Wall clock time and date at job start Mon Mar 30 2020 00:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47212 * 180.02562 * 4 3 2 6 6 O 1.21279 * 120.00251 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00115 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00376 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47473 * 179.97438 * 8 7 5 10 10 H 1.09004 * 110.88407 * 51.11673 * 9 8 7 11 11 C 1.54910 * 111.00305 * 287.20042 * 9 8 7 12 12 N 1.47434 * 104.82980 * 204.91466 * 11 9 8 13 13 C 1.36937 * 125.64687 * 204.07832 * 12 11 9 14 14 H 1.07999 * 119.99821 * 0.03258 * 13 12 11 15 15 C 1.38808 * 119.99717 * 180.02562 * 13 12 11 16 16 N 1.31618 * 120.00336 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99914 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46848 * 90.00201 * 17 15 13 19 19 H 1.48493 * 109.47264 * 210.00502 * 17 15 13 20 20 H 1.48503 * 109.46993 * 330.00745 * 17 15 13 21 21 C 1.47024 * 108.70360 * 24.12512 * 12 11 9 22 22 C 1.54323 * 107.27027 * 358.94362 * 21 12 11 23 23 H 1.08997 * 110.72667 * 96.16680 * 22 21 12 24 24 C 1.52996 * 110.87013 * 219.37157 * 22 21 12 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.09002 * 109.47153 * 300.00216 * 4 3 2 33 33 H 1.09001 * 109.47289 * 60.00300 * 4 3 2 34 34 H 0.97004 * 120.00228 * 359.97438 * 7 5 4 35 35 H 1.09002 * 109.47129 * 300.00253 * 8 7 5 36 36 H 1.09001 * 109.46596 * 59.99898 * 8 7 5 37 37 H 1.08995 * 110.36789 * 323.74730 * 11 9 8 38 38 H 1.09000 * 110.37142 * 86.07943 * 11 9 8 39 39 H 0.96997 * 120.00066 * 179.97438 * 16 15 13 40 40 H 1.08993 * 109.88499 * 239.52409 * 21 12 11 41 41 H 1.08999 * 109.87827 * 118.35448 * 21 12 11 42 42 H 1.08998 * 109.47157 * 173.61038 * 24 22 21 43 43 H 1.08995 * 109.47107 * 293.60687 * 24 22 21 44 44 H 1.09000 * 109.47086 * 53.61035 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8632 0.0013 6 8 3.2843 3.7851 0.0008 7 7 5.3974 3.1095 0.0014 8 6 5.8859 4.4907 0.0014 9 6 7.4158 4.4907 0.0022 10 1 7.8048 3.8513 -0.7903 11 6 7.9704 4.0632 1.3841 12 7 9.3123 4.6696 1.4562 13 6 10.3487 4.2241 2.2324 14 1 10.2176 3.3565 2.8621 15 6 11.5677 4.8876 2.2098 16 7 11.7274 5.9451 1.4427 17 14 12.9818 4.2795 3.2682 18 1 13.7858 3.2941 2.5015 19 1 13.8415 5.4275 3.6530 20 1 12.4422 3.6332 4.4916 21 6 9.3531 5.8325 0.5574 22 6 7.9721 5.9336 -0.1239 23 1 7.3324 6.6409 0.4038 24 6 8.1175 6.3311 -1.5942 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.9330 0.9287 0.8908 33 1 3.9338 0.9285 -0.8891 34 1 6.0278 2.3722 0.0014 35 1 5.5226 5.0046 -0.8886 36 1 5.5224 5.0044 0.8914 37 1 7.3367 4.4485 2.1828 38 1 8.0411 2.9772 1.4451 39 1 12.5791 6.4089 1.4273 40 1 10.1285 5.6921 -0.1955 41 1 9.5503 6.7378 1.1315 42 1 7.1433 6.2855 -2.0809 43 1 8.5090 7.3462 -1.6591 44 1 8.8039 5.6446 -2.0900 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101734779.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:54 Heat of formation + Delta-G solvation = -66.256699 kcal Electronic energy + Delta-G solvation = -20579.438265 eV Core-core repulsion = 17530.268663 eV Total energy + Delta-G solvation = -3049.169602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.84548 -39.57794 -36.37771 -35.87476 -34.65073 -32.54853 -31.79061 -30.40427 -27.86712 -26.81275 -25.43239 -24.12170 -22.08258 -21.60281 -21.49438 -20.57401 -18.86064 -17.86775 -17.25628 -16.93747 -16.61634 -16.05224 -15.67003 -15.57189 -14.78654 -14.72719 -14.55275 -14.36278 -14.15111 -13.73505 -13.44283 -13.20828 -13.18683 -13.10003 -12.83915 -12.69031 -12.40995 -12.15467 -12.05855 -11.93541 -11.83826 -11.82906 -11.56644 -11.41581 -11.40903 -11.36233 -10.76429 -10.69261 -10.02748 -8.89419 -7.84430 -5.20196 1.45800 1.47753 1.56328 1.71685 2.28456 2.49544 3.33517 3.61859 3.71760 3.89106 3.94137 3.96129 3.99717 4.10472 4.37018 4.41563 4.49465 4.51707 4.60468 4.69250 4.73441 4.78818 4.85279 4.87283 4.97283 4.98403 5.04397 5.09073 5.14646 5.16724 5.31253 5.34473 5.41007 5.42530 5.47422 5.51112 5.56044 5.71478 5.81687 6.20526 6.62585 7.10749 7.31945 7.78501 8.43195 9.25867 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027333 B = 0.003389 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.169543 B = 8258.823899 C = 9097.536141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.103 4.103 4 C -0.134 4.134 5 C 0.505 3.495 6 O -0.592 6.592 7 N -0.720 5.720 8 C 0.144 3.856 9 C -0.089 4.089 10 H 0.090 0.910 11 C 0.138 3.862 12 N -0.630 5.630 13 C -0.241 4.241 14 H 0.084 0.916 15 C -0.069 4.069 16 N -0.952 5.952 17 Si 0.979 3.021 18 H -0.284 1.284 19 H -0.297 1.297 20 H -0.269 1.269 21 C 0.192 3.808 22 C -0.103 4.103 23 H 0.071 0.929 24 C -0.127 4.127 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.414 0.586 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.015 0.985 38 H 0.050 0.950 39 H 0.246 0.754 40 H 0.017 0.983 41 H -0.002 1.002 42 H 0.074 0.926 43 H 0.053 0.947 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.913 -11.177 -5.983 21.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.141 4.141 4 C -0.174 4.174 5 C 0.294 3.706 6 O -0.473 6.473 7 N -0.371 5.371 8 C 0.019 3.981 9 C -0.109 4.109 10 H 0.109 0.891 11 C 0.013 3.987 12 N -0.356 5.356 13 C -0.370 4.370 14 H 0.102 0.898 15 C -0.262 4.262 16 N -0.601 5.601 17 Si 0.807 3.193 18 H -0.211 1.211 19 H -0.223 1.223 20 H -0.194 1.194 21 C 0.067 3.933 22 C -0.123 4.123 23 H 0.090 0.910 24 C -0.184 4.184 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.250 0.750 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.035 0.965 41 H 0.016 0.984 42 H 0.093 0.907 43 H 0.072 0.928 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.255 -10.476 -5.921 21.037 hybrid contribution 1.499 0.079 0.760 1.682 sum -15.756 -10.398 -5.161 19.571 Atomic orbital electron populations 1.21789 0.95856 1.02034 1.01608 1.21526 0.96032 0.95258 1.02989 1.21333 0.93273 0.97547 1.01975 1.21756 0.97522 0.91488 1.06594 1.21452 0.81760 0.92906 0.74516 1.90674 1.56414 1.48363 1.51840 1.46053 1.07359 1.09093 1.74642 1.21099 0.91945 0.83442 1.01581 1.22462 0.93235 0.97323 0.97839 0.89125 1.21763 0.85515 0.96711 0.94742 1.44814 1.09163 1.31825 1.49798 1.19472 0.90324 1.09571 1.17675 0.89845 1.25673 1.00516 0.98313 1.01649 1.70195 1.24254 1.22147 1.43501 0.85075 0.78981 0.76755 0.78503 1.21068 1.22330 1.19376 1.20974 0.92650 0.88588 0.91104 1.22320 0.96490 0.95854 0.97592 0.91028 1.21630 1.02002 1.01167 0.93624 0.93040 0.93230 0.91736 0.91076 0.90799 0.92768 0.93128 0.86826 0.86355 0.74954 0.91102 0.92916 0.96718 0.93127 0.94480 0.96479 0.98351 0.90667 0.92788 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.91 71.98 0.71 -1.20 16 2 C -0.12 -1.45 5.93 30.59 0.18 -1.27 16 3 C -0.10 -1.75 4.50 30.59 0.14 -1.61 16 4 C -0.13 -2.01 5.70 29.85 0.17 -1.84 16 5 C 0.51 12.11 7.83 87.66 0.69 12.79 16 6 O -0.59 -19.57 15.98 -3.03 -0.05 -19.61 16 7 N -0.72 -16.13 5.50 -463.06 -2.55 -18.68 16 8 C 0.14 3.90 5.13 86.38 0.44 4.34 16 9 C -0.09 -2.78 2.49 -9.40 -0.02 -2.81 16 10 H 0.09 2.70 8.05 -2.39 -0.02 2.68 16 11 C 0.14 5.36 6.65 86.85 0.58 5.94 16 12 N -0.63 -32.18 3.39 -691.98 -2.35 -34.53 16 13 C -0.24 -13.49 10.28 84.03 0.86 -12.63 16 14 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 15 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 16 N -0.95 -57.71 10.31 21.65 0.22 -57.49 16 17 Si 0.98 45.75 29.55 68.60 2.03 47.78 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 C 0.19 9.48 4.97 86.73 0.43 9.91 16 22 C -0.10 -3.68 3.01 -9.61 -0.03 -3.71 16 23 H 0.07 2.51 8.04 -2.39 -0.02 2.49 16 24 C -0.13 -3.77 9.17 71.98 0.66 -3.11 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 31 H 0.05 1.03 8.10 -2.39 -0.02 1.02 16 32 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.41 7.27 8.47 -92.71 -0.79 6.48 16 35 H 0.07 1.89 8.09 -2.39 -0.02 1.87 16 36 H 0.05 1.61 7.96 -2.39 -0.02 1.59 16 37 H 0.02 0.60 7.90 -2.39 -0.02 0.58 16 38 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 40 H 0.02 0.94 7.02 -2.39 -0.02 0.92 16 41 H 0.00 -0.10 7.50 -2.39 -0.02 -0.12 16 42 H 0.07 1.81 8.09 -2.39 -0.02 1.79 16 43 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.05 1.53 8.07 -2.39 -0.02 1.51 16 Total: -1.00 -71.50 351.94 2.74 -68.76 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.16 Total: 12.41 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 5.28 Total: 1.37 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -4.67 Total: -110.70 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.05 Total: -19.61 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -71.50 2.74 -68.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101734779.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.501 kcal (2) G-P(sol) polarization free energy of solvation -71.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds