Wall clock time and date at job start Mon Mar 30 2020 00:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47390 * 2 1 4 4 C 1.53006 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.43054 * 52.45946 * 4 3 2 6 6 C 1.54265 * 110.59698 * 289.83923 * 4 3 2 7 7 C 1.53873 * 106.59570 * 217.65539 * 6 4 3 8 8 C 1.54263 * 106.60043 * 0.02562 * 7 6 4 9 9 C 1.54885 * 104.19719 * 23.60981 * 8 7 6 10 10 H 1.08997 * 110.91275 * 80.43985 * 9 8 7 11 11 C 1.50701 * 110.75904 * 203.74205 * 9 8 7 12 12 O 1.21280 * 119.99781 * 113.32543 * 11 9 8 13 13 N 1.34771 * 119.99622 * 293.33219 * 11 9 8 14 14 C 1.46505 * 119.99622 * 179.97438 * 13 11 9 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 N 1.46500 * 109.47473 * 179.97438 * 15 14 13 17 17 C 1.36939 * 120.00037 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00126 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99653 * 179.97438 * 17 16 15 20 20 N 1.31613 * 119.99744 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00081 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47117 * 89.99642 * 21 19 17 23 23 H 1.48500 * 109.47001 * 209.99705 * 21 19 17 24 24 H 1.48501 * 109.47010 * 329.99571 * 21 19 17 25 25 H 1.09006 * 109.47347 * 300.00466 * 1 2 3 26 26 H 1.09005 * 109.46938 * 59.99475 * 1 2 3 27 27 H 1.08995 * 109.47408 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47167 * 239.99692 * 2 1 3 29 29 H 1.09003 * 109.47189 * 119.99606 * 2 1 3 30 30 H 1.08997 * 109.47217 * 59.99722 * 3 2 1 31 31 H 1.09005 * 109.47321 * 299.99657 * 3 2 1 32 32 H 1.08993 * 110.03373 * 336.94088 * 6 4 3 33 33 H 1.08998 * 110.02856 * 98.32361 * 6 4 3 34 34 H 1.08995 * 110.03325 * 119.28968 * 7 6 4 35 35 H 1.09002 * 110.02814 * 240.66447 * 7 6 4 36 36 H 1.09006 * 110.48477 * 264.92860 * 8 7 6 37 37 H 1.09004 * 110.48305 * 142.29191 * 8 7 6 38 38 H 0.96996 * 120.00772 * 359.97438 * 13 11 9 39 39 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 40 40 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 41 41 H 1.09002 * 109.47153 * 300.00008 * 15 14 13 42 42 H 1.08998 * 109.47533 * 59.99637 * 15 14 13 43 43 H 0.97004 * 119.99396 * 0.02562 * 16 15 14 44 44 H 0.97001 * 120.00351 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9509 0.8199 -0.8090 6 6 4.1121 0.9525 1.3593 7 6 5.3595 1.7997 1.6661 8 6 5.5314 2.7753 0.4835 9 6 4.1117 2.8883 -0.1252 10 1 3.4970 3.5827 0.4476 11 6 4.1822 3.3081 -1.5709 12 8 3.8362 2.5395 -2.4430 13 7 4.6299 4.5373 -1.8945 14 6 4.6990 4.9452 -3.2999 15 6 5.2365 6.3748 -3.3903 16 7 5.3062 6.7825 -4.7957 17 6 5.7602 8.0318 -5.1245 18 1 6.0672 8.7165 -4.3479 19 6 5.8267 8.4179 -6.4563 20 7 6.2635 9.6185 -6.7723 21 14 5.2962 7.2333 -7.7997 22 1 3.8488 7.4155 -8.0771 23 1 6.0749 7.5046 -9.0347 24 1 5.5433 5.8381 -7.3552 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.3612 1.0988 2.1356 33 1 4.3822 -0.1015 1.2953 34 1 5.2139 2.3571 2.5913 35 1 6.2356 1.1569 1.7517 36 1 6.2291 2.3682 -0.2485 37 1 5.8732 3.7478 0.8379 38 1 4.9064 5.1521 -1.1970 39 1 5.3636 4.2719 -3.8414 40 1 3.7026 4.9036 -3.7398 41 1 4.5716 7.0478 -2.8489 42 1 6.2328 6.4169 -2.9503 43 1 5.0300 6.1675 -5.4933 44 1 6.3097 9.8884 -7.7029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130566380.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:17 Heat of formation + Delta-G solvation = -82.712765 kcal Electronic energy + Delta-G solvation = -20449.992254 eV Core-core repulsion = 17400.109063 eV Total energy + Delta-G solvation = -3049.883191 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.25005 -38.82775 -37.37859 -35.61205 -35.27321 -33.47643 -30.93348 -30.59140 -29.12284 -26.11838 -25.29424 -23.26061 -22.67732 -22.40981 -20.82993 -20.50074 -19.82401 -18.29220 -17.14785 -16.71445 -16.42777 -16.28508 -15.83836 -15.66656 -15.37593 -15.16732 -14.70441 -14.66253 -14.24812 -13.77466 -13.50471 -13.42268 -13.26484 -13.20672 -12.79233 -12.63941 -12.61388 -12.21516 -12.10175 -12.01169 -11.84551 -11.76785 -11.61700 -11.28580 -11.25873 -11.21666 -11.05225 -10.78691 -10.13690 -9.38265 -8.06827 -5.42199 1.37822 1.39394 1.46653 1.63894 2.12817 2.45223 3.24942 3.45707 3.61906 3.67966 3.81177 3.94577 4.12745 4.17005 4.20168 4.24331 4.39792 4.49900 4.53331 4.55089 4.58518 4.65691 4.77465 4.79446 4.97011 4.99182 4.99929 5.05125 5.07818 5.12360 5.23201 5.26176 5.29614 5.35668 5.40259 5.47854 5.51867 5.59525 5.70879 6.16276 6.55969 7.01465 7.25523 7.76064 7.93670 9.14001 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027065 B = 0.003283 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.292883 B = 8525.542636 C = 9239.126186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.107 4.107 4 C -0.073 4.073 5 H 0.058 0.942 6 C -0.115 4.115 7 C -0.119 4.119 8 C -0.112 4.112 9 C -0.106 4.106 10 H 0.124 0.876 11 C 0.515 3.485 12 O -0.584 6.584 13 N -0.713 5.713 14 C 0.122 3.878 15 C 0.151 3.849 16 N -0.760 5.760 17 C -0.238 4.238 18 H 0.064 0.936 19 C -0.059 4.059 20 N -0.980 5.980 21 Si 0.952 3.048 22 H -0.277 1.277 23 H -0.293 1.293 24 H -0.256 1.256 25 H 0.062 0.938 26 H 0.042 0.958 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.416 0.584 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.366 0.634 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.892 -20.038 21.998 30.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.145 4.145 4 C -0.092 4.092 5 H 0.076 0.924 6 C -0.152 4.152 7 C -0.157 4.157 8 C -0.150 4.150 9 C -0.127 4.127 10 H 0.142 0.858 11 C 0.303 3.697 12 O -0.464 6.464 13 N -0.366 5.366 14 C -0.003 4.003 15 C 0.025 3.975 16 N -0.406 5.406 17 C -0.369 4.369 18 H 0.082 0.918 19 C -0.251 4.251 20 N -0.630 5.630 21 Si 0.779 3.221 22 H -0.203 1.203 23 H -0.219 1.219 24 H -0.180 1.180 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.253 0.747 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.199 0.801 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.046 -20.368 21.435 30.397 hybrid contribution -0.006 0.166 -1.339 1.349 sum -7.052 -20.203 20.096 29.355 Atomic orbital electron populations 1.21778 0.95601 1.01901 1.01700 1.21494 0.96058 0.96477 1.01836 1.21603 0.94175 0.97316 1.01396 1.21843 0.95451 0.93655 0.98286 0.92393 1.22211 0.97665 0.99769 0.95584 1.22113 0.98098 0.97461 0.97993 1.22357 0.93375 1.01570 0.97695 1.22453 1.00494 0.99513 0.90265 0.85788 1.21239 0.75395 0.80694 0.92408 1.90677 1.50059 1.53332 1.52333 1.45796 1.66332 1.16157 1.08268 1.21195 1.00719 0.95154 0.83203 1.20828 0.98914 0.92405 0.85400 1.42575 1.80078 1.14441 1.03508 1.19015 1.34634 0.90527 0.92715 0.91780 1.25478 1.01911 0.98265 0.99470 1.69861 1.54412 1.20697 1.17988 0.85456 0.78033 0.79656 0.78950 1.20330 1.21909 1.18030 0.91877 0.93879 0.92185 0.93600 0.90660 0.90457 0.94312 0.90112 0.91532 0.89837 0.91238 0.92702 0.88965 0.74686 0.92563 0.92413 0.94026 0.94120 0.80104 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 71.98 0.71 -1.49 16 2 C -0.12 -1.93 5.81 30.59 0.18 -1.75 16 3 C -0.11 -1.87 4.60 30.60 0.14 -1.73 16 4 C -0.07 -1.30 1.93 -9.71 -0.02 -1.32 16 5 H 0.06 1.38 7.44 -2.39 -0.02 1.37 16 6 C -0.11 -1.37 5.70 31.32 0.18 -1.20 16 7 C -0.12 -1.26 6.80 31.32 0.21 -1.05 16 8 C -0.11 -1.53 6.26 31.67 0.20 -1.33 16 9 C -0.11 -1.82 2.71 -10.24 -0.03 -1.85 16 10 H 0.12 1.61 8.06 -2.39 -0.02 1.59 16 11 C 0.51 13.37 7.13 87.66 0.62 13.99 16 12 O -0.58 -20.50 15.72 -3.03 -0.05 -20.54 16 13 N -0.71 -17.35 5.56 -463.06 -2.57 -19.93 16 14 C 0.12 3.85 5.79 86.38 0.50 4.35 16 15 C 0.15 5.45 6.37 86.38 0.55 6.00 16 16 N -0.76 -35.63 5.41 -343.46 -1.86 -37.49 16 17 C -0.24 -13.56 10.47 84.03 0.88 -12.67 16 18 H 0.06 3.92 8.06 -2.91 -0.02 3.90 16 19 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 20 N -0.98 -62.63 13.97 21.65 0.30 -62.33 16 21 Si 0.95 45.98 27.74 68.60 1.90 47.89 16 22 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 24 H -0.26 -11.35 6.52 99.48 0.65 -10.70 16 25 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 0.96 7.63 -2.39 -0.02 0.95 16 30 H 0.08 1.06 7.96 -2.39 -0.02 1.04 16 31 H 0.04 0.88 8.14 -2.38 -0.02 0.87 16 32 H 0.08 0.76 7.72 -2.39 -0.02 0.74 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.05 0.94 8.04 -2.38 -0.02 0.92 16 37 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.42 7.46 8.47 -92.71 -0.79 6.68 16 39 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.37 16.70 5.53 -92.71 -0.51 16.19 16 44 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -72.07 351.18 1.93 -70.14 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -0.39 Total: 25.36 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 4.60 Total: -3.10 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -4.13 Total: -119.75 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.05 Total: -20.54 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.90 Total: 47.89 kcal Total: -72.07 1.93 -70.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130566380.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.571 kcal (2) G-P(sol) polarization free energy of solvation -72.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds