.65 0.30 -58.36 16 18 Si 0.93 47.49 25.27 68.60 1.73 49.22 16 19 H -0.28 -13.35 6.74 99.48 0.67 -12.68 16 20 H -0.30 -15.53 7.11 99.48 0.71 -14.83 16 21 H -0.27 -13.57 7.11 99.48 0.71 -12.86 16 22 C 0.14 5.79 6.11 83.58 0.51 6.30 16 23 C -0.13 -4.37 4.91 28.36 0.14 -4.23 16 24 H 0.04 0.95 8.10 -2.39 -0.02 0.93 16 25 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 27 H 0.07 0.76 7.57 -2.39 -0.02 0.74 16 28 H 0.09 0.74 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.07 0.69 7.56 -2.39 -0.02 0.68 16 33 H 0.41 6.79 7.29 -92.70 -0.68 6.11 16 34 H 0.09 1.93 7.81 -2.39 -0.02 1.91 16 35 H 0.06 1.98 6.82 -2.39 -0.02 1.96 16 36 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.04 1.63 6.89 -2.38 -0.02 1.61 16 39 H 0.02 0.93 3.40 -2.39 -0.01 0.92 16 40 H 0.26 15.57 8.31 -92.70 -0.77 14.80 16 41 H 0.06 2.57 7.99 -2.39 -0.02 2.55 16 42 H 0.03 1.38 8.13 -2.39 -0.02 1.36 16 43 H 0.05 1.78 7.90 -2.39 -0.02 1.76 16 44 H 0.06 2.13 6.93 -2.39 -0.02 2.11 16 Total: -1.00 -71.18 332.52 3.62 -67.56 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.26 Total: 11.11 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 5.03 Total: 0.96 kcal Atomic # 7 Polarization: -104.33 SS G_CDS: -3.36 Total: -107.69 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.05 Total: -21.17 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 1.73 Total: 49.22 kcal Total: -71.18 3.62 -67.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052886762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.478 kcal (2) G-P(sol) polarization free energy of solvation -71.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds