Wall clock time and date at job start Mon Mar 30 2020 00:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47023 * 2 1 4 4 C 1.52999 * 109.47023 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47075 * 180.02562 * 4 3 2 6 6 O 1.21278 * 120.00406 * 0.02562 * 5 4 3 7 7 N 1.34779 * 120.00129 * 179.97438 * 5 4 3 8 8 C 1.46497 * 120.00346 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.49794 * 35.00034 * 8 7 5 10 10 C 1.53047 * 109.50082 * 155.06520 * 8 7 5 11 11 C 1.53107 * 109.49739 * 58.61804 * 10 8 7 12 12 C 1.53189 * 109.33115 * 61.34762 * 11 10 8 13 13 H 1.09007 * 109.58813 * 65.14608 * 12 11 10 14 14 C 1.52998 * 109.70432 * 185.50074 * 12 11 10 15 15 N 1.46926 * 108.77512 * 305.36048 * 12 11 10 16 16 C 1.36940 * 120.62939 * 233.58521 * 15 12 11 17 17 H 1.08001 * 119.99737 * 29.03946 * 16 15 12 18 18 C 1.38807 * 119.99973 * 209.03740 * 16 15 12 19 19 N 1.31622 * 120.00052 * 15.01578 * 18 16 15 20 20 Si 1.86801 * 119.99944 * 195.01053 * 18 16 15 21 21 H 1.48499 * 109.46971 * 90.00721 * 20 18 16 22 22 H 1.48501 * 109.46781 * 210.00158 * 20 18 16 23 23 H 1.48494 * 109.47130 * 330.00295 * 20 18 16 24 24 C 1.46921 * 118.73971 * 53.61025 * 15 12 11 25 25 H 1.08998 * 109.47436 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47197 * 299.99939 * 1 2 3 27 27 H 1.09000 * 109.47231 * 60.00086 * 1 2 3 28 28 H 1.09000 * 109.47231 * 119.99914 * 2 1 3 29 29 H 1.09001 * 109.47197 * 240.00061 * 2 1 3 30 30 H 1.09000 * 109.47047 * 300.00027 * 3 2 1 31 31 H 1.09001 * 109.47084 * 59.99992 * 3 2 1 32 32 H 1.09000 * 109.47231 * 299.99914 * 4 3 2 33 33 H 1.09001 * 109.47197 * 60.00061 * 4 3 2 34 34 H 0.97002 * 119.99597 * 0.02562 * 7 5 4 35 35 H 1.08997 * 109.45839 * 178.60952 * 10 8 7 36 36 H 1.08999 * 109.45874 * 298.56830 * 10 8 7 37 37 H 1.08993 * 109.49494 * 301.38603 * 11 10 8 38 38 H 1.08999 * 109.51146 * 181.31666 * 11 10 8 39 39 H 1.09005 * 109.47105 * 179.35793 * 14 12 11 40 40 H 1.09002 * 109.47314 * 299.35793 * 14 12 11 41 41 H 1.09004 * 109.46745 * 59.36076 * 14 12 11 42 42 H 0.96998 * 120.00079 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.59007 * 186.60973 * 24 15 12 44 44 H 1.08997 * 109.70838 * 66.24478 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0723 2.8633 0.0013 6 8 3.2842 3.7851 0.0017 7 7 5.3973 3.1096 0.0024 8 6 5.8857 4.4908 0.0025 9 1 5.2129 5.1145 0.5910 10 6 7.2888 4.5365 0.6120 11 6 8.2263 3.6346 -0.1953 12 6 8.3075 4.1479 -1.6364 13 1 8.7765 5.1319 -1.6479 14 6 9.1316 3.1770 -2.4842 15 7 6.9464 4.2448 -2.1812 16 6 6.6219 3.6302 -3.3612 17 1 7.1418 2.7332 -3.6636 18 6 5.6248 4.1602 -4.1684 19 7 5.1979 5.3887 -3.9662 20 14 4.8890 3.1298 -5.5419 21 1 3.7215 2.3735 -5.0222 22 1 4.4502 4.0193 -6.6472 23 1 5.9101 2.1779 -6.0481 24 6 5.9403 5.0139 -1.4364 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.9329 0.9288 0.8909 33 1 3.9337 0.9285 -0.8891 34 1 6.0277 2.3723 0.0025 35 1 7.6614 5.5606 0.5891 36 1 7.2480 4.1881 1.6440 37 1 7.8410 2.6150 -0.1935 38 1 9.2200 3.6487 0.2524 39 1 9.1773 3.5399 -3.5111 40 1 10.1408 3.1066 -2.0785 41 1 8.6637 2.1926 -2.4673 42 1 4.5014 5.7591 -4.5306 43 1 4.9647 4.8915 -1.9068 44 1 6.2138 6.0690 -1.4314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131856227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:20 Heat of formation + Delta-G solvation = -43.160426 kcal Electronic energy + Delta-G solvation = -22016.148851 eV Core-core repulsion = 18967.980779 eV Total energy + Delta-G solvation = -3048.168073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.43274 -37.62505 -35.18318 -33.99256 -32.69250 -31.08288 -29.97816 -29.64212 -26.24389 -25.05558 -24.25102 -22.14070 -21.20601 -20.47014 -19.96179 -18.66630 -16.68070 -16.18741 -15.72230 -15.38313 -14.80802 -14.25248 -13.95358 -13.85862 -13.63270 -13.41261 -13.18202 -12.92024 -12.53349 -12.39089 -12.16683 -11.83542 -11.21343 -11.16775 -11.14839 -11.07057 -10.94186 -10.89681 -10.77528 -10.69242 -10.44484 -10.36019 -10.29549 -9.93186 -9.50379 -9.42116 -9.12986 -8.41767 -8.25352 -6.57042 -5.71489 -3.15994 3.32566 3.39902 3.45492 3.47944 3.88303 4.52354 4.98510 5.04544 5.08289 5.33870 5.38394 5.39241 5.45986 5.51140 5.54268 5.63134 5.64872 5.81839 5.89762 5.97668 6.00825 6.04732 6.14365 6.17396 6.19825 6.35258 6.36977 6.40331 6.47079 6.53729 6.57022 6.63928 6.75091 6.96088 7.07284 7.16493 7.46812 7.75492 7.86636 8.23527 8.52634 8.94631 9.26879 9.91489 10.47624 11.36222 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013937 B = 0.007327 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.534941 B = 3820.331038 C = 4999.129099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.103 4.103 4 C -0.140 4.140 5 C 0.511 3.489 6 O -0.550 6.550 7 N -0.703 5.703 8 C 0.118 3.882 9 H 0.073 0.927 10 C -0.118 4.118 11 C -0.129 4.129 12 C 0.165 3.835 13 H 0.024 0.976 14 C -0.135 4.135 15 N -0.583 5.583 16 C -0.250 4.250 17 H 0.068 0.932 18 C 0.005 3.995 19 N -0.899 5.899 20 Si 0.896 3.104 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.280 1.280 24 C 0.162 3.838 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.394 0.606 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.036 0.964 41 H 0.051 0.949 42 H 0.253 0.747 43 H 0.097 0.903 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.298 -8.721 9.817 13.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.141 4.141 4 C -0.180 4.180 5 C 0.297 3.703 6 O -0.429 6.429 7 N -0.353 5.353 8 C 0.012 3.988 9 H 0.091 0.909 10 C -0.156 4.156 11 C -0.169 4.169 12 C 0.058 3.942 13 H 0.041 0.959 14 C -0.193 4.193 15 N -0.306 5.306 16 C -0.379 4.379 17 H 0.086 0.914 18 C -0.194 4.194 19 N -0.543 5.543 20 Si 0.727 3.273 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.206 1.206 24 C 0.035 3.965 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.228 0.772 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.115 0.885 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -0.370 -7.946 9.696 12.541 hybrid contribution -0.055 -0.780 -0.823 1.135 sum -0.425 -8.726 8.872 12.452 Atomic orbital electron populations 1.21758 0.95988 1.01167 1.01990 1.21552 0.95878 0.97052 1.01750 1.21340 0.93247 0.96035 1.03508 1.21660 0.97732 0.94891 1.03738 1.20489 0.82569 0.91208 0.76016 1.90660 1.55412 1.46484 1.50303 1.45875 1.06405 1.08950 1.74116 1.21737 0.93505 0.82812 1.00770 0.90894 1.21696 0.95429 1.00674 0.97828 1.22066 0.97802 0.98948 0.98080 1.20455 0.87441 0.95734 0.90536 0.95879 1.21793 0.97072 0.99662 1.00748 1.44046 1.03414 1.60599 1.22531 1.19090 1.18263 1.04387 0.96188 0.91447 1.25059 1.01483 0.95205 0.97633 1.69985 1.30972 1.12861 1.40527 0.86386 0.79433 0.79625 0.81901 1.21522 1.21832 1.20555 1.21181 0.96216 0.92301 0.86786 0.93061 0.92810 0.92627 0.92269 0.92020 0.91131 0.91527 0.89816 0.89083 0.77203 0.91283 0.93144 0.92674 0.92974 0.92060 0.94461 0.92995 0.93696 0.88464 0.95939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.16 0.37 -1.21 16 2 C -0.12 -1.40 5.93 -26.73 -0.16 -1.55 16 3 C -0.10 -1.46 4.50 -26.73 -0.12 -1.58 16 4 C -0.14 -2.01 5.70 -27.89 -0.16 -2.17 16 5 C 0.51 9.64 7.80 -10.99 -0.09 9.55 16 6 O -0.55 -12.58 15.64 5.56 0.09 -12.49 16 7 N -0.70 -12.62 4.92 -53.69 -0.26 -12.88 16 8 C 0.12 2.28 2.81 -67.81 -0.19 2.09 16 9 H 0.07 1.47 7.58 -51.93 -0.39 1.08 16 10 C -0.12 -1.89 5.59 -26.65 -0.15 -2.04 16 11 C -0.13 -2.07 5.21 -26.58 -0.14 -2.20 16 12 C 0.17 3.26 3.49 -67.60 -0.24 3.02 16 13 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 14 C -0.14 -2.44 7.95 37.16 0.30 -2.15 16 15 N -0.58 -13.89 2.91 -164.78 -0.48 -14.37 16 16 C -0.25 -6.58 8.60 -15.06 -0.13 -6.71 16 17 H 0.07 1.74 6.21 -52.49 -0.33 1.41 16 18 C 0.01 0.14 4.96 -17.43 -0.09 0.06 16 19 N -0.90 -26.65 11.14 55.49 0.62 -26.03 16 20 Si 0.90 22.03 29.58 -169.99 -5.03 17.00 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.16 3.91 4.89 -3.71 -0.02 3.89 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 31 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.39 6.24 6.77 -40.82 -0.28 5.97 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.86 6.40 -51.93 -0.33 0.52 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.22 7.62 -51.93 -0.40 0.82 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.94 7.44 -51.93 -0.39 0.55 16 42 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.10 2.78 6.06 -51.93 -0.31 2.46 16 44 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 341.29 15.07 5.14 5.14 Total: -1.00 -31.02 341.29 -8.63 -39.65 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -7.90 Total: 4.98 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -0.81 Total: -1.00 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.13 Total: -53.28 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.09 Total: -12.49 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.02 -8.63 -39.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131856227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.515 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds