Wall clock time and date at job start Mon Mar 30 2020 00:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47390 * 2 1 4 4 C 1.53006 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.43054 * 52.45946 * 4 3 2 6 6 C 1.54265 * 110.59698 * 289.83923 * 4 3 2 7 7 C 1.53873 * 106.59570 * 217.65539 * 6 4 3 8 8 C 1.54263 * 106.60043 * 0.02562 * 7 6 4 9 9 C 1.54885 * 104.19719 * 23.60981 * 8 7 6 10 10 H 1.08997 * 110.91275 * 80.43985 * 9 8 7 11 11 C 1.50701 * 110.75904 * 203.74205 * 9 8 7 12 12 O 1.21280 * 119.99781 * 113.32543 * 11 9 8 13 13 N 1.34771 * 119.99622 * 293.33219 * 11 9 8 14 14 C 1.46505 * 119.99622 * 179.97438 * 13 11 9 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 N 1.46500 * 109.47473 * 179.97438 * 15 14 13 17 17 C 1.36939 * 120.00037 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00126 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99653 * 179.97438 * 17 16 15 20 20 N 1.31613 * 119.99744 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00081 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47117 * 89.99642 * 21 19 17 23 23 H 1.48500 * 109.47001 * 209.99705 * 21 19 17 24 24 H 1.48501 * 109.47010 * 329.99571 * 21 19 17 25 25 H 1.09006 * 109.47347 * 300.00466 * 1 2 3 26 26 H 1.09005 * 109.46938 * 59.99475 * 1 2 3 27 27 H 1.08995 * 109.47408 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47167 * 239.99692 * 2 1 3 29 29 H 1.09003 * 109.47189 * 119.99606 * 2 1 3 30 30 H 1.08997 * 109.47217 * 59.99722 * 3 2 1 31 31 H 1.09005 * 109.47321 * 299.99657 * 3 2 1 32 32 H 1.08993 * 110.03373 * 336.94088 * 6 4 3 33 33 H 1.08998 * 110.02856 * 98.32361 * 6 4 3 34 34 H 1.08995 * 110.03325 * 119.28968 * 7 6 4 35 35 H 1.09002 * 110.02814 * 240.66447 * 7 6 4 36 36 H 1.09006 * 110.48477 * 264.92860 * 8 7 6 37 37 H 1.09004 * 110.48305 * 142.29191 * 8 7 6 38 38 H 0.96996 * 120.00772 * 359.97438 * 13 11 9 39 39 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 40 40 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 41 41 H 1.09002 * 109.47153 * 300.00008 * 15 14 13 42 42 H 1.08998 * 109.47533 * 59.99637 * 15 14 13 43 43 H 0.97004 * 119.99396 * 0.02562 * 16 15 14 44 44 H 0.97001 * 120.00351 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9509 0.8199 -0.8090 6 6 4.1121 0.9525 1.3593 7 6 5.3595 1.7997 1.6661 8 6 5.5314 2.7753 0.4835 9 6 4.1117 2.8883 -0.1252 10 1 3.4970 3.5827 0.4476 11 6 4.1822 3.3081 -1.5709 12 8 3.8362 2.5395 -2.4430 13 7 4.6299 4.5373 -1.8945 14 6 4.6990 4.9452 -3.2999 15 6 5.2365 6.3748 -3.3903 16 7 5.3062 6.7825 -4.7957 17 6 5.7602 8.0318 -5.1245 18 1 6.0672 8.7165 -4.3479 19 6 5.8267 8.4179 -6.4563 20 7 6.2635 9.6185 -6.7723 21 14 5.2962 7.2333 -7.7997 22 1 3.8488 7.4155 -8.0771 23 1 6.0749 7.5046 -9.0347 24 1 5.5433 5.8381 -7.3552 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.3612 1.0988 2.1356 33 1 4.3822 -0.1015 1.2953 34 1 5.2139 2.3571 2.5913 35 1 6.2356 1.1569 1.7517 36 1 6.2291 2.3682 -0.2485 37 1 5.8732 3.7478 0.8379 38 1 4.9064 5.1521 -1.1970 39 1 5.3636 4.2719 -3.8414 40 1 3.7026 4.9036 -3.7398 41 1 4.5716 7.0478 -2.8489 42 1 6.2328 6.4169 -2.9503 43 1 5.0300 6.1675 -5.4933 44 1 6.3097 9.8884 -7.7029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130566380.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:18 Heat of formation + Delta-G solvation = -60.996309 kcal Electronic energy + Delta-G solvation = -20449.050557 eV Core-core repulsion = 17400.109063 eV Total energy + Delta-G solvation = -3048.941495 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.27184 -37.93330 -35.78610 -34.73154 -33.88363 -31.48998 -30.01546 -29.77835 -27.75850 -25.39788 -23.57684 -21.85930 -21.69111 -21.46720 -20.00673 -19.66844 -17.87112 -17.19683 -15.87724 -15.73567 -15.34913 -15.07365 -14.65777 -14.28798 -14.01830 -13.93881 -13.74688 -13.33144 -13.07971 -12.76291 -12.66746 -12.50400 -12.03763 -11.59904 -11.53967 -11.50607 -11.42709 -11.11716 -10.96414 -10.92299 -10.85512 -10.62877 -10.58580 -10.55167 -10.16965 -9.70174 -9.61449 -9.02231 -8.87448 -7.31357 -5.81076 -3.18426 2.70275 3.23442 3.37787 3.41549 3.45459 4.18658 4.32318 4.44767 4.56748 4.79553 4.84371 4.94813 5.04796 5.13205 5.19967 5.22957 5.32319 5.35629 5.39902 5.44239 5.45915 5.58158 5.61785 5.65565 5.65924 5.68243 5.69892 5.84402 5.87192 5.92390 5.96982 6.00841 6.08877 6.19989 6.28772 6.41526 6.58564 6.64416 7.59036 7.92524 8.30574 8.37135 9.14803 9.87170 10.05623 11.36813 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027065 B = 0.003283 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.292883 B = 8525.542636 C = 9239.126186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.111 4.111 4 C -0.072 4.072 5 H 0.087 0.913 6 C -0.120 4.120 7 C -0.123 4.123 8 C -0.114 4.114 9 C -0.112 4.112 10 H 0.101 0.899 11 C 0.517 3.483 12 O -0.541 6.541 13 N -0.723 5.723 14 C 0.107 3.893 15 C 0.149 3.851 16 N -0.753 5.753 17 C -0.249 4.249 18 H 0.091 0.909 19 C 0.007 3.993 20 N -0.932 5.932 21 Si 0.885 3.115 22 H -0.283 1.283 23 H -0.289 1.289 24 H -0.276 1.276 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.400 0.600 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.033 0.967 42 H 0.032 0.968 43 H 0.363 0.637 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.376 -18.611 19.902 27.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.148 4.148 4 C -0.091 4.091 5 H 0.106 0.894 6 C -0.158 4.158 7 C -0.161 4.161 8 C -0.152 4.152 9 C -0.134 4.134 10 H 0.119 0.881 11 C 0.303 3.697 12 O -0.418 6.418 13 N -0.375 5.375 14 C -0.017 4.017 15 C 0.021 3.979 16 N -0.399 5.399 17 C -0.378 4.378 18 H 0.109 0.891 19 C -0.189 4.189 20 N -0.579 5.579 21 Si 0.715 3.285 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.202 1.202 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.234 0.766 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.196 0.804 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.530 -18.920 19.272 27.785 hybrid contribution -0.176 -0.294 -0.777 0.849 sum -6.706 -19.214 18.495 27.499 Atomic orbital electron populations 1.21779 0.96124 1.01363 1.01769 1.21505 0.95593 0.96986 1.01905 1.21633 0.94268 0.96937 1.01984 1.21870 0.95352 0.94060 0.97800 0.89421 1.22240 0.97105 0.99580 0.96872 1.22110 0.98246 0.97692 0.98002 1.22328 0.94979 1.00203 0.97655 1.22386 0.98864 0.99124 0.92992 0.88101 1.20495 0.76743 0.81409 0.91022 1.90692 1.48227 1.52150 1.50689 1.45934 1.66502 1.15744 1.09273 1.21581 1.01782 0.97029 0.81297 1.20728 0.98192 0.90927 0.88054 1.42542 1.80355 1.15865 1.01156 1.19011 1.36118 0.89414 0.93298 0.89097 1.24674 1.00953 0.96456 0.96847 1.69697 1.52234 1.18440 1.17568 0.86541 0.78527 0.81015 0.82452 1.20904 1.21569 1.20179 0.92943 0.92698 0.92984 0.91950 0.92200 0.92250 0.91529 0.91600 0.91731 0.91613 0.91642 0.91027 0.90822 0.76575 0.91486 0.91474 0.94946 0.94992 0.80396 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.15 0.37 -0.82 16 2 C -0.12 -1.03 5.81 -26.74 -0.16 -1.18 16 3 C -0.11 -1.02 4.60 -26.73 -0.12 -1.15 16 4 C -0.07 -0.68 1.93 -88.94 -0.17 -0.85 16 5 H 0.09 1.03 7.44 -51.93 -0.39 0.64 16 6 C -0.12 -0.88 5.70 -25.61 -0.15 -1.03 16 7 C -0.12 -0.85 6.80 -25.62 -0.17 -1.02 16 8 C -0.11 -0.92 6.26 -25.08 -0.16 -1.08 16 9 C -0.11 -1.07 2.71 -89.77 -0.24 -1.32 16 10 H 0.10 0.82 8.06 -51.93 -0.42 0.40 16 11 C 0.52 6.94 7.13 -10.99 -0.08 6.86 16 12 O -0.54 -9.37 15.72 5.56 0.09 -9.28 16 13 N -0.72 -9.35 5.56 -60.29 -0.33 -9.68 16 14 C 0.11 1.74 5.79 -4.04 -0.02 1.72 16 15 C 0.15 2.78 6.37 -4.04 -0.03 2.76 16 16 N -0.75 -18.03 5.41 -59.91 -0.32 -18.35 16 17 C -0.25 -7.06 10.47 -15.06 -0.16 -7.22 16 18 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 19 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 20 N -0.93 -29.29 13.97 55.49 0.78 -28.51 16 21 Si 0.88 22.30 27.74 -169.99 -4.71 17.59 16 22 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.28 -6.59 6.52 56.52 0.37 -6.23 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.44 7.63 -51.93 -0.40 0.05 16 30 H 0.06 0.48 7.96 -51.93 -0.41 0.07 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.44 7.72 -51.93 -0.40 0.03 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.67 8.04 -51.93 -0.42 0.25 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.40 4.07 8.47 -40.82 -0.35 3.73 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.36 8.57 5.53 -40.82 -0.23 8.35 16 44 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 351.18 15.07 5.29 5.29 Total: -1.00 -32.94 351.18 -8.49 -41.44 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -8.09 Total: 5.74 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -1.18 Total: -4.23 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.12 Total: -56.55 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.94 -8.49 -41.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130566380.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.558 kcal (2) G-P(sol) polarization free energy of solvation -32.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds