Wall clock time and date at job start Mon Mar 30 2020 01:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46825 * 2 1 4 4 C 1.53005 * 109.46996 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.47025 * 180.02562 * 4 3 2 6 6 C 1.37096 * 119.99467 * 264.53510 * 5 4 3 7 7 H 1.07997 * 119.99736 * 146.14521 * 6 5 4 8 8 C 1.38954 * 120.00288 * 326.14027 * 6 5 4 9 9 N 1.31412 * 119.99899 * 337.69304 * 8 6 5 10 10 Si 1.86797 * 120.00100 * 157.69259 * 8 6 5 11 11 H 1.48490 * 109.47207 * 89.99891 * 10 8 6 12 12 H 1.48501 * 109.47079 * 210.00403 * 10 8 6 13 13 H 1.48498 * 109.47229 * 329.99863 * 10 8 6 14 14 C 1.34767 * 120.00125 * 84.53459 * 5 4 3 15 15 O 1.21294 * 120.00397 * 359.97438 * 14 5 4 16 16 C 1.50698 * 119.99973 * 179.97438 * 14 5 4 17 17 H 1.08993 * 109.45514 * 320.02646 * 16 14 5 18 18 C 1.53035 * 109.46222 * 80.00149 * 16 14 5 19 19 C 1.53119 * 109.28082 * 179.19547 * 18 16 14 20 20 H 1.09000 * 109.52102 * 62.24722 * 19 18 16 21 21 C 1.53000 * 109.52550 * 182.37624 * 19 18 16 22 22 C 1.53117 * 109.16186 * 302.34860 * 19 18 16 23 23 C 1.53034 * 109.28345 * 57.64779 * 22 19 18 24 24 N 1.46850 * 109.52474 * 300.82704 * 23 22 19 25 25 H 1.08995 * 109.47086 * 60.00301 * 1 2 3 26 26 H 1.09004 * 109.46978 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47232 * 299.99789 * 1 2 3 28 28 H 1.08998 * 109.47232 * 240.00211 * 2 1 3 29 29 H 1.08995 * 109.47086 * 119.99699 * 2 1 3 30 30 H 1.08997 * 109.47757 * 60.00311 * 3 2 1 31 31 H 1.09003 * 109.47202 * 299.99417 * 3 2 1 32 32 H 1.08992 * 109.47331 * 59.99545 * 4 3 2 33 33 H 1.09007 * 109.46684 * 299.99172 * 4 3 2 34 34 H 0.96997 * 120.00187 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.50344 * 299.13601 * 18 16 14 36 36 H 1.08996 * 109.50572 * 59.25730 * 18 16 14 37 37 H 1.08997 * 109.47136 * 59.99811 * 21 19 18 38 38 H 1.09001 * 109.46973 * 180.02562 * 21 19 18 39 39 H 1.09001 * 109.46935 * 299.99788 * 21 19 18 40 40 H 1.09004 * 109.50562 * 177.59663 * 22 19 18 41 41 H 1.09007 * 109.49963 * 297.70852 * 22 19 18 42 42 H 1.09005 * 109.45914 * 60.84007 * 23 22 19 43 43 H 1.08996 * 109.46794 * 180.80849 * 23 22 19 44 44 H 1.00893 * 110.99697 * 297.64297 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8239 0.0000 6 6 4.3928 3.4331 -1.1818 7 1 4.2250 4.4922 -1.3096 8 6 4.9479 2.6879 -2.2149 9 7 5.5519 1.5504 -1.9536 10 14 4.8354 3.3029 -3.9751 11 1 6.0183 4.1467 -4.2812 12 1 4.8005 2.1440 -4.9031 13 1 3.5978 4.1067 -4.1405 14 6 4.1786 3.4956 1.1621 15 8 3.8821 2.9567 2.2076 16 6 4.6814 4.9162 1.1628 17 1 5.4926 5.0145 0.4415 18 6 3.5404 5.8611 0.7788 19 6 4.0505 7.3046 0.8003 20 1 4.8417 7.4224 0.0598 21 6 2.8995 8.2586 0.4749 22 6 4.6020 7.6221 2.1930 23 6 5.7121 6.6262 2.5361 24 7 5.1737 5.2604 2.5028 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9330 0.9289 -0.8907 33 1 3.9337 0.9287 0.8893 34 1 5.9396 1.0303 -2.6747 35 1 3.1857 5.6153 -0.2222 36 1 2.7231 5.7534 1.4918 37 1 2.1099 8.1417 1.2172 38 1 3.2637 9.2859 0.4900 39 1 2.5050 8.0279 -0.5146 40 1 5.0056 8.6346 2.2025 41 1 3.8013 7.5421 2.9283 42 1 6.5186 6.7165 1.8083 43 1 6.0971 6.8406 3.5330 44 1 4.4503 5.1400 3.1957 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160731372.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:55 Heat of formation + Delta-G solvation = -60.900294 kcal Electronic energy + Delta-G solvation = -21994.884767 eV Core-core repulsion = 18945.947436 eV Total energy + Delta-G solvation = -3048.937331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.40411 -37.57472 -35.23100 -33.92982 -32.91031 -31.51786 -30.69497 -28.28606 -26.78586 -24.93283 -23.82363 -22.44426 -21.62371 -20.34540 -19.84088 -18.96690 -17.03743 -15.97534 -15.14810 -14.79546 -14.67967 -14.35560 -14.20225 -13.95693 -13.76507 -13.41332 -13.35285 -12.68359 -12.43992 -12.29961 -12.18401 -11.93683 -11.58998 -11.42263 -11.24431 -11.15397 -11.05154 -10.90182 -10.66991 -10.55385 -10.46518 -10.40819 -10.31612 -10.21512 -10.00349 -9.67068 -9.04714 -8.34514 -7.74235 -7.47864 -6.36906 -4.02299 3.09281 3.20222 3.23296 3.90610 4.10339 4.53003 4.90767 4.94009 5.05761 5.13130 5.28277 5.48997 5.50825 5.57099 5.61786 5.68967 5.74929 5.82350 5.85791 6.02348 6.06246 6.09501 6.13144 6.16682 6.26467 6.32561 6.36902 6.42057 6.44895 6.48352 6.54753 6.65056 6.72296 6.77803 6.87733 7.15693 7.37725 7.49520 7.61621 7.93119 7.98604 8.40289 9.09730 9.58242 10.01022 10.64165 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013656 B = 0.007244 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.857484 B = 3864.296036 C = 4803.889064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.127 4.127 4 C 0.116 3.884 5 N -0.437 5.437 6 C -0.340 4.340 7 H 0.092 0.908 8 C 0.044 3.956 9 N -0.854 5.854 10 Si 0.908 3.092 11 H -0.277 1.277 12 H -0.282 1.282 13 H -0.269 1.269 14 C 0.478 3.522 15 O -0.600 6.600 16 C 0.088 3.912 17 H 0.102 0.898 18 C -0.138 4.138 19 C -0.092 4.092 20 H 0.072 0.928 21 C -0.144 4.144 22 C -0.152 4.152 23 C 0.059 3.941 24 N -0.668 5.668 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.106 0.894 33 H 0.050 0.950 34 H 0.269 0.731 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.425 7.173 1.584 8.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.008 4.008 5 N -0.155 5.155 6 C -0.468 4.468 7 H 0.109 0.891 8 C -0.162 4.162 9 N -0.491 5.491 10 Si 0.734 3.266 11 H -0.203 1.203 12 H -0.207 1.207 13 H -0.194 1.194 14 C 0.266 3.734 15 O -0.485 6.485 16 C -0.025 4.025 17 H 0.120 0.880 18 C -0.178 4.178 19 C -0.110 4.110 20 H 0.090 0.910 21 C -0.201 4.201 22 C -0.191 4.191 23 C -0.071 4.071 24 N -0.298 5.298 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.838 6.410 1.881 7.704 hybrid contribution -0.820 0.838 -1.135 1.632 sum -4.657 7.248 0.746 8.647 Atomic orbital electron populations 1.21756 0.96706 1.00635 1.01419 1.21428 0.94901 0.97825 1.01589 1.21904 0.98094 0.95412 1.01188 1.21412 0.90907 0.84977 1.03515 1.43423 1.55298 1.11882 1.04862 1.19454 1.41514 0.95293 0.90532 0.89095 1.25308 0.94285 0.96361 1.00266 1.69955 1.31175 1.14919 1.33028 0.86247 0.78953 0.78622 0.82776 1.20264 1.20707 1.19365 1.20126 0.81300 0.88251 0.83728 1.90498 1.55554 1.70594 1.31883 1.21254 0.97121 0.92985 0.91129 0.88024 1.22202 0.98499 0.93940 1.03117 1.21162 0.97860 0.95017 0.96974 0.91006 1.21808 0.98228 0.98623 1.01454 1.22357 0.99611 0.99988 0.97157 1.22011 0.96551 0.87071 1.01440 1.60372 1.40657 1.22981 1.05815 0.93089 0.93448 0.93124 0.92282 0.92406 0.92952 0.92494 0.87586 0.93165 0.92065 0.90212 0.92474 0.93052 0.93102 0.92614 0.92041 0.92302 0.91142 0.91152 0.83701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.12 -2.05 5.93 -26.73 -0.16 -2.21 16 3 C -0.13 -2.62 5.50 -26.73 -0.15 -2.77 16 4 C 0.12 2.78 4.90 -4.03 -0.02 2.76 16 5 N -0.44 -10.93 2.56 -114.81 -0.29 -11.23 16 6 C -0.34 -8.42 8.19 -14.93 -0.12 -8.55 16 7 H 0.09 2.13 5.54 -52.49 -0.29 1.84 16 8 C 0.04 1.09 4.92 -17.47 -0.09 1.00 16 9 N -0.85 -22.37 11.34 55.50 0.63 -21.74 16 10 Si 0.91 19.12 29.61 -169.99 -5.03 14.08 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 13 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 14 C 0.48 11.73 6.85 -10.99 -0.08 11.65 16 15 O -0.60 -16.05 15.86 5.54 0.09 -15.96 16 16 C 0.09 1.79 2.02 -68.87 -0.14 1.66 16 17 H 0.10 2.21 7.30 -51.93 -0.38 1.83 16 18 C -0.14 -2.40 4.43 -26.65 -0.12 -2.52 16 19 C -0.09 -1.30 2.79 -90.50 -0.25 -1.55 16 20 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 21 C -0.14 -1.76 9.21 37.16 0.34 -1.42 16 22 C -0.15 -1.96 5.37 -26.65 -0.14 -2.10 16 23 C 0.06 0.86 6.55 -3.83 -0.03 0.84 16 24 N -0.67 -12.44 6.28 -107.99 -0.68 -13.12 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.11 2.69 5.35 -51.93 -0.28 2.41 16 33 H 0.05 1.28 7.59 -51.92 -0.39 0.88 16 34 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 35 H 0.08 1.48 6.39 -51.93 -0.33 1.15 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.34 6.46 8.31 -39.30 -0.33 6.14 16 LS Contribution 342.59 15.07 5.16 5.16 Total: -1.00 -27.91 342.59 -8.60 -36.51 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -7.90 Total: 11.25 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -0.58 Total: -4.96 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: -0.34 Total: -46.09 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.09 Total: -15.96 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.91 -8.60 -36.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160731372.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.388 kcal (2) G-P(sol) polarization free energy of solvation -27.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds