Wall clock time and date at job start Mon Mar 30 2020 00:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47023 * 2 1 4 4 C 1.52999 * 109.47023 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47075 * 180.02562 * 4 3 2 6 6 O 1.21278 * 120.00406 * 0.02562 * 5 4 3 7 7 N 1.34779 * 120.00129 * 179.97438 * 5 4 3 8 8 C 1.46497 * 120.00346 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.49794 * 35.00034 * 8 7 5 10 10 C 1.53047 * 109.50082 * 155.06520 * 8 7 5 11 11 C 1.53107 * 109.49739 * 58.61804 * 10 8 7 12 12 C 1.53189 * 109.33115 * 61.34762 * 11 10 8 13 13 H 1.09007 * 109.58813 * 65.14608 * 12 11 10 14 14 C 1.52998 * 109.70432 * 185.50074 * 12 11 10 15 15 N 1.46926 * 108.77512 * 305.36048 * 12 11 10 16 16 C 1.36940 * 120.62939 * 233.58521 * 15 12 11 17 17 H 1.08001 * 119.99737 * 29.03946 * 16 15 12 18 18 C 1.38807 * 119.99973 * 209.03740 * 16 15 12 19 19 N 1.31622 * 120.00052 * 15.01578 * 18 16 15 20 20 Si 1.86801 * 119.99944 * 195.01053 * 18 16 15 21 21 H 1.48499 * 109.46971 * 90.00721 * 20 18 16 22 22 H 1.48501 * 109.46781 * 210.00158 * 20 18 16 23 23 H 1.48494 * 109.47130 * 330.00295 * 20 18 16 24 24 C 1.46921 * 118.73971 * 53.61025 * 15 12 11 25 25 H 1.08998 * 109.47436 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47197 * 299.99939 * 1 2 3 27 27 H 1.09000 * 109.47231 * 60.00086 * 1 2 3 28 28 H 1.09000 * 109.47231 * 119.99914 * 2 1 3 29 29 H 1.09001 * 109.47197 * 240.00061 * 2 1 3 30 30 H 1.09000 * 109.47047 * 300.00027 * 3 2 1 31 31 H 1.09001 * 109.47084 * 59.99992 * 3 2 1 32 32 H 1.09000 * 109.47231 * 299.99914 * 4 3 2 33 33 H 1.09001 * 109.47197 * 60.00061 * 4 3 2 34 34 H 0.97002 * 119.99597 * 0.02562 * 7 5 4 35 35 H 1.08997 * 109.45839 * 178.60952 * 10 8 7 36 36 H 1.08999 * 109.45874 * 298.56830 * 10 8 7 37 37 H 1.08993 * 109.49494 * 301.38603 * 11 10 8 38 38 H 1.08999 * 109.51146 * 181.31666 * 11 10 8 39 39 H 1.09005 * 109.47105 * 179.35793 * 14 12 11 40 40 H 1.09002 * 109.47314 * 299.35793 * 14 12 11 41 41 H 1.09004 * 109.46745 * 59.36076 * 14 12 11 42 42 H 0.96998 * 120.00079 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.59007 * 186.60973 * 24 15 12 44 44 H 1.08997 * 109.70838 * 66.24478 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0723 2.8633 0.0013 6 8 3.2842 3.7851 0.0017 7 7 5.3973 3.1096 0.0024 8 6 5.8857 4.4908 0.0025 9 1 5.2129 5.1145 0.5910 10 6 7.2888 4.5365 0.6120 11 6 8.2263 3.6346 -0.1953 12 6 8.3075 4.1479 -1.6364 13 1 8.7765 5.1319 -1.6479 14 6 9.1316 3.1770 -2.4842 15 7 6.9464 4.2448 -2.1812 16 6 6.6219 3.6302 -3.3612 17 1 7.1418 2.7332 -3.6636 18 6 5.6248 4.1602 -4.1684 19 7 5.1979 5.3887 -3.9662 20 14 4.8890 3.1298 -5.5419 21 1 3.7215 2.3735 -5.0222 22 1 4.4502 4.0193 -6.6472 23 1 5.9101 2.1779 -6.0481 24 6 5.9403 5.0139 -1.4364 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.9329 0.9288 0.8909 33 1 3.9337 0.9285 -0.8891 34 1 6.0277 2.3723 0.0025 35 1 7.6614 5.5606 0.5891 36 1 7.2480 4.1881 1.6440 37 1 7.8410 2.6150 -0.1935 38 1 9.2200 3.6487 0.2524 39 1 9.1773 3.5399 -3.5111 40 1 10.1408 3.1066 -2.0785 41 1 8.6637 2.1926 -2.4673 42 1 4.5014 5.7591 -4.5306 43 1 4.9647 4.8915 -1.9068 44 1 6.2138 6.0690 -1.4314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131856227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:20 Heat of formation + Delta-G solvation = -62.661032 kcal Electronic energy + Delta-G solvation = -22016.994461 eV Core-core repulsion = 18967.980779 eV Total energy + Delta-G solvation = -3049.013682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.97597 -39.21936 -36.28754 -35.67142 -34.48530 -32.50312 -31.74697 -30.92424 -27.87408 -26.83298 -25.44491 -23.87218 -22.36221 -21.95730 -21.34700 -20.33694 -18.28585 -17.94751 -17.11719 -16.90326 -16.42494 -15.82692 -15.53370 -15.44155 -14.95431 -14.70273 -14.59530 -14.45922 -13.97970 -13.79610 -13.49480 -13.21402 -12.99061 -12.83862 -12.61719 -12.55304 -12.41179 -12.18834 -12.11100 -12.07760 -12.02374 -11.85404 -11.56344 -11.45652 -11.20557 -11.03949 -10.71003 -10.50562 -9.86812 -8.57228 -7.80983 -5.26843 1.41263 1.43329 1.50936 1.84013 2.47417 2.51551 3.34634 3.64245 3.87405 3.96337 4.05171 4.07264 4.11945 4.19877 4.39294 4.47413 4.52149 4.64463 4.66183 4.73515 4.80677 4.84334 4.95105 4.97542 5.00333 5.06020 5.10752 5.12325 5.14226 5.27543 5.28591 5.34449 5.39150 5.49518 5.58148 5.63403 5.71878 5.76258 5.81285 6.44990 6.79359 7.19253 7.49960 7.93966 8.44805 9.24113 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013937 B = 0.007327 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.534941 B = 3820.331038 C = 4999.129099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.102 4.102 4 C -0.131 4.131 5 C 0.499 3.501 6 O -0.600 6.600 7 N -0.694 5.694 8 C 0.127 3.873 9 H 0.059 0.941 10 C -0.110 4.110 11 C -0.118 4.118 12 C 0.153 3.847 13 H 0.010 0.990 14 C -0.128 4.128 15 N -0.594 5.594 16 C -0.234 4.234 17 H 0.079 0.921 18 C -0.059 4.059 19 N -0.940 5.940 20 Si 0.952 3.048 21 H -0.293 1.293 22 H -0.303 1.303 23 H -0.259 1.259 24 C 0.172 3.828 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.041 0.959 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.058 0.942 32 H 0.126 0.874 33 H 0.098 0.902 34 H 0.408 0.592 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.033 0.967 40 H 0.075 0.925 41 H 0.054 0.946 42 H 0.241 0.759 43 H 0.047 0.953 44 H -0.010 1.010 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.231 -11.952 11.687 16.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.140 4.140 4 C -0.170 4.170 5 C 0.287 3.713 6 O -0.482 6.482 7 N -0.345 5.345 8 C 0.020 3.980 9 H 0.077 0.923 10 C -0.147 4.147 11 C -0.156 4.156 12 C 0.048 3.952 13 H 0.028 0.972 14 C -0.185 4.185 15 N -0.318 5.318 16 C -0.365 4.365 17 H 0.097 0.903 18 C -0.253 4.253 19 N -0.587 5.587 20 Si 0.782 3.218 21 H -0.221 1.221 22 H -0.231 1.231 23 H -0.183 1.183 24 C 0.044 3.956 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.144 0.856 33 H 0.116 0.884 34 H 0.245 0.755 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.052 0.948 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.050 0.950 43 H 0.065 0.935 44 H 0.008 0.992 Dipole moment (debyes) X Y Z Total from point charges 1.627 -11.234 11.583 16.217 hybrid contribution -0.592 0.280 -1.383 1.530 sum 1.035 -10.954 10.200 15.003 Atomic orbital electron populations 1.21780 0.95621 1.02225 1.01477 1.21517 0.96223 0.94748 1.03033 1.21318 0.93390 0.97875 1.01433 1.21700 0.97543 0.91806 1.05963 1.21428 0.82413 0.92745 0.74689 1.90643 1.56629 1.48495 1.52394 1.45797 1.06611 1.08645 1.73416 1.21420 0.95962 0.83441 0.97190 0.92329 1.21661 0.92502 1.01187 0.99394 1.21952 0.99868 0.98953 0.94876 1.20784 0.85055 0.95978 0.93432 0.97226 1.21721 0.98945 0.98805 0.99051 1.44268 1.05362 1.60079 1.22088 1.19460 1.16808 1.04054 0.96153 0.90302 1.25786 1.03019 0.96119 1.00382 1.70178 1.31898 1.14816 1.41856 0.85474 0.78810 0.78299 0.79261 1.22097 1.23075 1.18341 1.20842 0.93893 0.91159 0.89657 0.91162 0.92646 0.93952 0.89889 0.91679 0.94708 0.92285 0.85630 0.88352 0.75522 0.91338 0.89581 0.91498 0.89213 0.94756 0.90603 0.92737 0.94980 0.93465 0.99176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.91 71.98 0.71 -2.25 16 2 C -0.12 -2.37 5.93 30.59 0.18 -2.19 16 3 C -0.10 -2.83 4.50 30.59 0.14 -2.69 16 4 C -0.13 -3.49 5.70 29.85 0.17 -3.32 16 5 C 0.50 18.71 7.80 87.66 0.68 19.39 16 6 O -0.60 -28.56 15.64 -3.02 -0.05 -28.60 16 7 N -0.69 -23.95 4.92 -442.16 -2.17 -26.13 16 8 C 0.13 4.88 2.81 45.07 0.13 5.01 16 9 H 0.06 2.43 7.58 -2.39 -0.02 2.41 16 10 C -0.11 -3.17 5.59 30.65 0.17 -3.00 16 11 C -0.12 -3.24 5.21 30.69 0.16 -3.08 16 12 C 0.15 5.72 3.49 44.97 0.16 5.88 16 13 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 14 C -0.13 -4.24 7.95 71.98 0.57 -3.66 16 15 N -0.59 -28.43 2.91 -675.23 -1.96 -30.40 16 16 C -0.23 -12.39 8.60 84.03 0.72 -11.67 16 17 H 0.08 3.95 6.21 -2.91 -0.02 3.93 16 18 C -0.06 -3.36 4.96 84.86 0.42 -2.93 16 19 N -0.94 -58.84 11.14 21.65 0.24 -58.60 16 20 Si 0.95 46.38 29.58 68.60 2.03 48.41 16 21 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 22 H -0.30 -15.23 7.11 99.48 0.71 -14.53 16 23 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 24 C 0.17 8.64 4.89 86.36 0.42 9.06 16 25 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.03 1.19 8.10 -2.39 -0.02 1.17 16 31 H 0.06 1.70 8.10 -2.39 -0.02 1.68 16 32 H 0.13 2.33 8.14 -2.39 -0.02 2.32 16 33 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.41 11.61 6.77 -92.71 -0.63 10.98 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.07 1.73 6.40 -2.39 -0.02 1.71 16 38 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.03 1.30 7.62 -2.38 -0.02 1.28 16 40 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.05 1.77 7.44 -2.39 -0.02 1.75 16 42 H 0.24 14.99 8.31 -92.71 -0.77 14.22 16 43 H 0.05 2.86 6.06 -2.39 -0.01 2.85 16 44 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 Total: -1.00 -72.97 341.29 3.05 -69.91 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.33 Total: 20.87 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 4.64 Total: 4.54 kcal Atomic # 7 Polarization: -111.23 SS G_CDS: -3.90 Total: -115.13 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.05 Total: -28.60 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -72.97 3.05 -69.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131856227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.253 kcal (2) G-P(sol) polarization free energy of solvation -72.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds