Wall clock time and date at job start Mon Mar 30 2020 00:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46976 * 2 1 4 4 C 1.53002 * 109.46976 * 180.02562 * 3 2 1 5 5 C 1.50693 * 109.46969 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00174 * 0.02562 * 5 4 3 7 7 N 1.34783 * 119.99707 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99537 * 180.02562 * 7 5 4 9 9 H 1.08997 * 109.50135 * 34.66510 * 8 7 5 10 10 C 1.53044 * 109.49641 * 154.72583 * 8 7 5 11 11 C 1.53040 * 109.53862 * 181.31436 * 10 8 7 12 12 C 1.53187 * 109.31397 * 298.63565 * 11 10 8 13 13 H 1.09004 * 109.58804 * 294.84628 * 12 11 10 14 14 C 1.53000 * 109.58642 * 174.42079 * 12 11 10 15 15 N 1.46930 * 108.77417 * 54.63432 * 12 11 10 16 16 C 1.36936 * 120.62708 * 126.41453 * 15 12 11 17 17 H 1.08000 * 120.00221 * 330.16037 * 16 15 12 18 18 C 1.38812 * 119.99986 * 150.16223 * 16 15 12 19 19 N 1.31623 * 119.99887 * 344.48150 * 18 16 15 20 20 Si 1.86797 * 120.00248 * 164.48453 * 18 16 15 21 21 H 1.48504 * 109.47325 * 89.99710 * 20 18 16 22 22 H 1.48499 * 109.47490 * 210.00023 * 20 18 16 23 23 H 1.48506 * 109.46995 * 330.00018 * 20 18 16 24 24 C 1.46926 * 118.73980 * 306.39083 * 15 12 11 25 25 H 1.08996 * 109.47205 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46994 * 299.99898 * 1 2 3 27 27 H 1.08998 * 109.47101 * 59.99881 * 1 2 3 28 28 H 1.09000 * 109.47202 * 239.99760 * 2 1 3 29 29 H 1.08995 * 109.47210 * 119.99605 * 2 1 3 30 30 H 1.08995 * 109.46917 * 59.99936 * 3 2 1 31 31 H 1.08995 * 109.46829 * 299.99838 * 3 2 1 32 32 H 1.09007 * 109.46994 * 60.00102 * 4 3 2 33 33 H 1.08998 * 109.47101 * 300.00118 * 4 3 2 34 34 H 0.96989 * 120.00149 * 359.73106 * 7 5 4 35 35 H 1.08995 * 109.45716 * 301.33606 * 10 8 7 36 36 H 1.09007 * 109.45996 * 61.30514 * 10 8 7 37 37 H 1.09002 * 109.49549 * 58.59060 * 11 10 8 38 38 H 1.09003 * 109.49724 * 178.68406 * 11 10 8 39 39 H 1.09003 * 109.47117 * 60.00038 * 14 12 11 40 40 H 1.09008 * 109.47275 * 179.97438 * 14 12 11 41 41 H 1.08997 * 109.47090 * 300.00212 * 14 12 11 42 42 H 0.97000 * 120.00086 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.58245 * 293.82108 * 24 15 12 44 44 H 1.09002 * 109.58465 * 173.40105 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0723 2.8633 -0.0013 6 8 3.2842 3.7851 -0.0008 7 7 5.3974 3.1096 -0.0014 8 6 5.8857 4.4908 -0.0014 9 1 5.2103 5.1156 0.5830 10 6 7.2860 4.5376 0.6144 11 6 7.7837 5.9845 0.6448 12 6 7.8672 6.5218 -0.7873 13 1 8.6263 5.9694 -1.3412 14 6 8.2298 8.0079 -0.7573 15 7 6.5600 6.3467 -1.4350 16 6 5.9247 7.4082 -2.0224 17 1 6.0778 8.4072 -1.6416 18 6 5.0841 7.2001 -3.1072 19 7 5.1258 6.0596 -3.7629 20 14 3.8937 8.5387 -3.6366 21 1 4.5523 9.4212 -4.6330 22 1 2.6893 7.9182 -4.2447 23 1 3.4929 9.3412 -2.4531 24 6 5.9477 5.0112 -1.4409 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9330 0.9288 -0.8909 33 1 3.9337 0.9286 0.8891 34 1 6.0277 2.3724 0.0029 35 1 7.2491 4.1449 1.6305 36 1 7.9665 3.9322 0.0156 37 1 7.0904 6.5956 1.2229 38 1 8.7712 6.0200 1.1048 39 1 9.1938 8.1368 -0.2652 40 1 8.2891 8.3882 -1.7772 41 1 7.4653 8.5574 -0.2081 42 1 4.5386 5.9143 -4.5212 43 1 6.5503 4.3357 -2.0481 44 1 4.9396 5.0732 -1.8508 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131856229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:26 Heat of formation + Delta-G solvation = -45.253029 kcal Electronic energy + Delta-G solvation = -21453.682305 eV Core-core repulsion = 18405.423491 eV Total energy + Delta-G solvation = -3048.258815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.45772 -37.64405 -35.32866 -34.26242 -32.76879 -31.12629 -30.04240 -29.66976 -26.12943 -25.11019 -24.09957 -22.22401 -21.22886 -20.48188 -19.82785 -19.13199 -16.54164 -16.40433 -15.83075 -15.54751 -14.92483 -14.31314 -13.90557 -13.76725 -13.72876 -13.49189 -13.33101 -12.89025 -12.51452 -12.35075 -12.27005 -11.85604 -11.45599 -11.27208 -11.15088 -11.08409 -10.98390 -10.86004 -10.65884 -10.55915 -10.46744 -10.36684 -10.22692 -9.93585 -9.70110 -9.40630 -9.20957 -8.44659 -8.37357 -6.56199 -5.70543 -3.15067 3.15092 3.43883 3.51729 3.54080 3.65213 4.57072 4.85783 4.93837 4.94644 5.26823 5.32797 5.38789 5.41124 5.49676 5.53773 5.60711 5.68410 5.73864 5.80648 5.86472 5.89179 6.01115 6.10119 6.14386 6.28180 6.30391 6.35080 6.42338 6.43096 6.48978 6.55736 6.66083 6.79581 7.04060 7.07847 7.16006 7.37266 7.78196 7.89667 8.03594 8.54477 8.77180 9.28682 9.93012 10.48712 11.37729 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.005591 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.930161 B = 5006.882044 C = 6381.360926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.106 4.106 4 C -0.139 4.139 5 C 0.506 3.494 6 O -0.535 6.535 7 N -0.724 5.724 8 C 0.116 3.884 9 H 0.080 0.920 10 C -0.116 4.116 11 C -0.126 4.126 12 C 0.165 3.835 13 H 0.024 0.976 14 C -0.136 4.136 15 N -0.584 5.584 16 C -0.253 4.253 17 H 0.069 0.931 18 C 0.007 3.993 19 N -0.901 5.901 20 Si 0.900 3.100 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.170 3.830 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.391 0.609 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.037 0.963 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.252 0.748 43 H 0.016 0.984 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.451 -11.153 8.979 14.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.144 4.144 4 C -0.180 4.180 5 C 0.292 3.708 6 O -0.411 6.411 7 N -0.375 5.375 8 C 0.010 3.990 9 H 0.098 0.902 10 C -0.154 4.154 11 C -0.166 4.166 12 C 0.058 3.942 13 H 0.042 0.958 14 C -0.194 4.194 15 N -0.307 5.307 16 C -0.383 4.383 17 H 0.087 0.913 18 C -0.192 4.192 19 N -0.545 5.545 20 Si 0.730 3.270 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.204 1.204 24 C 0.043 3.957 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.224 0.776 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.034 0.966 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.225 -10.495 8.819 13.710 hybrid contribution -0.247 0.154 -0.389 0.486 sum -0.472 -10.340 8.430 13.349 Atomic orbital electron populations 1.21764 0.95906 1.01237 1.02097 1.21547 0.95980 0.96905 1.01725 1.21366 0.93076 0.96169 1.03745 1.21682 0.97938 0.94575 1.03772 1.20615 0.82547 0.91361 0.76297 1.90731 1.55145 1.46416 1.48841 1.46117 1.06724 1.09225 1.75384 1.21949 0.94076 0.81176 1.01769 0.90186 1.21675 0.96399 0.98014 0.99306 1.22047 0.99608 0.95226 0.99730 1.20486 0.88689 0.94341 0.90640 0.95814 1.21799 0.98799 0.96812 1.01958 1.44029 1.15809 1.06288 1.64622 1.19122 1.22778 0.88363 1.08016 0.91301 1.25079 1.01320 0.97042 0.95778 1.70007 1.39452 1.24661 1.20342 0.86342 0.80998 0.81347 0.78355 1.21473 1.21596 1.20413 1.21052 1.00381 0.85142 0.89143 0.93009 0.92742 0.92579 0.92054 0.92236 0.91365 0.91037 0.89212 0.89558 0.77608 0.93193 0.92357 0.92117 0.92749 0.94373 0.92025 0.92781 0.93773 0.96620 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.12 -1.20 5.93 -26.73 -0.16 -1.36 16 3 C -0.11 -1.33 4.50 -26.73 -0.12 -1.45 16 4 C -0.14 -1.71 5.70 -27.89 -0.16 -1.86 16 5 C 0.51 8.83 7.80 -10.99 -0.09 8.75 16 6 O -0.54 -12.07 15.64 5.56 0.09 -11.98 16 7 N -0.72 -11.87 5.08 -53.69 -0.27 -12.14 16 8 C 0.12 2.29 2.61 -67.81 -0.18 2.12 16 9 H 0.08 1.82 7.57 -51.93 -0.39 1.43 16 10 C -0.12 -1.90 5.35 -26.69 -0.14 -2.05 16 11 C -0.13 -2.19 5.37 -26.61 -0.14 -2.33 16 12 C 0.17 3.44 3.50 -67.60 -0.24 3.20 16 13 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 14 C -0.14 -2.60 7.95 37.16 0.30 -2.30 16 15 N -0.58 -14.82 2.99 -164.77 -0.49 -15.31 16 16 C -0.25 -7.06 8.58 -15.06 -0.13 -7.19 16 17 H 0.07 1.87 6.23 -52.49 -0.33 1.54 16 18 C 0.01 0.19 4.94 -17.43 -0.09 0.11 16 19 N -0.90 -27.07 11.23 55.49 0.62 -26.45 16 20 Si 0.90 22.71 29.58 -169.99 -5.03 17.68 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.17 4.19 4.86 -3.71 -0.02 4.17 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 31 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 32 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.39 4.95 8.60 -40.82 -0.35 4.60 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 1.27 7.67 -51.92 -0.40 0.87 16 41 H 0.05 1.05 7.40 -51.93 -0.38 0.67 16 42 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 2.69 6.15 -51.93 -0.32 2.37 16 LS Contribution 344.96 15.07 5.20 5.20 Total: -1.00 -32.71 344.96 -8.74 -41.46 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -8.07 Total: 2.80 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -0.79 Total: -1.26 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.14 Total: -53.90 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.98 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.03 Total: 17.68 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.71 -8.74 -41.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131856229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.794 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds