Wall clock time and date at job start Mon Mar 30 2020 01:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46825 * 2 1 4 4 C 1.53005 * 109.46996 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.47025 * 180.02562 * 4 3 2 6 6 C 1.37096 * 119.99467 * 264.53510 * 5 4 3 7 7 H 1.07997 * 119.99736 * 146.14521 * 6 5 4 8 8 C 1.38954 * 120.00288 * 326.14027 * 6 5 4 9 9 N 1.31412 * 119.99899 * 337.69304 * 8 6 5 10 10 Si 1.86797 * 120.00100 * 157.69259 * 8 6 5 11 11 H 1.48490 * 109.47207 * 89.99891 * 10 8 6 12 12 H 1.48501 * 109.47079 * 210.00403 * 10 8 6 13 13 H 1.48498 * 109.47229 * 329.99863 * 10 8 6 14 14 C 1.34767 * 120.00125 * 84.53459 * 5 4 3 15 15 O 1.21294 * 120.00397 * 359.97438 * 14 5 4 16 16 C 1.50698 * 119.99973 * 179.97438 * 14 5 4 17 17 H 1.08993 * 109.45514 * 320.02646 * 16 14 5 18 18 C 1.53035 * 109.46222 * 80.00149 * 16 14 5 19 19 C 1.53119 * 109.28082 * 179.19547 * 18 16 14 20 20 H 1.09000 * 109.52102 * 62.24722 * 19 18 16 21 21 C 1.53000 * 109.52550 * 182.37624 * 19 18 16 22 22 C 1.53117 * 109.16186 * 302.34860 * 19 18 16 23 23 C 1.53034 * 109.28345 * 57.64779 * 22 19 18 24 24 N 1.46850 * 109.52474 * 300.82704 * 23 22 19 25 25 H 1.08995 * 109.47086 * 60.00301 * 1 2 3 26 26 H 1.09004 * 109.46978 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47232 * 299.99789 * 1 2 3 28 28 H 1.08998 * 109.47232 * 240.00211 * 2 1 3 29 29 H 1.08995 * 109.47086 * 119.99699 * 2 1 3 30 30 H 1.08997 * 109.47757 * 60.00311 * 3 2 1 31 31 H 1.09003 * 109.47202 * 299.99417 * 3 2 1 32 32 H 1.08992 * 109.47331 * 59.99545 * 4 3 2 33 33 H 1.09007 * 109.46684 * 299.99172 * 4 3 2 34 34 H 0.96997 * 120.00187 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.50344 * 299.13601 * 18 16 14 36 36 H 1.08996 * 109.50572 * 59.25730 * 18 16 14 37 37 H 1.08997 * 109.47136 * 59.99811 * 21 19 18 38 38 H 1.09001 * 109.46973 * 180.02562 * 21 19 18 39 39 H 1.09001 * 109.46935 * 299.99788 * 21 19 18 40 40 H 1.09004 * 109.50562 * 177.59663 * 22 19 18 41 41 H 1.09007 * 109.49963 * 297.70852 * 22 19 18 42 42 H 1.09005 * 109.45914 * 60.84007 * 23 22 19 43 43 H 1.08996 * 109.46794 * 180.80849 * 23 22 19 44 44 H 1.00893 * 110.99697 * 297.64297 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8239 0.0000 6 6 4.3928 3.4331 -1.1818 7 1 4.2250 4.4922 -1.3096 8 6 4.9479 2.6879 -2.2149 9 7 5.5519 1.5504 -1.9536 10 14 4.8354 3.3029 -3.9751 11 1 6.0183 4.1467 -4.2812 12 1 4.8005 2.1440 -4.9031 13 1 3.5978 4.1067 -4.1405 14 6 4.1786 3.4956 1.1621 15 8 3.8821 2.9567 2.2076 16 6 4.6814 4.9162 1.1628 17 1 5.4926 5.0145 0.4415 18 6 3.5404 5.8611 0.7788 19 6 4.0505 7.3046 0.8003 20 1 4.8417 7.4224 0.0598 21 6 2.8995 8.2586 0.4749 22 6 4.6020 7.6221 2.1930 23 6 5.7121 6.6262 2.5361 24 7 5.1737 5.2604 2.5028 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9330 0.9289 -0.8907 33 1 3.9337 0.9287 0.8893 34 1 5.9396 1.0303 -2.6747 35 1 3.1857 5.6153 -0.2222 36 1 2.7231 5.7534 1.4918 37 1 2.1099 8.1417 1.2172 38 1 3.2637 9.2859 0.4900 39 1 2.5050 8.0279 -0.5146 40 1 5.0056 8.6346 2.2025 41 1 3.8013 7.5421 2.9283 42 1 6.5186 6.7165 1.8083 43 1 6.0971 6.8406 3.5330 44 1 4.4503 5.1400 3.1957 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160731372.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:55 Heat of formation + Delta-G solvation = -77.205702 kcal Electronic energy + Delta-G solvation = -21995.591822 eV Core-core repulsion = 18945.947436 eV Total energy + Delta-G solvation = -3049.644387 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.06858 -39.14564 -37.06291 -35.57544 -34.18551 -33.44080 -32.11640 -29.85643 -27.95318 -26.86140 -25.36910 -23.78542 -23.03585 -21.94363 -21.07961 -20.87233 -18.80224 -17.83199 -16.63647 -16.61389 -16.20969 -15.90171 -15.73894 -15.28296 -15.20926 -14.91432 -14.73511 -14.13500 -13.89278 -13.76951 -13.61749 -13.54756 -13.07853 -12.99479 -12.77513 -12.51422 -12.34466 -12.29094 -12.20335 -12.10312 -12.00761 -11.95365 -11.79279 -11.59282 -11.43577 -11.30357 -10.93698 -10.21931 -9.45824 -9.17611 -8.28863 -6.00743 1.40740 1.47966 1.58837 2.03278 2.32083 2.86297 3.07877 3.55579 3.80243 3.85896 4.01617 4.07089 4.18295 4.24138 4.30198 4.40065 4.44042 4.51190 4.59005 4.71219 4.81257 4.83112 4.87274 4.88591 4.91253 4.99059 5.01118 5.06885 5.10392 5.13006 5.17425 5.20020 5.35230 5.35895 5.42345 5.47594 5.49638 5.58166 6.02366 6.14954 6.46013 6.52029 7.14730 7.63902 8.07075 8.73608 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013656 B = 0.007244 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.857484 B = 3864.296036 C = 4803.889064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.113 4.113 4 C 0.116 3.884 5 N -0.447 5.447 6 C -0.353 4.353 7 H 0.102 0.898 8 C 0.003 3.997 9 N -0.890 5.890 10 Si 0.977 3.023 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.259 1.259 14 C 0.461 3.539 15 O -0.631 6.631 16 C 0.099 3.901 17 H 0.085 0.915 18 C -0.127 4.127 19 C -0.089 4.089 20 H 0.071 0.929 21 C -0.139 4.139 22 C -0.143 4.143 23 C 0.057 3.943 24 N -0.685 5.685 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.037 0.963 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.024 0.976 34 H 0.271 0.729 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.198 9.128 0.781 10.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.152 4.152 4 C -0.008 4.008 5 N -0.165 5.165 6 C -0.480 4.480 7 H 0.119 0.881 8 C -0.201 4.201 9 N -0.527 5.527 10 Si 0.800 3.200 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.183 1.183 14 C 0.250 3.750 15 O -0.519 6.519 16 C -0.014 4.014 17 H 0.103 0.897 18 C -0.167 4.167 19 C -0.107 4.107 20 H 0.089 0.911 21 C -0.196 4.196 22 C -0.182 4.182 23 C -0.072 4.072 24 N -0.316 5.316 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.042 0.958 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.110 0.890 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.610 8.385 1.074 9.629 hybrid contribution -0.506 0.181 -0.820 0.980 sum -5.116 8.565 0.254 9.980 Atomic orbital electron populations 1.21705 0.94027 1.02383 1.01773 1.21412 0.97206 0.95148 1.01651 1.21752 0.95399 0.97778 1.00222 1.21379 0.93223 0.84742 1.01430 1.43704 1.55248 1.12092 1.05427 1.19802 1.41705 0.95963 0.90566 0.88087 1.26167 0.93504 0.96399 1.03979 1.70062 1.32087 1.16271 1.34300 0.85191 0.79280 0.78066 0.77463 1.19687 1.20691 1.18334 1.20963 0.80881 0.90006 0.83128 1.90454 1.56960 1.71727 1.32786 1.21032 0.97317 0.91007 0.91998 0.89700 1.22094 0.97117 0.95732 1.01771 1.21164 0.98645 0.92900 0.98021 0.91101 1.21764 0.97381 0.99160 1.01318 1.22276 0.98951 1.00835 0.96109 1.22146 0.96952 0.85317 1.02754 1.60341 1.40523 1.26121 1.04606 0.92490 0.91017 0.93037 0.91991 0.92625 0.94405 0.92666 0.88846 0.95776 0.91879 0.91687 0.93121 0.92841 0.90850 0.92907 0.89108 0.92012 0.91319 0.89040 0.84018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.91 71.98 0.71 -3.13 16 2 C -0.12 -3.97 5.93 30.59 0.18 -3.79 16 3 C -0.11 -4.77 5.50 30.60 0.17 -4.61 16 4 C 0.12 5.85 4.90 86.38 0.42 6.27 16 5 N -0.45 -23.23 2.56 -635.53 -1.63 -24.86 16 6 C -0.35 -17.79 8.19 84.04 0.69 -17.10 16 7 H 0.10 4.78 5.54 -2.91 -0.02 4.76 16 8 C 0.00 0.13 4.92 84.93 0.42 0.55 16 9 N -0.89 -47.58 11.34 21.66 0.25 -47.33 16 10 Si 0.98 38.91 29.61 68.60 2.03 40.95 16 11 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 12 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 13 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 14 C 0.46 23.49 6.85 87.66 0.60 24.09 16 15 O -0.63 -35.27 15.86 -3.07 -0.05 -35.31 16 16 C 0.10 4.13 2.02 44.19 0.09 4.22 16 17 H 0.09 3.79 7.30 -2.39 -0.02 3.77 16 18 C -0.13 -4.42 4.43 30.65 0.14 -4.28 16 19 C -0.09 -2.33 2.79 -10.71 -0.03 -2.36 16 20 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 21 C -0.14 -3.00 9.21 71.98 0.66 -2.34 16 22 C -0.14 -3.28 5.37 30.64 0.16 -3.11 16 23 C 0.06 1.57 6.55 86.32 0.57 2.13 16 24 N -0.69 -25.57 6.28 -495.56 -3.11 -28.69 16 25 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.09 4.95 5.35 -2.39 -0.01 4.93 16 33 H 0.02 1.29 7.59 -2.38 -0.02 1.28 16 34 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 35 H 0.06 2.42 6.39 -2.38 -0.02 2.40 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 41 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 43 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.34 12.94 8.31 -89.70 -0.75 12.19 16 Total: -1.00 -61.95 342.59 2.48 -59.46 By element: Atomic # 1 Polarization: 39.04 SS G_CDS: 0.21 Total: 39.25 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 4.78 Total: -3.47 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -4.49 Total: -100.88 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.05 Total: -35.31 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.95 kcal Total: -61.95 2.48 -59.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160731372.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.744 kcal (2) G-P(sol) polarization free energy of solvation -61.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds