Wall clock time and date at job start Mon Mar 30 2020 00:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46906 * 55.00224 * 4 3 2 6 6 C 1.53002 * 109.47278 * 295.00291 * 4 3 2 7 7 C 1.50699 * 109.47482 * 174.99860 * 4 3 2 8 8 O 1.21280 * 120.00011 * 0.02562 * 7 4 3 9 9 N 1.34776 * 120.00066 * 180.02562 * 7 4 3 10 10 C 1.46510 * 119.99903 * 180.02562 * 9 7 4 11 11 C 1.53000 * 109.46890 * 179.97438 * 10 9 7 12 12 C 1.53779 * 113.61739 * 274.13641 * 11 10 9 13 13 C 1.53948 * 87.01958 * 220.04980 * 12 11 10 14 14 N 1.46504 * 113.53964 * 270.80865 * 13 12 11 15 15 C 1.36931 * 120.00181 * 252.49803 * 14 13 12 16 16 H 1.08002 * 119.99870 * 359.97438 * 15 14 13 17 17 C 1.38813 * 120.00131 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99487 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99983 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47211 * 60.00294 * 19 17 15 21 21 H 1.48502 * 109.47008 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47004 * 299.99892 * 19 17 15 23 23 C 1.53776 * 113.61164 * 176.52581 * 11 10 9 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.09000 * 109.46593 * 299.99796 * 6 4 3 32 32 H 1.08998 * 109.46891 * 59.99794 * 6 4 3 33 33 H 1.09004 * 109.47334 * 179.97438 * 6 4 3 34 34 H 0.96998 * 120.00301 * 0.02562 * 9 7 4 35 35 H 1.08991 * 109.46739 * 299.99628 * 10 9 7 36 36 H 1.09002 * 109.47007 * 60.00010 * 10 9 7 37 37 H 1.09002 * 112.84947 * 45.33592 * 11 10 9 38 38 H 1.09004 * 113.61352 * 334.57229 * 12 11 10 39 39 H 1.08999 * 113.61295 * 105.47013 * 12 11 10 40 40 H 1.09007 * 113.74393 * 139.94214 * 13 12 11 41 41 H 0.96996 * 119.99628 * 72.49427 * 14 13 12 42 42 H 0.97006 * 119.99612 * 180.02562 * 18 17 15 43 43 H 1.09001 * 113.61982 * 254.53202 * 23 11 10 44 44 H 1.09000 * 113.61462 * 25.43632 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8427 6 6 4.0805 0.8327 1.3064 7 6 4.0722 2.8580 -0.1245 8 8 3.2840 3.7764 -0.2039 9 7 5.3972 3.1033 -0.1470 10 6 5.8855 4.4795 -0.2669 11 6 7.4155 4.4795 -0.2676 12 6 8.0323 4.4999 1.1409 13 6 9.0782 5.4811 0.5813 14 7 10.2591 4.8202 0.0199 15 6 11.4536 4.8697 0.6875 16 1 11.5253 5.3962 1.6277 17 6 12.5723 4.2430 0.1558 18 7 12.4849 3.6017 -0.9902 19 14 14.2020 4.3111 1.0662 20 1 14.0465 3.6910 2.4065 21 1 15.2317 3.5703 0.2940 22 1 14.6235 5.7265 1.2215 23 6 8.0313 5.8732 -0.4748 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.7175 1.4221 2.1484 32 1 3.7173 -0.1910 1.3959 33 1 5.1706 0.8324 1.3057 34 1 6.0276 2.3689 -0.0839 35 1 5.5213 4.9143 -1.1976 36 1 5.5229 5.0683 0.5757 37 1 7.8384 3.7141 -0.9184 38 1 7.3811 4.9397 1.8964 39 1 8.4514 3.5417 1.4479 40 1 9.3317 6.2903 1.2663 41 1 10.1947 4.3476 -0.8247 42 1 13.2666 3.1635 -1.3616 43 1 8.4498 6.0222 -1.4702 44 1 7.3800 6.6893 -0.1619 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100195224.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:58 Heat of formation + Delta-G solvation = -56.912206 kcal Electronic energy + Delta-G solvation = -20273.532012 eV Core-core repulsion = 17224.767618 eV Total energy + Delta-G solvation = -3048.764395 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.09385 -39.94665 -36.95098 -35.98590 -34.96506 -32.94390 -31.95901 -28.74787 -27.48549 -26.44377 -25.81587 -24.66928 -23.02197 -21.96121 -20.84626 -19.75366 -19.31965 -17.96052 -17.18485 -16.70486 -16.65655 -16.05630 -15.78820 -15.66064 -15.04778 -14.88209 -14.70988 -14.50996 -14.05293 -13.70268 -13.43478 -13.28022 -13.13850 -12.92045 -12.91450 -12.73656 -12.60864 -12.20143 -12.14000 -12.07983 -11.83698 -11.74041 -11.52586 -11.47542 -11.39245 -10.98985 -10.86025 -10.60267 -10.04114 -9.00041 -7.95230 -5.23529 1.48329 1.50752 1.56851 1.65830 2.24989 2.56067 3.37166 3.65839 3.72805 3.79621 3.80723 3.92628 3.97887 4.15514 4.31560 4.32126 4.38513 4.40122 4.41857 4.63233 4.72484 4.77453 4.82252 4.91495 4.92214 4.96012 4.98630 5.03685 5.11089 5.14144 5.23334 5.29916 5.31765 5.35755 5.44754 5.49254 5.52324 5.56685 5.65967 6.28339 6.57412 7.25901 7.33410 8.10418 8.32995 9.27836 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033224 B = 0.002952 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.551500 B = 9483.094243 C = 9960.447129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.097 4.097 4 C -0.106 4.106 5 H 0.115 0.885 6 C -0.143 4.143 7 C 0.509 3.491 8 O -0.589 6.589 9 N -0.719 5.719 10 C 0.139 3.861 11 C -0.101 4.101 12 C -0.152 4.152 13 C 0.144 3.856 14 N -0.719 5.719 15 C -0.244 4.244 16 H 0.076 0.924 17 C -0.075 4.075 18 N -0.969 5.969 19 Si 0.973 3.027 20 H -0.278 1.278 21 H -0.296 1.296 22 H -0.279 1.279 23 C -0.136 4.136 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.411 0.589 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.049 0.951 40 H 0.059 0.941 41 H 0.374 0.626 42 H 0.251 0.749 43 H 0.057 0.943 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.346 -6.857 2.980 21.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.135 4.135 4 C -0.127 4.127 5 H 0.133 0.867 6 C -0.200 4.200 7 C 0.297 3.703 8 O -0.470 6.470 9 N -0.370 5.370 10 C 0.015 3.985 11 C -0.120 4.120 12 C -0.192 4.192 13 C 0.034 3.966 14 N -0.358 5.358 15 C -0.375 4.375 16 H 0.094 0.906 17 C -0.267 4.267 18 N -0.619 5.619 19 Si 0.802 3.198 20 H -0.204 1.204 21 H -0.222 1.222 22 H -0.205 1.205 23 C -0.175 4.175 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.247 0.753 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.207 0.793 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.733 -6.142 3.054 21.838 hybrid contribution 1.387 -0.301 -0.112 1.424 sum -19.346 -6.443 2.941 20.601 Atomic orbital electron populations 1.21779 0.95680 1.02080 1.01619 1.21587 0.96107 0.95173 1.03029 1.21380 0.92381 0.97762 1.01960 1.21390 0.97687 0.91469 1.02196 0.86679 1.21838 1.01652 1.02088 0.94437 1.21328 0.81943 0.92374 0.74616 1.90659 1.56379 1.48113 1.51804 1.46069 1.07151 1.09891 1.73853 1.21266 0.92743 0.83148 1.01298 1.22482 0.92601 0.98610 0.98329 1.23718 0.98919 1.00736 0.95855 1.21418 0.85937 0.94138 0.95114 1.42290 1.05585 1.62921 1.24972 1.19632 0.87989 1.26923 1.02991 0.90602 1.25551 1.01526 1.01217 0.98433 1.69805 1.30131 1.41045 1.20960 0.85221 0.79400 0.77544 0.77653 1.20365 1.22246 1.20506 1.23349 0.97855 0.96627 0.99666 0.91677 0.93019 0.93199 0.90583 0.91168 0.92937 0.92738 0.92981 0.89236 0.91519 0.75272 0.92243 0.91749 0.90012 0.89212 0.93174 0.92263 0.79345 0.94000 0.92398 0.87804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 71.98 0.71 -1.18 16 2 C -0.12 -1.52 5.69 30.59 0.17 -1.34 16 3 C -0.10 -1.71 4.03 30.59 0.12 -1.59 16 4 C -0.11 -1.81 2.72 -11.54 -0.03 -1.84 16 5 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 6 C -0.14 -1.96 8.84 71.98 0.64 -1.33 16 7 C 0.51 12.62 7.15 87.66 0.63 13.24 16 8 O -0.59 -19.44 15.92 -3.03 -0.05 -19.49 16 9 N -0.72 -16.48 5.45 -463.05 -2.52 -19.00 16 10 C 0.14 3.55 5.50 86.38 0.48 4.03 16 11 C -0.10 -2.88 3.62 -10.27 -0.04 -2.92 16 12 C -0.15 -4.77 7.44 31.18 0.23 -4.54 16 13 C 0.14 5.45 4.57 45.58 0.21 5.66 16 14 N -0.72 -35.33 5.31 -320.16 -1.70 -37.03 16 15 C -0.24 -13.30 9.97 84.03 0.84 -12.46 16 16 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 17 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 18 N -0.97 -58.30 13.06 21.65 0.28 -58.01 16 19 Si 0.97 45.44 29.55 68.60 2.03 47.46 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 21 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 23 C -0.14 -4.15 7.39 31.12 0.23 -3.92 16 24 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.08 0.79 6.57 -2.39 -0.02 0.78 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 1.10 7.96 -2.39 -0.02 1.09 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.09 0.89 6.57 -2.39 -0.02 0.88 16 33 H 0.07 0.87 7.57 -2.38 -0.02 0.85 16 34 H 0.41 7.96 7.89 -92.71 -0.73 7.23 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 1.69 7.87 -2.39 -0.02 1.67 16 37 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.09 2.44 7.92 -2.39 -0.02 2.43 16 39 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.06 2.26 8.10 -2.38 -0.02 2.24 16 41 H 0.37 19.66 7.90 -92.71 -0.73 18.93 16 42 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 43 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.10 2.64 8.10 -2.39 -0.02 2.62 16 Total: -1.00 -66.71 355.09 2.20 -64.51 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: -0.50 Total: 33.52 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 4.66 Total: -11.96 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -3.94 Total: -114.04 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.05 Total: -19.49 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -66.71 2.20 -64.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100195224.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.596 kcal (2) G-P(sol) polarization free energy of solvation -66.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds