Wall clock time and date at job start Mon Mar 30 2020 00:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47410 * 2 1 4 4 C 1.52998 * 109.47036 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.46912 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99650 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00078 * 180.02562 * 5 4 3 8 8 C 1.46496 * 120.00128 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.52515 * 325.08586 * 8 7 5 10 10 C 1.53041 * 109.49940 * 205.00189 * 8 7 5 11 11 C 1.53044 * 109.53917 * 301.41531 * 10 8 7 12 12 C 1.53193 * 109.31249 * 298.63545 * 11 10 8 13 13 H 1.09000 * 109.58457 * 294.70167 * 12 11 10 14 14 C 1.52994 * 109.58478 * 174.42225 * 12 11 10 15 15 N 1.46919 * 108.89401 * 54.56317 * 12 11 10 16 16 C 1.36935 * 120.63384 * 126.45946 * 15 12 11 17 17 H 1.08001 * 119.99758 * 331.66471 * 16 15 12 18 18 C 1.38810 * 120.00225 * 151.65606 * 16 15 12 19 19 N 1.31616 * 120.00488 * 160.60051 * 18 16 15 20 20 Si 1.86808 * 120.00031 * 340.60244 * 18 16 15 21 21 H 1.48503 * 109.46669 * 94.81655 * 20 18 16 22 22 H 1.48490 * 109.47106 * 214.81588 * 20 18 16 23 23 H 1.48502 * 109.47048 * 334.82036 * 20 18 16 24 24 C 1.46968 * 118.71452 * 306.64010 * 15 12 11 25 25 H 1.09001 * 109.47434 * 59.99182 * 1 2 3 26 26 H 1.08992 * 109.47478 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46545 * 299.99547 * 1 2 3 28 28 H 1.09003 * 109.46545 * 240.00453 * 2 1 3 29 29 H 1.09001 * 109.47434 * 120.00817 * 2 1 3 30 30 H 1.09009 * 109.46586 * 60.00357 * 3 2 1 31 31 H 1.08997 * 109.47051 * 300.00588 * 3 2 1 32 32 H 1.08998 * 109.46834 * 60.01017 * 4 3 2 33 33 H 1.08997 * 109.47659 * 300.00189 * 4 3 2 34 34 H 0.97010 * 119.99877 * 0.02562 * 7 5 4 35 35 H 1.08999 * 109.46094 * 181.39199 * 10 8 7 36 36 H 1.09005 * 109.44666 * 61.42760 * 10 8 7 37 37 H 1.08996 * 109.49840 * 178.68182 * 11 10 8 38 38 H 1.09000 * 109.52034 * 58.60152 * 11 10 8 39 39 H 1.08998 * 109.47436 * 60.28485 * 14 12 11 40 40 H 1.09001 * 109.47306 * 300.28176 * 14 12 11 41 41 H 1.09003 * 109.46939 * 180.28404 * 14 12 11 42 42 H 0.96996 * 120.00485 * 179.97438 * 19 18 16 43 43 H 1.08994 * 109.46817 * 293.57488 * 24 15 12 44 44 H 1.09002 * 109.59169 * 173.21366 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0724 2.8633 0.0000 6 8 3.2843 3.7851 0.0013 7 7 5.3974 3.1095 -0.0009 8 6 5.8858 4.4907 -0.0009 9 1 5.2126 5.1151 -0.5882 10 6 7.2883 4.5366 -0.6117 11 6 8.2268 3.6343 0.1929 12 6 8.3101 4.1467 1.6342 13 1 8.7815 5.1295 1.6459 14 6 9.1343 3.1725 2.4780 15 7 6.9509 4.2458 2.1832 16 6 6.6290 3.6321 3.3642 17 1 7.1562 2.7408 3.6708 18 6 5.6253 4.1557 4.1675 19 7 5.0508 3.4004 5.0794 20 14 5.0897 5.9327 3.9541 21 1 3.9130 5.9897 3.0500 22 1 4.7262 6.5022 5.2763 23 1 6.2043 6.7184 3.3661 24 6 5.9426 5.0129 1.4382 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5140 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 3.9329 0.9288 -0.8909 33 1 3.9338 0.9284 0.8890 34 1 6.0278 2.3721 -0.0024 35 1 7.6610 5.5607 -0.5888 36 1 7.2462 4.1885 -1.6438 37 1 9.2197 3.6492 -0.2565 38 1 7.8419 2.6145 0.1910 39 1 10.1407 3.0966 2.0662 40 1 8.6614 2.1905 2.4650 41 1 9.1882 3.5363 3.5042 42 1 4.3497 3.7663 5.6409 43 1 6.2187 6.0673 1.4337 44 1 4.9678 4.8901 1.9101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131856228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:23 Heat of formation + Delta-G solvation = -37.974157 kcal Electronic energy + Delta-G solvation = -22076.141468 eV Core-core repulsion = 19028.198289 eV Total energy + Delta-G solvation = -3047.943179 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.63002 -37.86679 -35.19569 -34.14228 -32.71645 -31.20839 -30.67893 -29.83257 -26.45457 -24.98676 -24.29044 -22.67254 -21.23176 -20.50124 -20.05067 -18.88288 -16.76123 -16.44123 -15.74545 -15.51440 -15.05547 -14.50947 -14.32517 -13.74221 -13.64188 -13.53899 -13.47687 -12.99292 -12.72849 -12.34326 -12.16563 -12.06147 -11.74608 -11.49689 -11.27311 -11.14804 -11.08632 -10.94945 -10.83584 -10.51999 -10.42504 -10.39621 -10.27562 -9.92618 -9.68063 -9.34139 -9.24625 -8.67607 -8.34348 -6.87535 -5.89777 -3.26197 3.21665 3.44982 3.54678 3.55716 3.75453 4.60480 4.90028 4.98016 5.06237 5.07942 5.19893 5.29079 5.32286 5.41958 5.47241 5.50495 5.66435 5.79435 5.82963 5.90532 5.94815 5.98280 6.02921 6.04696 6.14682 6.20221 6.24247 6.27116 6.32685 6.42346 6.42982 6.49890 6.51791 6.55040 6.75047 6.95652 7.03934 7.12519 8.00719 8.09977 8.38638 8.81682 8.98558 9.78713 10.15698 11.25635 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015728 B = 0.006969 C = 0.005848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.797895 B = 4016.796161 C = 4786.770255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.103 4.103 4 C -0.139 4.139 5 C 0.514 3.486 6 O -0.553 6.553 7 N -0.704 5.704 8 C 0.127 3.873 9 H 0.078 0.922 10 C -0.119 4.119 11 C -0.131 4.131 12 C 0.170 3.830 13 H 0.029 0.971 14 C -0.136 4.136 15 N -0.598 5.598 16 C -0.257 4.257 17 H 0.090 0.910 18 C 0.028 3.972 19 N -0.909 5.909 20 Si 0.874 3.126 21 H -0.286 1.286 22 H -0.305 1.305 23 H -0.271 1.271 24 C 0.115 3.885 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.397 0.603 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.039 0.961 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.261 0.739 43 H 0.030 0.970 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.194 -4.741 -12.765 13.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.141 4.141 4 C -0.179 4.179 5 C 0.301 3.699 6 O -0.431 6.431 7 N -0.355 5.355 8 C 0.021 3.979 9 H 0.096 0.904 10 C -0.157 4.157 11 C -0.171 4.171 12 C 0.063 3.937 13 H 0.046 0.954 14 C -0.193 4.193 15 N -0.322 5.322 16 C -0.385 4.385 17 H 0.108 0.892 18 C -0.171 4.171 19 N -0.552 5.552 20 Si 0.705 3.295 21 H -0.213 1.213 22 H -0.233 1.233 23 H -0.196 1.196 24 C -0.012 4.012 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.232 0.768 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.048 0.952 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.537 -4.092 -12.602 13.261 hybrid contribution -0.072 0.722 0.077 0.730 sum 0.465 -3.370 -12.525 12.979 Atomic orbital electron populations 1.21755 0.95998 1.01195 1.01943 1.21547 0.95866 0.96957 1.01848 1.21339 0.93151 0.96185 1.03428 1.21655 0.97808 0.94460 1.04021 1.20582 0.82364 0.91471 0.75485 1.90654 1.55463 1.46634 1.50398 1.45844 1.06662 1.08615 1.74399 1.21431 0.94365 0.83473 0.98647 0.90407 1.21690 0.94794 1.00872 0.98311 1.22063 0.98152 0.99225 0.97641 1.20461 0.86229 0.96202 0.90777 0.95367 1.21804 0.97013 0.99827 1.00703 1.44381 1.04085 1.61059 1.22706 1.18846 1.18551 1.06183 0.94921 0.89229 1.25254 0.98203 0.97422 0.96246 1.69801 1.25925 1.35172 1.24313 0.87048 0.78673 0.88079 0.75715 1.21321 1.23346 1.19586 1.21762 0.94709 0.93860 0.90826 0.92905 0.93025 0.92581 0.92311 0.91817 0.91066 0.91662 0.89731 0.88615 0.76754 0.91119 0.92470 0.92425 0.92203 0.94208 0.92523 0.91788 0.92924 0.95201 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 37.16 0.37 -1.24 16 2 C -0.12 -1.43 5.93 -26.73 -0.16 -1.58 16 3 C -0.10 -1.47 4.50 -26.73 -0.12 -1.59 16 4 C -0.14 -2.02 5.70 -27.88 -0.16 -2.17 16 5 C 0.51 9.56 7.80 -10.99 -0.09 9.48 16 6 O -0.55 -12.41 15.64 5.56 0.09 -12.32 16 7 N -0.70 -12.23 4.92 -53.69 -0.26 -12.49 16 8 C 0.13 2.31 2.81 -67.81 -0.19 2.12 16 9 H 0.08 1.44 7.58 -51.93 -0.39 1.05 16 10 C -0.12 -1.72 5.59 -26.69 -0.15 -1.87 16 11 C -0.13 -1.94 5.21 -26.61 -0.14 -2.08 16 12 C 0.17 3.13 3.49 -67.61 -0.24 2.90 16 13 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 14 C -0.14 -2.38 7.94 37.15 0.29 -2.08 16 15 N -0.60 -13.61 2.69 -164.75 -0.44 -14.05 16 16 C -0.26 -6.91 9.07 -15.06 -0.14 -7.04 16 17 H 0.09 2.53 6.36 -52.49 -0.33 2.19 16 18 C 0.03 0.80 5.25 -17.43 -0.09 0.71 16 19 N -0.91 -27.99 13.97 55.49 0.78 -27.21 16 20 Si 0.87 23.34 24.36 -169.99 -4.14 19.20 16 21 H -0.29 -7.82 6.72 56.52 0.38 -7.44 16 22 H -0.30 -8.27 7.11 56.52 0.40 -7.87 16 23 H -0.27 -7.01 6.44 56.52 0.36 -6.64 16 24 C 0.11 2.58 3.79 -3.69 -0.01 2.57 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.19 8.10 -51.92 -0.42 0.77 16 31 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.40 6.10 6.77 -40.82 -0.28 5.82 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.88 6.40 -51.93 -0.33 0.54 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 1.03 7.43 -51.93 -0.39 0.64 16 41 H 0.06 1.24 7.63 -51.93 -0.40 0.85 16 42 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 43 H 0.03 0.67 6.94 -51.93 -0.36 0.31 16 44 H 0.08 2.08 4.62 -51.93 -0.24 1.84 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -32.34 334.77 -7.58 -39.93 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.83 Total: 3.79 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -0.82 Total: -1.88 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.07 Total: -53.76 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.09 Total: -12.32 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -4.14 Total: 19.20 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.34 -7.58 -39.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131856228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.951 kcal (2) G-P(sol) polarization free energy of solvation -32.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds