Wall clock time and date at job start Mon Mar 30 2020 00:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47212 * 180.02562 * 4 3 2 6 6 O 1.21279 * 120.00251 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00115 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00376 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47473 * 179.97438 * 8 7 5 10 10 H 1.09004 * 110.88407 * 51.11673 * 9 8 7 11 11 C 1.54910 * 111.00305 * 287.20042 * 9 8 7 12 12 N 1.47434 * 104.82980 * 204.91466 * 11 9 8 13 13 C 1.36937 * 125.64687 * 204.07832 * 12 11 9 14 14 H 1.07999 * 119.99821 * 0.03258 * 13 12 11 15 15 C 1.38808 * 119.99717 * 180.02562 * 13 12 11 16 16 N 1.31618 * 120.00336 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99914 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46848 * 90.00201 * 17 15 13 19 19 H 1.48493 * 109.47264 * 210.00502 * 17 15 13 20 20 H 1.48503 * 109.46993 * 330.00745 * 17 15 13 21 21 C 1.47024 * 108.70360 * 24.12512 * 12 11 9 22 22 C 1.54323 * 107.27027 * 358.94362 * 21 12 11 23 23 H 1.08997 * 110.72667 * 96.16680 * 22 21 12 24 24 C 1.52996 * 110.87013 * 219.37157 * 22 21 12 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.09002 * 109.47153 * 300.00216 * 4 3 2 33 33 H 1.09001 * 109.47289 * 60.00300 * 4 3 2 34 34 H 0.97004 * 120.00228 * 359.97438 * 7 5 4 35 35 H 1.09002 * 109.47129 * 300.00253 * 8 7 5 36 36 H 1.09001 * 109.46596 * 59.99898 * 8 7 5 37 37 H 1.08995 * 110.36789 * 323.74730 * 11 9 8 38 38 H 1.09000 * 110.37142 * 86.07943 * 11 9 8 39 39 H 0.96997 * 120.00066 * 179.97438 * 16 15 13 40 40 H 1.08993 * 109.88499 * 239.52409 * 21 12 11 41 41 H 1.08999 * 109.87827 * 118.35448 * 21 12 11 42 42 H 1.08998 * 109.47157 * 173.61038 * 24 22 21 43 43 H 1.08995 * 109.47107 * 293.60687 * 24 22 21 44 44 H 1.09000 * 109.47086 * 53.61035 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8632 0.0013 6 8 3.2843 3.7851 0.0008 7 7 5.3974 3.1095 0.0014 8 6 5.8859 4.4907 0.0014 9 6 7.4158 4.4907 0.0022 10 1 7.8048 3.8513 -0.7903 11 6 7.9704 4.0632 1.3841 12 7 9.3123 4.6696 1.4562 13 6 10.3487 4.2241 2.2324 14 1 10.2176 3.3565 2.8621 15 6 11.5677 4.8876 2.2098 16 7 11.7274 5.9451 1.4427 17 14 12.9818 4.2795 3.2682 18 1 13.7858 3.2941 2.5015 19 1 13.8415 5.4275 3.6530 20 1 12.4422 3.6332 4.4916 21 6 9.3531 5.8325 0.5574 22 6 7.9721 5.9336 -0.1239 23 1 7.3324 6.6409 0.4038 24 6 8.1175 6.3311 -1.5942 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.9330 0.9287 0.8908 33 1 3.9338 0.9285 -0.8891 34 1 6.0278 2.3722 0.0014 35 1 5.5226 5.0046 -0.8886 36 1 5.5224 5.0044 0.8914 37 1 7.3367 4.4485 2.1828 38 1 8.0411 2.9772 1.4451 39 1 12.5791 6.4089 1.4273 40 1 10.1285 5.6921 -0.1955 41 1 9.5503 6.7378 1.1315 42 1 7.1433 6.2855 -2.0809 43 1 8.5090 7.3462 -1.6591 44 1 8.8039 5.6446 -2.0900 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101734779.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:55 Heat of formation + Delta-G solvation = -46.261723 kcal Electronic energy + Delta-G solvation = -20578.571218 eV Core-core repulsion = 17530.268663 eV Total energy + Delta-G solvation = -3048.302555 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.73953 -38.02890 -35.59638 -34.57496 -32.93755 -30.93380 -30.72323 -29.09102 -26.08918 -25.42018 -24.31634 -22.64372 -21.32077 -20.42688 -19.97636 -19.14292 -17.06520 -16.60688 -16.18522 -15.92941 -15.07560 -14.76505 -14.25788 -13.98509 -13.82197 -13.59963 -13.46885 -12.93444 -12.75104 -12.51650 -12.51437 -11.81906 -11.69975 -11.49704 -11.41096 -11.38590 -11.22182 -11.19443 -10.82230 -10.78935 -10.77420 -10.17668 -10.00798 -9.97940 -9.89318 -9.65359 -9.50070 -8.91084 -8.60815 -6.83433 -5.71645 -3.05235 2.71644 3.28756 3.39036 3.44074 3.46183 4.48523 4.62098 4.66954 4.72808 5.02091 5.09219 5.14046 5.22418 5.29046 5.33626 5.47781 5.53201 5.56560 5.59911 5.61879 5.70619 5.77446 5.88276 5.90613 6.03121 6.04773 6.12593 6.17003 6.19164 6.29686 6.48532 6.50290 6.57639 6.63074 6.77248 6.95075 7.56254 7.60013 7.64503 7.83489 8.25740 8.30653 9.21712 9.82078 10.48388 11.39950 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027333 B = 0.003389 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.169543 B = 8258.823899 C = 9097.536141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.104 4.104 4 C -0.142 4.142 5 C 0.508 3.492 6 O -0.548 6.548 7 N -0.726 5.726 8 C 0.132 3.868 9 C -0.112 4.112 10 H 0.080 0.920 11 C 0.142 3.858 12 N -0.607 5.607 13 C -0.228 4.228 14 H 0.077 0.923 15 C -0.009 4.009 16 N -0.921 5.921 17 Si 0.912 3.088 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.184 3.816 22 C -0.111 4.111 23 H 0.067 0.933 24 C -0.134 4.134 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.401 0.599 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.019 0.981 38 H 0.035 0.965 39 H 0.252 0.748 40 H 0.049 0.951 41 H 0.041 0.959 42 H 0.044 0.956 43 H 0.053 0.947 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.954 -8.994 -5.518 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.142 4.142 4 C -0.182 4.182 5 C 0.295 3.705 6 O -0.426 6.426 7 N -0.378 5.378 8 C 0.008 3.992 9 C -0.132 4.132 10 H 0.098 0.902 11 C 0.016 3.984 12 N -0.333 5.333 13 C -0.357 4.357 14 H 0.095 0.905 15 C -0.205 4.205 16 N -0.569 5.569 17 Si 0.742 3.258 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.059 3.941 22 C -0.131 4.131 23 H 0.085 0.915 24 C -0.191 4.191 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.235 0.765 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.036 0.964 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.277 -8.245 -5.458 19.045 hybrid contribution 1.240 -0.603 0.581 1.496 sum -15.037 -8.849 -4.877 18.116 Atomic orbital electron populations 1.21762 0.95800 1.01434 1.02009 1.21554 0.96060 0.96724 1.01984 1.21363 0.92866 0.96435 1.03576 1.21710 0.98029 0.94123 1.04361 1.20727 0.82269 0.91648 0.75883 1.90687 1.55400 1.46654 1.49845 1.46138 1.06982 1.09626 1.75017 1.21382 0.93850 0.82077 1.01877 1.22671 0.92010 0.98757 0.99782 0.90211 1.21581 0.87868 0.96130 0.92849 1.44476 1.07703 1.31137 1.49985 1.19049 0.89438 1.09588 1.17600 0.90511 1.24806 0.97851 0.97856 0.99991 1.69962 1.24164 1.20889 1.41892 0.86123 0.82320 0.77557 0.79787 1.21628 1.21673 1.20722 1.21218 0.90010 0.90540 0.92333 1.22439 1.00017 0.94314 0.96308 0.91468 1.21686 1.00418 1.01364 0.95676 0.92706 0.92660 0.92861 0.91963 0.92026 0.91299 0.91238 0.88917 0.89038 0.76451 0.91777 0.91524 0.96378 0.94649 0.93758 0.93310 0.94052 0.93681 0.92770 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.13 -0.91 5.93 -26.74 -0.16 -1.07 16 3 C -0.10 -0.97 4.50 -26.74 -0.12 -1.09 16 4 C -0.14 -1.28 5.70 -27.88 -0.16 -1.44 16 5 C 0.51 6.63 7.83 -10.98 -0.09 6.54 16 6 O -0.55 -9.31 15.98 5.56 0.09 -9.22 16 7 N -0.73 -9.11 5.50 -60.29 -0.33 -9.44 16 8 C 0.13 1.93 5.13 -4.04 -0.02 1.91 16 9 C -0.11 -1.86 2.49 -88.47 -0.22 -2.08 16 10 H 0.08 1.30 8.05 -51.93 -0.42 0.88 16 11 C 0.14 2.84 6.65 -2.52 -0.02 2.82 16 12 N -0.61 -15.35 3.39 -170.07 -0.58 -15.93 16 13 C -0.23 -6.34 10.28 -15.06 -0.15 -6.49 16 14 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 15 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 16 N -0.92 -27.02 10.31 55.49 0.57 -26.45 16 17 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.18 4.40 4.97 -3.06 -0.02 4.39 16 22 C -0.11 -2.02 3.01 -88.79 -0.27 -2.29 16 23 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 24 C -0.13 -2.09 9.17 37.16 0.34 -1.75 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.40 4.21 8.47 -40.82 -0.35 3.86 16 35 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 36 H 0.07 1.07 7.96 -51.93 -0.41 0.65 16 37 H 0.02 0.38 7.90 -51.93 -0.41 -0.03 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.05 1.29 7.02 -51.93 -0.36 0.92 16 41 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 42 H 0.04 0.61 8.09 -51.93 -0.42 0.19 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 LS Contribution 351.94 15.07 5.30 5.30 Total: -1.00 -31.99 351.94 -8.78 -40.77 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -8.21 Total: -0.47 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -0.61 Total: -1.58 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.34 Total: -51.82 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.99 -8.78 -40.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101734779.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.490 kcal (2) G-P(sol) polarization free energy of solvation -31.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds