Wall clock time and date at job start Mon Mar 30 2020 00:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46906 * 55.00224 * 4 3 2 6 6 C 1.53002 * 109.47278 * 295.00291 * 4 3 2 7 7 C 1.50699 * 109.47482 * 174.99860 * 4 3 2 8 8 O 1.21280 * 120.00011 * 0.02562 * 7 4 3 9 9 N 1.34776 * 120.00066 * 180.02562 * 7 4 3 10 10 C 1.46510 * 119.99903 * 180.02562 * 9 7 4 11 11 C 1.53000 * 109.46890 * 179.97438 * 10 9 7 12 12 C 1.53779 * 113.61739 * 274.13641 * 11 10 9 13 13 C 1.53948 * 87.01958 * 220.04980 * 12 11 10 14 14 N 1.46504 * 113.53964 * 270.80865 * 13 12 11 15 15 C 1.36931 * 120.00181 * 252.49803 * 14 13 12 16 16 H 1.08002 * 119.99870 * 359.97438 * 15 14 13 17 17 C 1.38813 * 120.00131 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99487 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99983 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47211 * 60.00294 * 19 17 15 21 21 H 1.48502 * 109.47008 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47004 * 299.99892 * 19 17 15 23 23 C 1.53776 * 113.61164 * 176.52581 * 11 10 9 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.09000 * 109.46593 * 299.99796 * 6 4 3 32 32 H 1.08998 * 109.46891 * 59.99794 * 6 4 3 33 33 H 1.09004 * 109.47334 * 179.97438 * 6 4 3 34 34 H 0.96998 * 120.00301 * 0.02562 * 9 7 4 35 35 H 1.08991 * 109.46739 * 299.99628 * 10 9 7 36 36 H 1.09002 * 109.47007 * 60.00010 * 10 9 7 37 37 H 1.09002 * 112.84947 * 45.33592 * 11 10 9 38 38 H 1.09004 * 113.61352 * 334.57229 * 12 11 10 39 39 H 1.08999 * 113.61295 * 105.47013 * 12 11 10 40 40 H 1.09007 * 113.74393 * 139.94214 * 13 12 11 41 41 H 0.96996 * 119.99628 * 72.49427 * 14 13 12 42 42 H 0.97006 * 119.99612 * 180.02562 * 18 17 15 43 43 H 1.09001 * 113.61982 * 254.53202 * 23 11 10 44 44 H 1.09000 * 113.61462 * 25.43632 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8427 6 6 4.0805 0.8327 1.3064 7 6 4.0722 2.8580 -0.1245 8 8 3.2840 3.7764 -0.2039 9 7 5.3972 3.1033 -0.1470 10 6 5.8855 4.4795 -0.2669 11 6 7.4155 4.4795 -0.2676 12 6 8.0323 4.4999 1.1409 13 6 9.0782 5.4811 0.5813 14 7 10.2591 4.8202 0.0199 15 6 11.4536 4.8697 0.6875 16 1 11.5253 5.3962 1.6277 17 6 12.5723 4.2430 0.1558 18 7 12.4849 3.6017 -0.9902 19 14 14.2020 4.3111 1.0662 20 1 14.0465 3.6910 2.4065 21 1 15.2317 3.5703 0.2940 22 1 14.6235 5.7265 1.2215 23 6 8.0313 5.8732 -0.4748 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.7175 1.4221 2.1484 32 1 3.7173 -0.1910 1.3959 33 1 5.1706 0.8324 1.3057 34 1 6.0276 2.3689 -0.0839 35 1 5.5213 4.9143 -1.1976 36 1 5.5229 5.0683 0.5757 37 1 7.8384 3.7141 -0.9184 38 1 7.3811 4.9397 1.8964 39 1 8.4514 3.5417 1.4479 40 1 9.3317 6.2903 1.2663 41 1 10.1947 4.3476 -0.8247 42 1 13.2666 3.1635 -1.3616 43 1 8.4498 6.0222 -1.4702 44 1 7.3800 6.6893 -0.1619 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100195224.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:58 Heat of formation + Delta-G solvation = -37.714729 kcal Electronic energy + Delta-G solvation = -20272.699547 eV Core-core repulsion = 17224.767618 eV Total energy + Delta-G solvation = -3047.931929 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.03104 -38.58215 -36.17481 -34.63433 -33.25051 -32.18311 -30.13637 -27.45851 -26.81024 -25.07228 -24.22524 -23.45137 -21.74229 -21.15987 -19.88645 -18.35620 -17.41003 -16.89310 -16.09314 -15.82482 -15.12388 -14.93960 -14.42135 -14.21797 -14.12862 -13.64846 -13.56769 -13.07842 -12.89101 -12.71258 -12.48556 -12.23855 -12.10993 -11.93048 -11.48815 -11.36701 -11.20040 -11.08669 -11.02029 -10.84424 -10.75361 -10.49214 -10.22208 -10.06575 -9.70710 -9.68274 -9.42727 -8.96274 -8.88589 -7.02216 -5.82704 -3.11752 2.66929 3.23299 3.40978 3.45523 3.46394 4.50726 4.53554 4.54131 4.66923 4.91958 4.99142 5.05036 5.06787 5.08882 5.22130 5.31356 5.42322 5.43625 5.53934 5.59621 5.62847 5.64057 5.69278 5.74429 5.84653 5.87310 5.90556 5.96836 6.08637 6.11112 6.16303 6.20586 6.36220 6.46151 6.58949 6.73096 6.89483 7.03046 7.55974 7.66593 8.26046 8.36571 9.47114 10.04700 10.38992 11.39688 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033224 B = 0.002952 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.551500 B = 9483.094243 C = 9960.447129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.100 4.100 4 C -0.112 4.112 5 H 0.096 0.904 6 C -0.146 4.146 7 C 0.513 3.487 8 O -0.548 6.548 9 N -0.724 5.724 10 C 0.130 3.870 11 C -0.119 4.119 12 C -0.168 4.168 13 C 0.167 3.833 14 N -0.706 5.706 15 C -0.243 4.243 16 H 0.072 0.928 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.909 3.091 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C -0.148 4.148 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.402 0.598 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.068 0.932 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.613 -6.188 2.071 20.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.138 4.138 4 C -0.134 4.134 5 H 0.114 0.886 6 C -0.204 4.204 7 C 0.299 3.701 8 O -0.426 6.426 9 N -0.375 5.375 10 C 0.007 3.993 11 C -0.138 4.138 12 C -0.209 4.209 13 C 0.055 3.945 14 N -0.344 5.344 15 C -0.374 4.374 16 H 0.090 0.910 17 C -0.209 4.209 18 N -0.581 5.581 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.188 4.188 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.236 0.764 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.975 -5.483 2.109 20.820 hybrid contribution 1.233 -0.574 0.147 1.368 sum -18.741 -6.056 2.255 19.824 Atomic orbital electron populations 1.21760 0.95825 1.01428 1.01960 1.21609 0.95970 0.96733 1.02095 1.21419 0.92342 0.96535 1.03477 1.21349 0.97798 0.93635 1.00594 0.88599 1.21835 1.01418 1.01276 0.95823 1.20677 0.82316 0.91277 0.75806 1.90677 1.55442 1.46551 1.49887 1.46108 1.06929 1.10092 1.74355 1.21462 0.94115 0.82290 1.01425 1.22703 0.91770 0.99586 0.99756 1.23905 0.99942 1.02502 0.94551 1.21094 0.86293 0.93533 0.93581 1.42163 1.04701 1.62299 1.25258 1.19248 0.86875 1.28221 1.03049 0.91046 1.24766 0.98177 1.00591 0.97356 1.69654 1.29660 1.39493 1.19310 0.86238 0.83508 0.77512 0.78750 1.21214 1.21675 1.21188 1.23440 0.98894 0.95107 1.01336 0.92855 0.92724 0.92717 0.91711 0.92021 0.91191 0.91356 0.92083 0.91260 0.91929 0.76379 0.91974 0.91715 0.88956 0.91460 0.91536 0.91976 0.78121 0.93382 0.91336 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.13 -0.92 5.69 -26.73 -0.15 -1.07 16 3 C -0.10 -0.93 4.03 -26.74 -0.11 -1.04 16 4 C -0.11 -1.05 2.72 -91.77 -0.25 -1.30 16 5 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 6 C -0.15 -1.17 8.84 37.16 0.33 -0.84 16 7 C 0.51 6.63 7.15 -10.99 -0.08 6.56 16 8 O -0.55 -9.13 15.92 5.56 0.09 -9.04 16 9 N -0.72 -8.85 5.45 -60.29 -0.33 -9.18 16 10 C 0.13 1.77 5.50 -4.04 -0.02 1.75 16 11 C -0.12 -1.78 3.62 -89.81 -0.33 -2.10 16 12 C -0.17 -2.77 7.44 -25.83 -0.19 -2.96 16 13 C 0.17 3.24 4.57 -67.03 -0.31 2.93 16 14 N -0.71 -17.25 5.31 -52.55 -0.28 -17.53 16 15 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 19 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 C -0.15 -2.37 7.39 -25.92 -0.19 -2.56 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.74 7.96 -51.93 -0.41 0.33 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.45 6.57 -51.93 -0.34 0.11 16 33 H 0.06 0.49 7.57 -51.93 -0.39 0.09 16 34 H 0.40 4.26 7.89 -40.82 -0.32 3.93 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.92 7.87 -51.93 -0.41 0.51 16 37 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 41 H 0.38 9.94 7.90 -40.82 -0.32 9.62 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 355.09 15.07 5.35 5.35 Total: -1.00 -30.97 355.09 -8.63 -39.60 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -7.99 Total: 9.27 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -1.18 Total: -8.56 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.12 Total: -53.65 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.97 -8.63 -39.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100195224.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.888 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds