Wall clock time and date at job start Mon Mar 30 2020 01:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46817 * 2 1 4 4 C 1.52999 * 109.46817 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47009 * 180.02562 * 4 3 2 6 6 C 1.37099 * 119.99926 * 264.48558 * 5 4 3 7 7 H 1.07998 * 120.00144 * 149.02428 * 6 5 4 8 8 C 1.38946 * 119.99876 * 329.02217 * 6 5 4 9 9 N 1.31416 * 120.00447 * 335.29147 * 8 6 5 10 10 Si 1.86803 * 120.00052 * 155.29231 * 8 6 5 11 11 H 1.48504 * 109.46958 * 89.99702 * 10 8 6 12 12 H 1.48495 * 109.47121 * 209.99991 * 10 8 6 13 13 H 1.48500 * 109.47082 * 330.00049 * 10 8 6 14 14 C 1.34775 * 120.00132 * 84.48267 * 5 4 3 15 15 O 1.21290 * 119.99920 * 359.97438 * 14 5 4 16 16 C 1.50699 * 120.00090 * 180.02562 * 14 5 4 17 17 H 1.08999 * 109.45453 * 55.51089 * 16 14 5 18 18 C 1.53035 * 109.46381 * 295.53949 * 16 14 5 19 19 C 1.53123 * 109.27770 * 299.16356 * 18 16 14 20 20 H 1.09007 * 109.52350 * 62.31318 * 19 18 16 21 21 C 1.52993 * 109.52684 * 182.44011 * 19 18 16 22 22 C 1.53122 * 109.16043 * 302.34764 * 19 18 16 23 23 C 1.53030 * 109.27929 * 57.65099 * 22 19 18 24 24 N 1.46849 * 109.46155 * 175.48336 * 16 14 5 25 25 H 1.08997 * 109.47026 * 299.99797 * 1 2 3 26 26 H 1.08997 * 109.47642 * 59.99778 * 1 2 3 27 27 H 1.08998 * 109.47026 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47026 * 240.00203 * 2 1 3 29 29 H 1.08999 * 109.47101 * 119.99692 * 2 1 3 30 30 H 1.08997 * 109.47157 * 60.00283 * 3 2 1 31 31 H 1.08991 * 109.47278 * 300.00026 * 3 2 1 32 32 H 1.08997 * 109.47026 * 60.00203 * 4 3 2 33 33 H 1.09004 * 109.47525 * 299.99851 * 4 3 2 34 34 H 0.96995 * 120.00246 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.50703 * 179.22632 * 18 16 14 36 36 H 1.08999 * 109.50177 * 59.09898 * 18 16 14 37 37 H 1.09001 * 109.47297 * 59.99963 * 21 19 18 38 38 H 1.09005 * 109.47243 * 300.00424 * 21 19 18 39 39 H 1.08996 * 109.47558 * 179.97438 * 21 19 18 40 40 H 1.09000 * 109.50394 * 177.59696 * 22 19 18 41 41 H 1.09002 * 109.49975 * 297.70978 * 22 19 18 42 42 H 1.09006 * 109.46440 * 180.80939 * 23 22 19 43 43 H 1.08994 * 109.46717 * 60.84106 * 23 22 19 44 44 H 1.00899 * 110.99658 * 182.36706 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0582 2.8238 0.0013 6 6 4.3948 3.4324 -1.1802 7 1 4.2706 4.4993 -1.2927 8 6 4.8957 2.6766 -2.2330 9 7 5.4970 1.5329 -1.9932 10 14 4.7144 3.2860 -3.9895 11 1 5.8930 4.1144 -4.3501 12 1 4.6257 2.1241 -4.9099 13 1 3.4805 4.1041 -4.1048 14 6 4.1766 3.4962 1.1633 15 8 3.8783 2.9580 2.2085 16 6 4.6783 4.9172 1.1638 17 1 4.0570 5.5219 0.5032 18 6 6.1265 4.9469 0.6701 19 6 6.9990 4.1128 1.6123 20 1 6.6652 3.0752 1.5949 21 6 8.4582 4.1881 1.1588 22 6 6.8758 4.6675 3.0342 23 6 5.4059 4.6460 3.4593 24 7 4.6135 5.4585 2.5274 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9336 0.9287 -0.8891 33 1 3.9330 0.9289 0.8909 34 1 5.8463 1.0051 -2.7282 35 1 6.4857 5.9759 0.6572 36 1 6.1765 4.5306 -0.3360 37 1 8.7919 5.2256 1.1786 38 1 8.5441 3.7982 0.1445 39 1 9.0786 3.5945 1.8303 40 1 7.4612 4.0518 3.7170 41 1 7.2468 5.6922 3.0584 42 1 5.3129 5.0538 4.4660 43 1 5.0395 3.6196 3.4482 44 1 4.9084 6.4232 2.5479 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160731374.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:58 Heat of formation + Delta-G solvation = -49.318287 kcal Electronic energy + Delta-G solvation = -22512.762320 eV Core-core repulsion = 19464.327222 eV Total energy + Delta-G solvation = -3048.435098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.65259 -37.15065 -35.14772 -33.98976 -32.65626 -31.58843 -30.47973 -28.23976 -26.53007 -24.98723 -23.71235 -22.17436 -21.59377 -20.35283 -19.93098 -18.83155 -16.62368 -16.02494 -15.04808 -14.80232 -14.54498 -14.35990 -14.07080 -13.71485 -13.48208 -13.31177 -13.16663 -12.79331 -12.39678 -12.17995 -12.05195 -11.67048 -11.57252 -11.36227 -11.29861 -11.12798 -11.01721 -10.75868 -10.57710 -10.46860 -10.38255 -10.24565 -10.08196 -9.96198 -9.72868 -9.59855 -9.01381 -8.15755 -7.64738 -7.46104 -6.40078 -4.00512 3.07389 3.19406 3.23417 3.93093 4.08598 4.62489 4.95836 5.04182 5.32216 5.36796 5.51794 5.55166 5.58996 5.69574 5.78595 5.97005 6.02026 6.03571 6.11801 6.13436 6.27103 6.27450 6.31803 6.35236 6.41305 6.45515 6.51514 6.61209 6.65451 6.72554 6.78099 6.88621 6.90951 6.96957 7.06172 7.17149 7.35708 7.49602 7.67348 7.91244 8.06198 8.38347 9.07871 9.57084 10.00010 10.59530 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014135 B = 0.008595 C = 0.006130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.412720 B = 3256.847246 C = 4566.281809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.114 3.886 5 N -0.437 5.437 6 C -0.335 4.335 7 H 0.090 0.910 8 C 0.044 3.956 9 N -0.852 5.852 10 Si 0.904 3.096 11 H -0.277 1.277 12 H -0.282 1.282 13 H -0.269 1.269 14 C 0.480 3.520 15 O -0.590 6.590 16 C 0.087 3.913 17 H 0.089 0.911 18 C -0.141 4.141 19 C -0.087 4.087 20 H 0.074 0.926 21 C -0.140 4.140 22 C -0.148 4.148 23 C 0.035 3.965 24 N -0.667 5.667 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.109 0.891 33 H 0.048 0.952 34 H 0.269 0.731 35 H 0.048 0.952 36 H 0.104 0.896 37 H 0.044 0.956 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.056 0.944 43 H 0.120 0.880 44 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.215 2.814 2.087 3.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.167 4.167 4 C -0.010 4.010 5 N -0.155 5.155 6 C -0.462 4.462 7 H 0.108 0.892 8 C -0.162 4.162 9 N -0.489 5.489 10 Si 0.730 3.270 11 H -0.203 1.203 12 H -0.207 1.207 13 H -0.193 1.193 14 C 0.269 3.731 15 O -0.476 6.476 16 C -0.026 4.026 17 H 0.107 0.893 18 C -0.181 4.181 19 C -0.105 4.105 20 H 0.093 0.907 21 C -0.197 4.197 22 C -0.187 4.187 23 C -0.094 4.094 24 N -0.295 5.295 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.127 0.873 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.123 0.877 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.137 0.863 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.448 2.053 2.623 3.361 hybrid contribution 0.991 0.638 -1.340 1.784 sum 0.543 2.692 1.283 3.031 Atomic orbital electron populations 1.21754 0.96687 1.00608 1.01481 1.21423 0.94941 0.97837 1.01488 1.21901 0.98040 0.95376 1.01345 1.21446 0.91058 0.84889 1.03566 1.43462 1.55242 1.11931 1.04898 1.19340 1.42910 0.94253 0.89712 0.89249 1.25196 0.94630 0.96335 1.00011 1.69952 1.31830 1.14455 1.32622 0.86310 0.79082 0.78653 0.82958 1.20323 1.20735 1.19336 1.20013 0.81301 0.88170 0.83611 1.90358 1.55323 1.70504 1.31415 1.21201 0.96054 0.95666 0.89691 0.89279 1.22268 0.94275 0.98870 1.02646 1.21049 0.94907 1.00648 0.93937 0.90741 1.21764 0.96178 1.00453 1.01301 1.22320 0.99289 0.99874 0.97214 1.22522 0.89546 1.03098 0.94214 1.60370 1.57803 1.04701 1.06607 0.93059 0.93084 0.93486 0.92356 0.92472 0.92789 0.92487 0.87326 0.93329 0.92082 0.93356 0.87745 0.93664 0.92413 0.93551 0.92576 0.93361 0.92598 0.86261 0.85555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.12 -2.03 5.93 -26.73 -0.16 -2.19 16 3 C -0.13 -2.63 5.50 -26.73 -0.15 -2.78 16 4 C 0.11 2.68 4.91 -4.04 -0.02 2.66 16 5 N -0.44 -10.58 2.58 -114.81 -0.30 -10.87 16 6 C -0.33 -8.01 6.71 -14.93 -0.10 -8.11 16 7 H 0.09 2.07 6.55 -52.49 -0.34 1.72 16 8 C 0.04 1.06 4.89 -17.47 -0.09 0.97 16 9 N -0.85 -21.37 11.29 55.50 0.63 -20.74 16 10 Si 0.90 18.73 29.62 -169.99 -5.03 13.69 16 11 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 12 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 13 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 14 C 0.48 11.40 5.61 -10.99 -0.06 11.34 16 15 O -0.59 -15.20 13.18 5.55 0.07 -15.13 16 16 C 0.09 1.75 2.71 -68.87 -0.19 1.56 16 17 H 0.09 1.77 7.40 -51.93 -0.38 1.39 16 18 C -0.14 -2.66 4.63 -26.65 -0.12 -2.79 16 19 C -0.09 -1.61 2.54 -90.50 -0.23 -1.84 16 20 H 0.07 1.66 7.32 -51.92 -0.38 1.28 16 21 C -0.14 -2.26 9.20 37.15 0.34 -1.92 16 22 C -0.15 -2.44 5.36 -26.65 -0.14 -2.58 16 23 C 0.04 0.64 6.15 -3.84 -0.02 0.62 16 24 N -0.67 -12.33 6.52 -107.99 -0.70 -13.03 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.11 2.69 5.23 -51.93 -0.27 2.41 16 33 H 0.05 1.20 7.59 -51.93 -0.39 0.80 16 34 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 2.22 5.73 -51.93 -0.30 1.93 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.12 2.62 5.02 -51.93 -0.26 2.36 16 44 H 0.33 5.15 8.86 -39.29 -0.35 4.80 16 LS Contribution 334.57 15.07 5.04 5.04 Total: -1.00 -26.38 334.57 -8.60 -34.97 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -7.73 Total: 12.89 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -0.57 Total: -6.83 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: -0.37 Total: -44.64 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.07 Total: -15.13 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.38 -8.60 -34.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160731374.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.346 kcal (2) G-P(sol) polarization free energy of solvation -26.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds