Wall clock time and date at job start Mon Mar 30 2020 01:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47477 * 2 1 4 4 C 1.53002 * 109.47366 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46905 * 179.97438 * 4 3 2 6 6 C 1.37096 * 119.99901 * 89.99838 * 5 4 3 7 7 H 1.08003 * 120.00444 * 218.21204 * 6 5 4 8 8 C 1.38953 * 120.00074 * 38.21694 * 6 5 4 9 9 N 1.31413 * 119.99895 * 18.93338 * 8 6 5 10 10 Si 1.86800 * 120.00025 * 198.92351 * 8 6 5 11 11 H 1.48497 * 109.47181 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46890 * 120.00183 * 10 8 6 13 13 H 1.48496 * 109.47413 * 240.00074 * 10 8 6 14 14 C 1.34777 * 119.99795 * 269.99544 * 5 4 3 15 15 O 1.21286 * 119.99970 * 5.39446 * 14 5 4 16 16 C 1.50700 * 119.99591 * 185.39387 * 14 5 4 17 17 C 1.53001 * 109.46924 * 173.81035 * 16 14 5 18 18 H 1.09001 * 109.50018 * 54.92150 * 17 16 14 19 19 C 1.53120 * 109.50509 * 174.99867 * 17 16 14 20 20 C 1.53111 * 109.16127 * 177.59484 * 19 17 16 21 21 C 1.53036 * 109.28244 * 302.34764 * 20 19 17 22 22 N 1.46849 * 109.52313 * 59.17693 * 21 20 19 23 23 C 1.46849 * 111.20078 * 298.26164 * 22 21 20 24 24 H 1.09006 * 109.47505 * 300.00280 * 1 2 3 25 25 H 1.09007 * 109.47116 * 60.00108 * 1 2 3 26 26 H 1.08998 * 109.47597 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47505 * 239.99720 * 2 1 3 28 28 H 1.09007 * 109.47116 * 119.99891 * 2 1 3 29 29 H 1.09007 * 109.46859 * 300.00049 * 3 2 1 30 30 H 1.09001 * 109.47099 * 59.99860 * 3 2 1 31 31 H 1.09003 * 109.46691 * 299.99681 * 4 3 2 32 32 H 1.08994 * 109.47295 * 59.99509 * 4 3 2 33 33 H 0.96998 * 119.99953 * 174.98715 * 9 8 6 34 34 H 1.08998 * 109.47301 * 293.80763 * 16 14 5 35 35 H 1.08998 * 109.47204 * 53.81629 * 16 14 5 36 36 H 1.09002 * 109.52398 * 297.50669 * 19 17 16 37 37 H 1.09006 * 109.52028 * 57.62922 * 19 17 16 38 38 H 1.09000 * 109.50670 * 62.28924 * 20 19 17 39 39 H 1.09000 * 109.50540 * 182.36746 * 20 19 17 40 40 H 1.09000 * 109.46389 * 179.19418 * 21 20 19 41 41 H 1.09002 * 109.46088 * 299.16578 * 21 20 19 42 42 H 1.00901 * 111.00272 * 174.15939 * 22 21 20 43 43 H 1.08998 * 109.45746 * 301.72418 * 23 22 21 44 44 H 1.09000 * 109.46602 * 181.75301 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0583 2.8236 -0.0013 6 6 4.2873 3.4703 1.1857 7 1 4.0440 4.5178 1.2858 8 6 4.8325 2.7780 2.2602 9 7 5.4659 1.6445 2.0581 10 14 4.6651 3.4587 3.9916 11 1 3.9135 4.7388 3.9498 12 1 3.9331 2.4829 4.8385 13 1 6.0151 3.6953 4.5632 14 6 4.2825 3.4586 -1.1688 15 8 3.9883 2.9231 -2.2165 16 6 4.8988 4.8338 -1.1723 17 6 5.1861 5.2602 -2.6133 18 1 4.2715 5.1914 -3.2023 19 6 5.6957 6.7041 -2.6273 20 6 6.0374 7.1025 -4.0656 21 6 7.0791 6.1311 -4.6252 22 7 6.5437 4.7641 -4.5910 23 6 6.2524 4.3421 -3.2149 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.9337 0.9285 0.8892 32 1 3.9330 0.9287 -0.8908 33 1 5.9090 1.1982 2.7967 34 1 4.2087 5.5424 -0.7144 35 1 5.8302 4.8160 -0.6062 36 1 4.9223 7.3671 -2.2395 37 1 6.5874 6.7816 -2.0052 38 1 5.1366 7.0626 -4.6781 39 1 6.4404 8.1152 -4.0768 40 1 7.3140 6.4035 -5.6541 41 1 7.9846 6.1816 -4.0205 42 1 7.1736 4.1176 -5.0419 43 1 7.1618 4.4010 -2.6169 44 1 5.8869 3.3152 -3.2196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160729557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:30 Heat of formation + Delta-G solvation = -80.236588 kcal Electronic energy + Delta-G solvation = -21548.788328 eV Core-core repulsion = 18499.012512 eV Total energy + Delta-G solvation = -3049.775816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.79597 -39.23680 -37.09621 -35.54937 -34.03058 -33.37168 -32.38308 -30.24545 -27.95301 -26.74522 -24.62425 -24.44082 -22.73868 -21.91937 -20.91115 -20.48334 -18.52606 -17.78510 -17.25309 -16.57890 -16.23934 -16.15214 -15.91601 -15.37193 -15.26866 -14.85289 -14.57706 -14.29530 -13.88075 -13.75348 -13.60802 -13.42584 -13.26204 -13.06846 -12.90673 -12.70948 -12.44902 -12.11329 -12.03343 -11.96011 -11.90785 -11.79748 -11.56415 -11.43285 -11.35477 -11.17844 -10.96824 -10.18205 -9.39246 -9.35553 -8.27555 -6.05565 1.40521 1.48039 1.59671 2.08793 2.32417 2.99933 3.09719 3.31921 3.92883 3.97057 4.02145 4.08061 4.19050 4.24412 4.31315 4.40733 4.48812 4.52796 4.64289 4.70740 4.80165 4.83655 4.86447 4.89840 4.91594 4.98137 5.00382 5.07218 5.08889 5.15086 5.17951 5.27195 5.35729 5.42825 5.45044 5.49846 5.56520 5.61194 6.08468 6.12529 6.46608 6.51936 7.15860 7.65355 8.09586 8.74876 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015569 B = 0.005867 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.012654 B = 4771.341815 C = 5997.567586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.113 4.113 4 C 0.115 3.885 5 N -0.454 5.454 6 C -0.351 4.351 7 H 0.095 0.905 8 C 0.005 3.995 9 N -0.895 5.895 10 Si 0.981 3.019 11 H -0.257 1.257 12 H -0.279 1.279 13 H -0.278 1.278 14 C 0.456 3.544 15 O -0.627 6.627 16 C -0.104 4.104 17 C -0.059 4.059 18 H 0.057 0.943 19 C -0.113 4.113 20 C -0.113 4.113 21 C 0.054 3.946 22 N -0.697 5.697 23 C 0.072 3.928 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.037 0.963 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.028 0.972 33 H 0.272 0.728 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.030 0.970 42 H 0.346 0.654 43 H 0.018 0.982 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.172 6.499 -4.225 7.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.152 4.152 4 C -0.008 4.008 5 N -0.172 5.172 6 C -0.479 4.479 7 H 0.113 0.887 8 C -0.198 4.198 9 N -0.533 5.533 10 Si 0.804 3.196 11 H -0.180 1.180 12 H -0.205 1.205 13 H -0.204 1.204 14 C 0.246 3.754 15 O -0.515 6.515 16 C -0.145 4.145 17 C -0.079 4.079 18 H 0.076 0.924 19 C -0.151 4.151 20 C -0.151 4.151 21 C -0.075 4.075 22 N -0.329 5.329 23 C -0.058 4.058 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.048 0.952 42 H 0.164 0.836 43 H 0.036 0.964 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.910 6.251 -4.719 7.885 hybrid contribution 1.049 -0.398 1.290 1.710 sum 0.139 5.853 -3.429 6.785 Atomic orbital electron populations 1.21708 0.94106 1.02354 1.01764 1.21412 0.97165 0.95229 1.01588 1.21748 0.95629 0.97640 1.00169 1.21356 0.93237 0.85014 1.01231 1.43747 1.56084 1.12294 1.05086 1.19736 1.42889 0.96809 0.88450 0.88743 1.26217 0.93746 0.96139 1.03706 1.69945 1.30894 1.18645 1.33795 0.85062 0.78157 0.78842 0.77492 1.18050 1.20489 1.20413 1.21218 0.80991 0.89992 0.83171 1.90479 1.58066 1.70402 1.32582 1.21366 1.01490 0.93669 0.97949 1.20819 0.98264 0.95290 0.93510 0.92434 1.21643 1.01272 0.94330 0.97831 1.21582 0.99343 0.98949 0.95206 1.22050 0.95605 0.88367 1.01467 1.60235 1.50883 1.04541 1.17205 1.21821 0.96283 0.99074 0.88596 0.92590 0.92983 0.91033 0.92537 0.92136 0.94383 0.92859 0.89267 0.95348 0.91830 0.89247 0.90260 0.90782 0.91853 0.91996 0.89132 0.89109 0.95182 0.83590 0.96402 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.91 71.98 0.71 -3.20 16 2 C -0.12 -3.99 5.93 30.59 0.18 -3.81 16 3 C -0.11 -4.82 5.54 30.59 0.17 -4.65 16 4 C 0.12 5.77 4.96 86.38 0.43 6.20 16 5 N -0.45 -23.44 2.52 -635.54 -1.60 -25.04 16 6 C -0.35 -17.71 8.50 84.04 0.71 -17.00 16 7 H 0.09 4.52 7.30 -2.91 -0.02 4.50 16 8 C 0.00 0.24 5.01 84.93 0.43 0.67 16 9 N -0.90 -47.48 11.35 21.66 0.25 -47.23 16 10 Si 0.98 38.94 29.60 68.60 2.03 40.97 16 11 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 12 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 13 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 14 C 0.46 22.75 7.23 87.66 0.63 23.39 16 15 O -0.63 -33.99 13.86 -3.05 -0.04 -34.03 16 16 C -0.10 -4.24 3.90 29.85 0.12 -4.13 16 17 C -0.06 -2.13 1.99 -10.74 -0.02 -2.16 16 18 H 0.06 2.33 7.86 -2.39 -0.02 2.31 16 19 C -0.11 -3.07 5.29 30.67 0.16 -2.91 16 20 C -0.11 -2.60 6.09 30.64 0.19 -2.41 16 21 C 0.05 1.27 6.55 86.33 0.57 1.84 16 22 N -0.70 -20.96 6.85 -513.99 -3.52 -24.48 16 23 C 0.07 2.63 5.57 86.33 0.48 3.11 16 24 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 25 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 1.93 8.14 -2.38 -0.02 1.92 16 28 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.09 4.73 5.47 -2.39 -0.01 4.72 16 32 H 0.03 1.49 7.50 -2.39 -0.02 1.48 16 33 H 0.27 13.54 8.32 -92.71 -0.77 12.77 16 34 H 0.09 3.36 7.84 -2.39 -0.02 3.34 16 35 H 0.08 3.28 8.01 -2.39 -0.02 3.26 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.35 9.17 8.90 -89.69 -0.80 8.37 16 43 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.05 2.43 6.22 -2.39 -0.01 2.41 16 Total: -1.00 -61.35 343.37 2.03 -59.32 By element: Atomic # 1 Polarization: 35.40 SS G_CDS: 0.16 Total: 35.56 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 4.76 Total: -5.06 kcal Atomic # 7 Polarization: -91.88 SS G_CDS: -4.87 Total: -96.75 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -0.04 Total: -34.03 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -61.35 2.03 -59.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160729557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.918 kcal (2) G-P(sol) polarization free energy of solvation -61.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds