Wall clock time and date at job start Mon Mar 30 2020 00:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47410 * 2 1 4 4 C 1.52998 * 109.47036 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.46912 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99650 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00078 * 180.02562 * 5 4 3 8 8 C 1.46496 * 120.00128 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.52515 * 325.08586 * 8 7 5 10 10 C 1.53041 * 109.49940 * 205.00189 * 8 7 5 11 11 C 1.53044 * 109.53917 * 301.41531 * 10 8 7 12 12 C 1.53193 * 109.31249 * 298.63545 * 11 10 8 13 13 H 1.09000 * 109.58457 * 294.70167 * 12 11 10 14 14 C 1.52994 * 109.58478 * 174.42225 * 12 11 10 15 15 N 1.46919 * 108.89401 * 54.56317 * 12 11 10 16 16 C 1.36935 * 120.63384 * 126.45946 * 15 12 11 17 17 H 1.08001 * 119.99758 * 331.66471 * 16 15 12 18 18 C 1.38810 * 120.00225 * 151.65606 * 16 15 12 19 19 N 1.31616 * 120.00488 * 160.60051 * 18 16 15 20 20 Si 1.86808 * 120.00031 * 340.60244 * 18 16 15 21 21 H 1.48503 * 109.46669 * 94.81655 * 20 18 16 22 22 H 1.48490 * 109.47106 * 214.81588 * 20 18 16 23 23 H 1.48502 * 109.47048 * 334.82036 * 20 18 16 24 24 C 1.46968 * 118.71452 * 306.64010 * 15 12 11 25 25 H 1.09001 * 109.47434 * 59.99182 * 1 2 3 26 26 H 1.08992 * 109.47478 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46545 * 299.99547 * 1 2 3 28 28 H 1.09003 * 109.46545 * 240.00453 * 2 1 3 29 29 H 1.09001 * 109.47434 * 120.00817 * 2 1 3 30 30 H 1.09009 * 109.46586 * 60.00357 * 3 2 1 31 31 H 1.08997 * 109.47051 * 300.00588 * 3 2 1 32 32 H 1.08998 * 109.46834 * 60.01017 * 4 3 2 33 33 H 1.08997 * 109.47659 * 300.00189 * 4 3 2 34 34 H 0.97010 * 119.99877 * 0.02562 * 7 5 4 35 35 H 1.08999 * 109.46094 * 181.39199 * 10 8 7 36 36 H 1.09005 * 109.44666 * 61.42760 * 10 8 7 37 37 H 1.08996 * 109.49840 * 178.68182 * 11 10 8 38 38 H 1.09000 * 109.52034 * 58.60152 * 11 10 8 39 39 H 1.08998 * 109.47436 * 60.28485 * 14 12 11 40 40 H 1.09001 * 109.47306 * 300.28176 * 14 12 11 41 41 H 1.09003 * 109.46939 * 180.28404 * 14 12 11 42 42 H 0.96996 * 120.00485 * 179.97438 * 19 18 16 43 43 H 1.08994 * 109.46817 * 293.57488 * 24 15 12 44 44 H 1.09002 * 109.59169 * 173.21366 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0724 2.8633 0.0000 6 8 3.2843 3.7851 0.0013 7 7 5.3974 3.1095 -0.0009 8 6 5.8858 4.4907 -0.0009 9 1 5.2126 5.1151 -0.5882 10 6 7.2883 4.5366 -0.6117 11 6 8.2268 3.6343 0.1929 12 6 8.3101 4.1467 1.6342 13 1 8.7815 5.1295 1.6459 14 6 9.1343 3.1725 2.4780 15 7 6.9509 4.2458 2.1832 16 6 6.6290 3.6321 3.3642 17 1 7.1562 2.7408 3.6708 18 6 5.6253 4.1557 4.1675 19 7 5.0508 3.4004 5.0794 20 14 5.0897 5.9327 3.9541 21 1 3.9130 5.9897 3.0500 22 1 4.7262 6.5022 5.2763 23 1 6.2043 6.7184 3.3661 24 6 5.9426 5.0129 1.4382 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5140 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 3.9329 0.9288 -0.8909 33 1 3.9338 0.9284 0.8890 34 1 6.0278 2.3721 -0.0024 35 1 7.6610 5.5607 -0.5888 36 1 7.2462 4.1885 -1.6438 37 1 9.2197 3.6492 -0.2565 38 1 7.8419 2.6145 0.1910 39 1 10.1407 3.0966 2.0662 40 1 8.6614 2.1905 2.4650 41 1 9.1882 3.5363 3.5042 42 1 4.3497 3.7663 5.6409 43 1 6.2187 6.0673 1.4337 44 1 4.9678 4.8901 1.9101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131856228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:22 Heat of formation + Delta-G solvation = -59.928308 kcal Electronic energy + Delta-G solvation = -22077.093471 eV Core-core repulsion = 19028.198289 eV Total energy + Delta-G solvation = -3048.895183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.11757 -39.40508 -36.32166 -35.75691 -34.50239 -32.62771 -32.52386 -30.98753 -28.00839 -26.70970 -25.51690 -24.32514 -22.37719 -21.93166 -21.40604 -20.49629 -18.40992 -18.14892 -17.27575 -16.95613 -16.66165 -16.14526 -15.76351 -15.28618 -15.10239 -14.96864 -14.62580 -14.45295 -14.29379 -13.84178 -13.68672 -13.40316 -13.26344 -13.21676 -12.64076 -12.51964 -12.39021 -12.20556 -12.17152 -12.05524 -11.87706 -11.78819 -11.65558 -11.46642 -11.37641 -11.12394 -10.75998 -10.72636 -9.96638 -8.81278 -8.15131 -5.42874 1.26704 1.31108 1.37417 1.75665 2.39346 2.41685 3.06505 3.32541 3.79636 3.93632 3.95999 4.01518 4.05926 4.13066 4.31315 4.37323 4.47658 4.54137 4.57554 4.63672 4.67171 4.76410 4.80924 4.87463 4.94284 4.97712 5.03183 5.03878 5.10411 5.10976 5.20801 5.27063 5.28842 5.38810 5.48523 5.53188 5.63129 5.68284 5.93244 6.19980 6.70228 6.95845 7.40368 7.68280 8.09214 9.04045 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015728 B = 0.006969 C = 0.005848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.797895 B = 4016.796161 C = 4786.770255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.101 4.101 4 C -0.132 4.132 5 C 0.502 3.498 6 O -0.600 6.600 7 N -0.697 5.697 8 C 0.130 3.870 9 H 0.072 0.928 10 C -0.109 4.109 11 C -0.121 4.121 12 C 0.157 3.843 13 H 0.034 0.966 14 C -0.130 4.130 15 N -0.607 5.607 16 C -0.217 4.217 17 H 0.076 0.924 18 C -0.031 4.031 19 N -0.954 5.954 20 Si 0.923 3.077 21 H -0.306 1.306 22 H -0.315 1.315 23 H -0.257 1.257 24 C 0.112 3.888 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.033 0.967 31 H 0.061 0.939 32 H 0.127 0.873 33 H 0.094 0.906 34 H 0.410 0.590 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.045 0.955 41 H 0.034 0.966 42 H 0.254 0.746 43 H 0.029 0.971 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.435 -5.778 -15.841 17.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.139 4.139 4 C -0.171 4.171 5 C 0.290 3.710 6 O -0.481 6.481 7 N -0.348 5.348 8 C 0.023 3.977 9 H 0.090 0.910 10 C -0.147 4.147 11 C -0.160 4.160 12 C 0.053 3.947 13 H 0.052 0.948 14 C -0.188 4.188 15 N -0.332 5.332 16 C -0.347 4.347 17 H 0.093 0.907 18 C -0.226 4.226 19 N -0.602 5.602 20 Si 0.755 3.245 21 H -0.235 1.235 22 H -0.244 1.244 23 H -0.181 1.181 24 C -0.014 4.014 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.145 0.855 33 H 0.112 0.888 34 H 0.247 0.753 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.047 0.953 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.850 -5.126 -15.726 16.784 hybrid contribution -0.686 1.038 0.976 1.581 sum 2.164 -4.088 -14.750 15.458 Atomic orbital electron populations 1.21774 0.95512 1.02251 1.01500 1.21517 0.96320 0.94798 1.02948 1.21313 0.93286 0.97897 1.01437 1.21697 0.97665 0.91926 1.05828 1.21403 0.82441 0.92734 0.74388 1.90632 1.56639 1.48402 1.52467 1.45841 1.06644 1.08813 1.73511 1.21335 0.97117 0.83622 0.95584 0.91028 1.21681 0.91593 1.01807 0.99604 1.21974 1.00431 0.99010 0.94603 1.20841 0.83524 0.97039 0.93301 0.94776 1.21747 0.99146 0.98659 0.99219 1.44545 1.06418 1.60634 1.21647 1.18877 1.15900 1.04720 0.95200 0.90691 1.25728 0.99844 0.99717 0.97281 1.69896 1.27652 1.36238 1.26414 0.86261 0.77910 0.85875 0.74426 1.23472 1.24433 1.18124 1.21685 0.92360 0.94077 0.93308 0.92486 0.91175 0.93996 0.89823 0.91962 0.94817 0.92000 0.85483 0.88809 0.75316 0.90097 0.89098 0.88497 0.91854 0.90065 0.93571 0.94684 0.93652 0.95335 0.94726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.91 71.98 0.71 -2.36 16 2 C -0.12 -2.52 5.93 30.59 0.18 -2.34 16 3 C -0.10 -2.88 4.50 30.59 0.14 -2.74 16 4 C -0.13 -3.63 5.70 29.85 0.17 -3.46 16 5 C 0.50 18.48 7.80 87.66 0.68 19.17 16 6 O -0.60 -27.65 15.64 -3.03 -0.05 -27.69 16 7 N -0.70 -22.97 4.92 -442.17 -2.17 -25.15 16 8 C 0.13 4.48 2.81 45.07 0.13 4.61 16 9 H 0.07 2.58 7.58 -2.39 -0.02 2.56 16 10 C -0.11 -2.66 5.59 30.62 0.17 -2.49 16 11 C -0.12 -2.95 5.21 30.67 0.16 -2.79 16 12 C 0.16 5.31 3.49 44.97 0.16 5.47 16 13 H 0.03 1.15 8.14 -2.39 -0.02 1.14 16 14 C -0.13 -4.19 7.94 71.98 0.57 -3.62 16 15 N -0.61 -27.01 2.69 -675.15 -1.81 -28.82 16 16 C -0.22 -11.77 9.07 84.03 0.76 -11.01 16 17 H 0.08 4.28 6.36 -2.91 -0.02 4.26 16 18 C -0.03 -1.88 5.25 84.86 0.45 -1.44 16 19 N -0.95 -61.17 13.97 21.65 0.30 -60.87 16 20 Si 0.92 50.34 24.36 68.60 1.67 52.01 16 21 H -0.31 -17.47 6.72 99.48 0.67 -16.80 16 22 H -0.31 -17.43 7.11 99.48 0.71 -16.72 16 23 H -0.26 -13.14 6.44 99.48 0.64 -12.50 16 24 C 0.11 4.98 3.79 86.36 0.33 5.31 16 25 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 26 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.03 1.18 8.10 -2.38 -0.02 1.16 16 31 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 32 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.41 11.34 6.77 -92.70 -0.63 10.71 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.06 1.53 6.40 -2.39 -0.02 1.52 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.05 1.57 7.43 -2.39 -0.02 1.55 16 41 H 0.03 1.31 7.63 -2.39 -0.02 1.29 16 42 H 0.25 15.93 8.31 -92.71 -0.77 15.16 16 43 H 0.03 1.27 6.94 -2.39 -0.02 1.25 16 44 H 0.03 1.86 4.62 -2.39 -0.01 1.85 16 Total: -1.00 -74.74 334.77 2.77 -71.97 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.23 Total: 16.26 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 4.61 Total: 2.30 kcal Atomic # 7 Polarization: -111.16 SS G_CDS: -3.69 Total: -114.84 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.05 Total: -27.69 kcal Atomic # 14 Polarization: 50.34 SS G_CDS: 1.67 Total: 52.01 kcal Total: -74.74 2.77 -71.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131856228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.037 kcal (2) G-P(sol) polarization free energy of solvation -74.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds