Wall clock time and date at job start Mon Mar 30 2020 00:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46976 * 2 1 4 4 C 1.53002 * 109.46976 * 180.02562 * 3 2 1 5 5 C 1.50693 * 109.46969 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00174 * 0.02562 * 5 4 3 7 7 N 1.34783 * 119.99707 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99537 * 180.02562 * 7 5 4 9 9 H 1.08997 * 109.50135 * 34.66510 * 8 7 5 10 10 C 1.53044 * 109.49641 * 154.72583 * 8 7 5 11 11 C 1.53040 * 109.53862 * 181.31436 * 10 8 7 12 12 C 1.53187 * 109.31397 * 298.63565 * 11 10 8 13 13 H 1.09004 * 109.58804 * 294.84628 * 12 11 10 14 14 C 1.53000 * 109.58642 * 174.42079 * 12 11 10 15 15 N 1.46930 * 108.77417 * 54.63432 * 12 11 10 16 16 C 1.36936 * 120.62708 * 126.41453 * 15 12 11 17 17 H 1.08000 * 120.00221 * 330.16037 * 16 15 12 18 18 C 1.38812 * 119.99986 * 150.16223 * 16 15 12 19 19 N 1.31623 * 119.99887 * 344.48150 * 18 16 15 20 20 Si 1.86797 * 120.00248 * 164.48453 * 18 16 15 21 21 H 1.48504 * 109.47325 * 89.99710 * 20 18 16 22 22 H 1.48499 * 109.47490 * 210.00023 * 20 18 16 23 23 H 1.48506 * 109.46995 * 330.00018 * 20 18 16 24 24 C 1.46926 * 118.73980 * 306.39083 * 15 12 11 25 25 H 1.08996 * 109.47205 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46994 * 299.99898 * 1 2 3 27 27 H 1.08998 * 109.47101 * 59.99881 * 1 2 3 28 28 H 1.09000 * 109.47202 * 239.99760 * 2 1 3 29 29 H 1.08995 * 109.47210 * 119.99605 * 2 1 3 30 30 H 1.08995 * 109.46917 * 59.99936 * 3 2 1 31 31 H 1.08995 * 109.46829 * 299.99838 * 3 2 1 32 32 H 1.09007 * 109.46994 * 60.00102 * 4 3 2 33 33 H 1.08998 * 109.47101 * 300.00118 * 4 3 2 34 34 H 0.96989 * 120.00149 * 359.73106 * 7 5 4 35 35 H 1.08995 * 109.45716 * 301.33606 * 10 8 7 36 36 H 1.09007 * 109.45996 * 61.30514 * 10 8 7 37 37 H 1.09002 * 109.49549 * 58.59060 * 11 10 8 38 38 H 1.09003 * 109.49724 * 178.68406 * 11 10 8 39 39 H 1.09003 * 109.47117 * 60.00038 * 14 12 11 40 40 H 1.09008 * 109.47275 * 179.97438 * 14 12 11 41 41 H 1.08997 * 109.47090 * 300.00212 * 14 12 11 42 42 H 0.97000 * 120.00086 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.58245 * 293.82108 * 24 15 12 44 44 H 1.09002 * 109.58465 * 173.40105 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0723 2.8633 -0.0013 6 8 3.2842 3.7851 -0.0008 7 7 5.3974 3.1096 -0.0014 8 6 5.8857 4.4908 -0.0014 9 1 5.2103 5.1156 0.5830 10 6 7.2860 4.5376 0.6144 11 6 7.7837 5.9845 0.6448 12 6 7.8672 6.5218 -0.7873 13 1 8.6263 5.9694 -1.3412 14 6 8.2298 8.0079 -0.7573 15 7 6.5600 6.3467 -1.4350 16 6 5.9247 7.4082 -2.0224 17 1 6.0778 8.4072 -1.6416 18 6 5.0841 7.2001 -3.1072 19 7 5.1258 6.0596 -3.7629 20 14 3.8937 8.5387 -3.6366 21 1 4.5523 9.4212 -4.6330 22 1 2.6893 7.9182 -4.2447 23 1 3.4929 9.3412 -2.4531 24 6 5.9477 5.0112 -1.4409 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9330 0.9288 -0.8909 33 1 3.9337 0.9286 0.8891 34 1 6.0277 2.3724 0.0029 35 1 7.2491 4.1449 1.6305 36 1 7.9665 3.9322 0.0156 37 1 7.0904 6.5956 1.2229 38 1 8.7712 6.0200 1.1048 39 1 9.1938 8.1368 -0.2652 40 1 8.2891 8.3882 -1.7772 41 1 7.4653 8.5574 -0.2081 42 1 4.5386 5.9143 -4.5212 43 1 6.5503 4.3357 -2.0481 44 1 4.9396 5.0732 -1.8508 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131856229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:25 Heat of formation + Delta-G solvation = -66.886735 kcal Electronic energy + Delta-G solvation = -21454.620413 eV Core-core repulsion = 18405.423491 eV Total energy + Delta-G solvation = -3049.196923 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.93729 -39.28124 -36.36406 -35.84594 -34.65506 -32.51892 -31.79209 -30.98074 -27.79262 -26.88967 -25.28639 -23.97391 -22.37833 -21.82750 -21.33068 -20.74910 -18.34871 -17.90506 -17.31686 -16.89669 -16.60601 -15.84322 -15.51239 -15.40270 -15.03500 -14.88666 -14.56551 -14.46418 -14.10943 -13.72475 -13.48100 -13.22799 -13.07987 -12.77997 -12.70952 -12.55278 -12.30258 -12.19286 -12.13275 -12.06927 -11.99258 -11.85488 -11.66770 -11.44673 -11.40968 -11.13941 -10.70507 -10.54797 -10.01413 -8.62462 -7.87015 -5.33243 1.38552 1.43033 1.50458 1.76622 2.30843 2.50119 3.29671 3.64858 3.85702 3.95490 4.00106 4.06756 4.09788 4.25852 4.38284 4.40512 4.49008 4.62153 4.64428 4.70696 4.76857 4.84107 4.89420 4.95090 5.00137 5.02241 5.06501 5.11264 5.18470 5.28695 5.31019 5.35808 5.39676 5.49418 5.53679 5.54504 5.61256 5.69371 5.81137 6.40465 6.71802 7.14964 7.44326 7.89213 8.38497 9.18235 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.005591 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.930161 B = 5006.882044 C = 6381.360926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.106 4.106 4 C -0.127 4.127 5 C 0.496 3.504 6 O -0.596 6.596 7 N -0.712 5.712 8 C 0.129 3.871 9 H 0.046 0.954 10 C -0.106 4.106 11 C -0.119 4.119 12 C 0.153 3.847 13 H 0.022 0.978 14 C -0.129 4.129 15 N -0.605 5.605 16 C -0.253 4.253 17 H 0.074 0.926 18 C -0.053 4.053 19 N -0.934 5.934 20 Si 0.956 3.044 21 H -0.277 1.277 22 H -0.300 1.300 23 H -0.273 1.273 24 C 0.182 3.818 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.111 0.889 33 H 0.127 0.873 34 H 0.414 0.586 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.044 0.956 42 H 0.244 0.756 43 H -0.002 1.002 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.182 -12.712 11.068 16.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.144 4.144 4 C -0.166 4.166 5 C 0.284 3.716 6 O -0.476 6.476 7 N -0.363 5.363 8 C 0.023 3.977 9 H 0.064 0.936 10 C -0.144 4.144 11 C -0.158 4.158 12 C 0.048 3.952 13 H 0.040 0.960 14 C -0.187 4.187 15 N -0.329 5.329 16 C -0.383 4.383 17 H 0.091 0.909 18 C -0.248 4.248 19 N -0.580 5.580 20 Si 0.785 3.215 21 H -0.203 1.203 22 H -0.227 1.227 23 H -0.198 1.198 24 C 0.054 3.946 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.129 0.871 33 H 0.145 0.855 34 H 0.251 0.749 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.016 0.984 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.562 -12.080 10.937 16.370 hybrid contribution -0.740 0.649 -1.020 1.417 sum 0.822 -11.430 9.917 15.155 Atomic orbital electron populations 1.21796 0.95925 1.02188 1.01407 1.21507 0.95980 0.94625 1.03238 1.21351 0.93636 0.97949 1.01453 1.21724 0.97304 0.90961 1.06639 1.21683 0.82243 0.93081 0.74563 1.90709 1.56649 1.48807 1.51486 1.45960 1.07164 1.08635 1.74576 1.21463 0.96014 0.82378 0.97887 0.93605 1.21638 0.93576 0.98045 1.01170 1.21956 1.01743 0.95254 0.96844 1.20813 0.86195 0.95809 0.92402 0.96032 1.21734 1.00732 0.95329 1.00884 1.44339 1.17909 1.05758 1.64890 1.19472 1.22199 0.89373 1.07274 0.90887 1.25805 1.03384 0.99053 0.96558 1.70163 1.40403 1.26513 1.20958 0.85440 0.78735 0.79201 0.78172 1.20287 1.22652 1.19778 1.20743 0.96858 0.85146 0.91817 0.91172 0.93041 0.93802 0.91042 0.90050 0.92894 0.94344 0.87063 0.85467 0.74900 0.89616 0.90790 0.93127 0.88554 0.90184 0.94361 0.93647 0.94654 0.98445 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.91 71.98 0.71 -2.01 16 2 C -0.12 -2.01 5.93 30.60 0.18 -1.83 16 3 C -0.11 -2.64 4.50 30.60 0.14 -2.50 16 4 C -0.13 -2.86 5.70 29.85 0.17 -2.69 16 5 C 0.50 17.36 7.80 87.65 0.68 18.04 16 6 O -0.60 -28.31 15.64 -3.02 -0.05 -28.36 16 7 N -0.71 -22.63 5.08 -442.17 -2.25 -24.88 16 8 C 0.13 5.11 2.61 45.07 0.12 5.23 16 9 H 0.05 2.14 7.57 -2.39 -0.02 2.13 16 10 C -0.11 -3.16 5.35 30.62 0.16 -2.99 16 11 C -0.12 -3.74 5.37 30.67 0.16 -3.58 16 12 C 0.15 6.18 3.50 44.97 0.16 6.34 16 13 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 14 C -0.13 -4.74 7.95 71.98 0.57 -4.17 16 15 N -0.60 -31.33 2.99 -675.22 -2.02 -33.34 16 16 C -0.25 -14.49 8.58 84.03 0.72 -13.77 16 17 H 0.07 4.03 6.23 -2.91 -0.02 4.02 16 18 C -0.05 -3.16 4.94 84.86 0.42 -2.74 16 19 N -0.93 -58.97 11.23 21.65 0.24 -58.73 16 20 Si 0.96 48.40 29.58 68.60 2.03 50.43 16 21 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 22 H -0.30 -15.51 7.11 99.48 0.71 -14.81 16 23 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 24 C 0.18 9.27 4.86 86.36 0.42 9.69 16 25 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 31 H 0.04 1.19 8.10 -2.39 -0.02 1.17 16 32 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.41 9.32 8.60 -92.72 -0.80 8.53 16 35 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.04 1.55 7.67 -2.38 -0.02 1.53 16 41 H 0.04 1.71 7.40 -2.39 -0.02 1.70 16 42 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16 43 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 44 H 0.04 2.37 6.15 -2.39 -0.01 2.36 16 Total: -1.00 -77.76 344.96 2.74 -75.02 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.15 Total: 16.84 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 4.62 Total: 3.03 kcal Atomic # 7 Polarization: -112.93 SS G_CDS: -4.02 Total: -116.95 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.05 Total: -28.36 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 2.03 Total: 50.43 kcal Total: -77.76 2.74 -75.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131856229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.133 kcal (2) G-P(sol) polarization free energy of solvation -77.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds