Wall clock time and date at job start Mon Mar 30 2020 01:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46817 * 2 1 4 4 C 1.52999 * 109.46817 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47009 * 180.02562 * 4 3 2 6 6 C 1.37099 * 119.99926 * 264.48558 * 5 4 3 7 7 H 1.07998 * 120.00144 * 149.02428 * 6 5 4 8 8 C 1.38946 * 119.99876 * 329.02217 * 6 5 4 9 9 N 1.31416 * 120.00447 * 335.29147 * 8 6 5 10 10 Si 1.86803 * 120.00052 * 155.29231 * 8 6 5 11 11 H 1.48504 * 109.46958 * 89.99702 * 10 8 6 12 12 H 1.48495 * 109.47121 * 209.99991 * 10 8 6 13 13 H 1.48500 * 109.47082 * 330.00049 * 10 8 6 14 14 C 1.34775 * 120.00132 * 84.48267 * 5 4 3 15 15 O 1.21290 * 119.99920 * 359.97438 * 14 5 4 16 16 C 1.50699 * 120.00090 * 180.02562 * 14 5 4 17 17 H 1.08999 * 109.45453 * 55.51089 * 16 14 5 18 18 C 1.53035 * 109.46381 * 295.53949 * 16 14 5 19 19 C 1.53123 * 109.27770 * 299.16356 * 18 16 14 20 20 H 1.09007 * 109.52350 * 62.31318 * 19 18 16 21 21 C 1.52993 * 109.52684 * 182.44011 * 19 18 16 22 22 C 1.53122 * 109.16043 * 302.34764 * 19 18 16 23 23 C 1.53030 * 109.27929 * 57.65099 * 22 19 18 24 24 N 1.46849 * 109.46155 * 175.48336 * 16 14 5 25 25 H 1.08997 * 109.47026 * 299.99797 * 1 2 3 26 26 H 1.08997 * 109.47642 * 59.99778 * 1 2 3 27 27 H 1.08998 * 109.47026 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47026 * 240.00203 * 2 1 3 29 29 H 1.08999 * 109.47101 * 119.99692 * 2 1 3 30 30 H 1.08997 * 109.47157 * 60.00283 * 3 2 1 31 31 H 1.08991 * 109.47278 * 300.00026 * 3 2 1 32 32 H 1.08997 * 109.47026 * 60.00203 * 4 3 2 33 33 H 1.09004 * 109.47525 * 299.99851 * 4 3 2 34 34 H 0.96995 * 120.00246 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.50703 * 179.22632 * 18 16 14 36 36 H 1.08999 * 109.50177 * 59.09898 * 18 16 14 37 37 H 1.09001 * 109.47297 * 59.99963 * 21 19 18 38 38 H 1.09005 * 109.47243 * 300.00424 * 21 19 18 39 39 H 1.08996 * 109.47558 * 179.97438 * 21 19 18 40 40 H 1.09000 * 109.50394 * 177.59696 * 22 19 18 41 41 H 1.09002 * 109.49975 * 297.70978 * 22 19 18 42 42 H 1.09006 * 109.46440 * 180.80939 * 23 22 19 43 43 H 1.08994 * 109.46717 * 60.84106 * 23 22 19 44 44 H 1.00899 * 110.99658 * 182.36706 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0582 2.8238 0.0013 6 6 4.3948 3.4324 -1.1802 7 1 4.2706 4.4993 -1.2927 8 6 4.8957 2.6766 -2.2330 9 7 5.4970 1.5329 -1.9932 10 14 4.7144 3.2860 -3.9895 11 1 5.8930 4.1144 -4.3501 12 1 4.6257 2.1241 -4.9099 13 1 3.4805 4.1041 -4.1048 14 6 4.1766 3.4962 1.1633 15 8 3.8783 2.9580 2.2085 16 6 4.6783 4.9172 1.1638 17 1 4.0570 5.5219 0.5032 18 6 6.1265 4.9469 0.6701 19 6 6.9990 4.1128 1.6123 20 1 6.6652 3.0752 1.5949 21 6 8.4582 4.1881 1.1588 22 6 6.8758 4.6675 3.0342 23 6 5.4059 4.6460 3.4593 24 7 4.6135 5.4585 2.5274 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9336 0.9287 -0.8891 33 1 3.9330 0.9289 0.8909 34 1 5.8463 1.0051 -2.7282 35 1 6.4857 5.9759 0.6572 36 1 6.1765 4.5306 -0.3360 37 1 8.7919 5.2256 1.1786 38 1 8.5441 3.7982 0.1445 39 1 9.0786 3.5945 1.8303 40 1 7.4612 4.0518 3.7170 41 1 7.2468 5.6922 3.0584 42 1 5.3129 5.0538 4.4660 43 1 5.0395 3.6196 3.4482 44 1 4.9084 6.4232 2.5479 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160731374.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:57 Heat of formation + Delta-G solvation = -64.609903 kcal Electronic energy + Delta-G solvation = -22513.425414 eV Core-core repulsion = 19464.327222 eV Total energy + Delta-G solvation = -3049.098192 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.34870 -38.81821 -36.94910 -35.58984 -34.13894 -33.44447 -32.01113 -29.81957 -27.93328 -26.85254 -25.30823 -23.67740 -23.12337 -21.93598 -21.51284 -20.63510 -18.44482 -17.71021 -16.74694 -16.46710 -16.17516 -16.05073 -15.68786 -15.20715 -14.99334 -14.84035 -14.66243 -14.35156 -13.97921 -13.74171 -13.59869 -13.19011 -13.12644 -12.96698 -12.86482 -12.72534 -12.56190 -12.20485 -12.13391 -12.04532 -11.95081 -11.84274 -11.68627 -11.49583 -11.41787 -11.14938 -10.82272 -9.94564 -9.42618 -9.09379 -8.25243 -5.91312 1.41430 1.50198 1.59861 2.10606 2.34055 2.92930 3.12771 3.52741 3.87701 3.92768 4.07131 4.11634 4.15007 4.30492 4.33362 4.42591 4.52313 4.57566 4.66439 4.75785 4.81071 4.84874 4.88015 4.91205 4.96440 4.99885 5.06424 5.10044 5.16388 5.18743 5.32766 5.36279 5.37459 5.43219 5.43560 5.48890 5.59044 5.60908 6.03837 6.16239 6.49944 6.73168 7.20178 7.70125 8.13806 8.75516 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014135 B = 0.008595 C = 0.006130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.412720 B = 3256.847246 C = 4566.281809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.114 4.114 4 C 0.117 3.883 5 N -0.448 5.448 6 C -0.343 4.343 7 H 0.097 0.903 8 C 0.008 3.992 9 N -0.884 5.884 10 Si 0.968 3.032 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.263 1.263 14 C 0.467 3.533 15 O -0.619 6.619 16 C 0.092 3.908 17 H 0.093 0.907 18 C -0.132 4.132 19 C -0.087 4.087 20 H 0.022 0.978 21 C -0.132 4.132 22 C -0.137 4.137 23 C 0.037 3.963 24 N -0.671 5.671 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.022 0.978 34 H 0.270 0.730 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.039 0.961 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.404 4.604 1.718 4.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.153 4.153 4 C -0.007 4.007 5 N -0.166 5.166 6 C -0.470 4.470 7 H 0.115 0.885 8 C -0.195 4.195 9 N -0.521 5.521 10 Si 0.792 3.208 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.188 1.188 14 C 0.257 3.743 15 O -0.506 6.506 16 C -0.021 4.021 17 H 0.111 0.889 18 C -0.172 4.172 19 C -0.106 4.106 20 H 0.040 0.960 21 C -0.190 4.190 22 C -0.176 4.176 23 C -0.092 4.092 24 N -0.301 5.301 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.257 3.863 2.256 4.481 hybrid contribution 0.958 0.046 -1.153 1.500 sum 0.701 3.909 1.103 4.122 Atomic orbital electron populations 1.21705 0.94130 1.02340 1.01750 1.21404 0.97143 0.95216 1.01576 1.21758 0.95746 0.97647 1.00153 1.21375 0.92995 0.84832 1.01527 1.43708 1.55367 1.12068 1.05475 1.19584 1.42965 0.94715 0.89725 0.88508 1.25929 0.93974 0.96388 1.03223 1.70052 1.32768 1.15708 1.33622 0.85324 0.79191 0.78002 0.78287 1.19690 1.20974 1.18762 1.20738 0.80805 0.89752 0.82996 1.90352 1.56386 1.71640 1.32259 1.21098 0.96765 0.93200 0.91002 0.88888 1.22166 0.93558 1.00472 1.00987 1.20999 0.96231 0.97687 0.95649 0.95957 1.21693 0.94627 1.02267 1.00368 1.22219 0.98183 1.01567 0.95610 1.22375 0.90499 1.00900 0.95449 1.60270 1.58503 1.05877 1.05470 0.93083 0.92540 0.91032 0.92023 0.92663 0.94524 0.92798 0.88536 0.95906 0.92021 0.90074 0.90478 0.90953 0.94175 0.92495 0.91697 0.90332 0.90228 0.90510 0.83163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.91 71.98 0.71 -3.20 16 2 C -0.12 -3.96 5.93 30.60 0.18 -3.78 16 3 C -0.11 -4.85 5.50 30.60 0.17 -4.68 16 4 C 0.12 5.75 4.91 86.38 0.42 6.18 16 5 N -0.45 -22.54 2.58 -635.55 -1.64 -24.17 16 6 C -0.34 -16.67 6.71 84.04 0.56 -16.10 16 7 H 0.10 4.48 6.55 -2.91 -0.02 4.46 16 8 C 0.01 0.39 4.89 84.92 0.42 0.80 16 9 N -0.88 -45.54 11.29 21.66 0.24 -45.30 16 10 Si 0.97 38.23 29.62 68.60 2.03 40.26 16 11 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 12 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 13 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 14 C 0.47 22.94 5.61 87.66 0.49 23.43 16 15 O -0.62 -33.40 13.18 -3.06 -0.04 -33.44 16 16 C 0.09 3.70 2.71 44.19 0.12 3.82 16 17 H 0.09 3.63 7.40 -2.39 -0.02 3.61 16 18 C -0.13 -4.87 4.63 30.65 0.14 -4.72 16 19 C -0.09 -3.17 2.54 -10.71 -0.03 -3.20 16 20 H 0.02 1.03 7.32 -2.38 -0.02 1.01 16 21 C -0.13 -4.08 9.20 71.98 0.66 -3.42 16 22 C -0.14 -4.22 5.36 30.65 0.16 -4.06 16 23 C 0.04 1.31 6.15 86.32 0.53 1.84 16 24 N -0.67 -23.83 6.52 -495.57 -3.23 -27.06 16 25 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.10 5.01 5.23 -2.39 -0.01 5.00 16 33 H 0.02 1.20 7.59 -2.39 -0.02 1.18 16 34 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 35 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.08 3.29 5.73 -2.39 -0.01 3.27 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 38 H 0.04 1.35 8.14 -2.38 -0.02 1.34 16 39 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 43 H 0.08 3.47 5.02 -2.39 -0.01 3.46 16 44 H 0.35 9.89 8.86 -89.69 -0.79 9.09 16 Total: -1.00 -59.36 334.57 2.09 -57.27 By element: Atomic # 1 Polarization: 39.37 SS G_CDS: 0.17 Total: 39.54 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 4.55 Total: -7.10 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -4.62 Total: -96.53 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -0.04 Total: -33.44 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 2.03 Total: 40.26 kcal Total: -59.36 2.09 -57.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160731374.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.342 kcal (2) G-P(sol) polarization free energy of solvation -59.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds