Wall clock time and date at job start Mon Mar 30 2020 01:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47477 * 2 1 4 4 C 1.53002 * 109.47366 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46905 * 179.97438 * 4 3 2 6 6 C 1.37096 * 119.99901 * 89.99838 * 5 4 3 7 7 H 1.08003 * 120.00444 * 218.21204 * 6 5 4 8 8 C 1.38953 * 120.00074 * 38.21694 * 6 5 4 9 9 N 1.31413 * 119.99895 * 18.93338 * 8 6 5 10 10 Si 1.86800 * 120.00025 * 198.92351 * 8 6 5 11 11 H 1.48497 * 109.47181 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46890 * 120.00183 * 10 8 6 13 13 H 1.48496 * 109.47413 * 240.00074 * 10 8 6 14 14 C 1.34777 * 119.99795 * 269.99544 * 5 4 3 15 15 O 1.21286 * 119.99970 * 5.39446 * 14 5 4 16 16 C 1.50700 * 119.99591 * 185.39387 * 14 5 4 17 17 C 1.53001 * 109.46924 * 173.81035 * 16 14 5 18 18 H 1.09001 * 109.50018 * 54.92150 * 17 16 14 19 19 C 1.53120 * 109.50509 * 174.99867 * 17 16 14 20 20 C 1.53111 * 109.16127 * 177.59484 * 19 17 16 21 21 C 1.53036 * 109.28244 * 302.34764 * 20 19 17 22 22 N 1.46849 * 109.52313 * 59.17693 * 21 20 19 23 23 C 1.46849 * 111.20078 * 298.26164 * 22 21 20 24 24 H 1.09006 * 109.47505 * 300.00280 * 1 2 3 25 25 H 1.09007 * 109.47116 * 60.00108 * 1 2 3 26 26 H 1.08998 * 109.47597 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47505 * 239.99720 * 2 1 3 28 28 H 1.09007 * 109.47116 * 119.99891 * 2 1 3 29 29 H 1.09007 * 109.46859 * 300.00049 * 3 2 1 30 30 H 1.09001 * 109.47099 * 59.99860 * 3 2 1 31 31 H 1.09003 * 109.46691 * 299.99681 * 4 3 2 32 32 H 1.08994 * 109.47295 * 59.99509 * 4 3 2 33 33 H 0.96998 * 119.99953 * 174.98715 * 9 8 6 34 34 H 1.08998 * 109.47301 * 293.80763 * 16 14 5 35 35 H 1.08998 * 109.47204 * 53.81629 * 16 14 5 36 36 H 1.09002 * 109.52398 * 297.50669 * 19 17 16 37 37 H 1.09006 * 109.52028 * 57.62922 * 19 17 16 38 38 H 1.09000 * 109.50670 * 62.28924 * 20 19 17 39 39 H 1.09000 * 109.50540 * 182.36746 * 20 19 17 40 40 H 1.09000 * 109.46389 * 179.19418 * 21 20 19 41 41 H 1.09002 * 109.46088 * 299.16578 * 21 20 19 42 42 H 1.00901 * 111.00272 * 174.15939 * 22 21 20 43 43 H 1.08998 * 109.45746 * 301.72418 * 23 22 21 44 44 H 1.09000 * 109.46602 * 181.75301 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0583 2.8236 -0.0013 6 6 4.2873 3.4703 1.1857 7 1 4.0440 4.5178 1.2858 8 6 4.8325 2.7780 2.2602 9 7 5.4659 1.6445 2.0581 10 14 4.6651 3.4587 3.9916 11 1 3.9135 4.7388 3.9498 12 1 3.9331 2.4829 4.8385 13 1 6.0151 3.6953 4.5632 14 6 4.2825 3.4586 -1.1688 15 8 3.9883 2.9231 -2.2165 16 6 4.8988 4.8338 -1.1723 17 6 5.1861 5.2602 -2.6133 18 1 4.2715 5.1914 -3.2023 19 6 5.6957 6.7041 -2.6273 20 6 6.0374 7.1025 -4.0656 21 6 7.0791 6.1311 -4.6252 22 7 6.5437 4.7641 -4.5910 23 6 6.2524 4.3421 -3.2149 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.9337 0.9285 0.8892 32 1 3.9330 0.9287 -0.8908 33 1 5.9090 1.1982 2.7967 34 1 4.2087 5.5424 -0.7144 35 1 5.8302 4.8160 -0.6062 36 1 4.9223 7.3671 -2.2395 37 1 6.5874 6.7816 -2.0052 38 1 5.1366 7.0626 -4.6781 39 1 6.4404 8.1152 -4.0768 40 1 7.3140 6.4035 -5.6541 41 1 7.9846 6.1816 -4.0205 42 1 7.1736 4.1176 -5.0419 43 1 7.1618 4.4010 -2.6169 44 1 5.8869 3.3152 -3.2196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160729557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:31 Heat of formation + Delta-G solvation = -64.194698 kcal Electronic energy + Delta-G solvation = -21548.092700 eV Core-core repulsion = 18499.012512 eV Total energy + Delta-G solvation = -3049.080187 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.08424 -37.76518 -35.30171 -33.88293 -32.62215 -31.45393 -31.15759 -28.65278 -26.43347 -24.85764 -23.36602 -22.89371 -21.39464 -20.32219 -19.26398 -18.92307 -16.68985 -16.18110 -15.68436 -14.85307 -14.63183 -14.49742 -14.27623 -14.15579 -13.68765 -13.46636 -13.14387 -12.84650 -12.64094 -12.18440 -12.00858 -11.91320 -11.83645 -11.37374 -11.20670 -11.12091 -10.87202 -10.73746 -10.53913 -10.46121 -10.30037 -10.19456 -10.10761 -10.06675 -9.84703 -9.66457 -9.07589 -8.27749 -8.14232 -7.41368 -6.36137 -4.07127 3.08292 3.19844 3.22962 3.96618 4.11437 4.49357 4.78640 4.97474 5.12728 5.16549 5.31649 5.50911 5.52511 5.60044 5.69853 5.70885 5.75865 5.90614 6.00614 6.10888 6.14667 6.17100 6.24935 6.28079 6.31760 6.39430 6.42473 6.47436 6.50201 6.57246 6.69603 6.79140 6.88367 6.89542 6.98655 7.19666 7.37737 7.38642 7.55412 7.66861 8.00579 8.41231 9.10240 9.58581 10.02164 10.65173 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015569 B = 0.005867 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.012654 B = 4771.341815 C = 5997.567586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.126 4.126 4 C 0.114 3.886 5 N -0.441 5.441 6 C -0.336 4.336 7 H 0.087 0.913 8 C 0.045 3.955 9 N -0.862 5.862 10 Si 0.912 3.088 11 H -0.268 1.268 12 H -0.279 1.279 13 H -0.281 1.281 14 C 0.470 3.530 15 O -0.602 6.602 16 C -0.115 4.115 17 C -0.065 4.065 18 H 0.080 0.920 19 C -0.118 4.118 20 C -0.115 4.115 21 C 0.057 3.943 22 N -0.689 5.689 23 C 0.064 3.936 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.050 0.950 33 H 0.269 0.731 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.024 0.976 42 H 0.337 0.663 43 H 0.020 0.980 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.022 4.794 -4.709 6.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.165 4.165 4 C -0.010 4.010 5 N -0.159 5.159 6 C -0.464 4.464 7 H 0.105 0.895 8 C -0.161 4.161 9 N -0.499 5.499 10 Si 0.739 3.261 11 H -0.192 1.192 12 H -0.205 1.205 13 H -0.207 1.207 14 C 0.259 3.741 15 O -0.488 6.488 16 C -0.155 4.155 17 C -0.085 4.085 18 H 0.099 0.901 19 C -0.156 4.156 20 C -0.153 4.153 21 C -0.072 4.072 22 N -0.320 5.320 23 C -0.065 4.065 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.042 0.958 42 H 0.154 0.846 43 H 0.038 0.962 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.761 4.536 -5.191 6.936 hybrid contribution 0.963 0.185 1.503 1.795 sum 0.202 4.721 -3.687 5.994 Atomic orbital electron populations 1.21757 0.96715 1.00606 1.01451 1.21433 0.94916 0.97905 1.01499 1.21889 0.98085 0.95289 1.01239 1.21409 0.91121 0.85243 1.03198 1.43468 1.55869 1.12048 1.04531 1.19432 1.42485 0.96252 0.88249 0.89536 1.25397 0.94543 0.95991 1.00184 1.69833 1.30149 1.17355 1.32575 0.86105 0.78190 0.79231 0.82591 1.19194 1.20500 1.20737 1.20479 0.81306 0.88539 0.83754 1.90506 1.57107 1.69412 1.31817 1.21398 1.02001 0.95918 0.96200 1.20890 0.99183 0.92782 0.95605 0.90128 1.21667 1.00790 0.96990 0.96112 1.21555 0.99469 0.97422 0.96866 1.21901 0.95499 0.90084 0.99760 1.60266 1.49777 1.02826 1.19105 1.22083 0.96525 1.01088 0.86806 0.93087 0.93088 0.93484 0.92471 0.92340 0.92966 0.92443 0.87827 0.93151 0.92048 0.90514 0.89859 0.92042 0.92468 0.91345 0.92198 0.91544 0.95773 0.84589 0.96211 0.88741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.15 0.37 -1.79 16 2 C -0.12 -2.06 5.93 -26.74 -0.16 -2.22 16 3 C -0.13 -2.63 5.54 -26.73 -0.15 -2.78 16 4 C 0.11 2.73 4.96 -4.04 -0.02 2.71 16 5 N -0.44 -11.04 2.52 -114.81 -0.29 -11.33 16 6 C -0.34 -8.41 8.50 -14.93 -0.13 -8.54 16 7 H 0.09 2.09 7.30 -52.48 -0.38 1.70 16 8 C 0.04 1.11 5.01 -17.47 -0.09 1.02 16 9 N -0.86 -22.51 11.35 55.50 0.63 -21.88 16 10 Si 0.91 19.24 29.60 -169.99 -5.03 14.21 16 11 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 12 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 13 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 14 C 0.47 11.32 7.23 -10.99 -0.08 11.24 16 15 O -0.60 -15.55 13.86 5.55 0.08 -15.47 16 16 C -0.11 -2.30 3.90 -27.88 -0.11 -2.41 16 17 C -0.07 -1.17 1.99 -90.54 -0.18 -1.35 16 18 H 0.08 1.60 7.86 -51.93 -0.41 1.20 16 19 C -0.12 -1.72 5.29 -26.61 -0.14 -1.86 16 20 C -0.12 -1.49 6.09 -26.65 -0.16 -1.65 16 21 C 0.06 0.74 6.55 -3.83 -0.03 0.72 16 22 N -0.69 -10.58 6.85 -113.81 -0.78 -11.35 16 23 C 0.06 1.15 5.57 -3.83 -0.02 1.12 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.10 2.64 5.47 -51.93 -0.28 2.36 16 32 H 0.05 1.26 7.50 -51.93 -0.39 0.87 16 33 H 0.27 6.63 8.32 -40.82 -0.34 6.29 16 34 H 0.08 1.46 7.84 -51.93 -0.41 1.05 16 35 H 0.08 1.71 8.01 -51.93 -0.42 1.29 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.34 4.55 8.90 -39.29 -0.35 4.20 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 1.99 6.22 -51.93 -0.32 1.67 16 LS Contribution 343.37 15.07 5.17 5.17 Total: -1.00 -27.80 343.37 -9.12 -36.92 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -8.01 Total: 9.51 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -0.89 Total: -5.78 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.44 Total: -44.56 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.08 Total: -15.47 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.80 -9.12 -36.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160729557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.275 kcal (2) G-P(sol) polarization free energy of solvation -27.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds