Wall clock time and date at job start Mon Mar 30 2020 01:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47191 * 2 1 4 4 C 1.53005 * 109.47068 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47044 * 179.97438 * 4 3 2 6 6 C 1.37103 * 119.99697 * 269.99983 * 5 4 3 7 7 H 1.07997 * 119.99621 * 146.84094 * 6 5 4 8 8 C 1.38955 * 119.99968 * 326.83173 * 6 5 4 9 9 N 1.31410 * 119.99933 * 334.75014 * 8 6 5 10 10 Si 1.86796 * 119.99809 * 154.74718 * 8 6 5 11 11 H 1.48500 * 109.47031 * 90.00224 * 10 8 6 12 12 H 1.48496 * 109.47433 * 210.00150 * 10 8 6 13 13 H 1.48505 * 109.47223 * 330.00328 * 10 8 6 14 14 C 1.34768 * 120.00066 * 89.99925 * 5 4 3 15 15 O 1.21296 * 119.99893 * 5.71298 * 14 5 4 16 16 C 1.50699 * 119.99984 * 185.71394 * 14 5 4 17 17 H 1.09001 * 109.46114 * 309.49273 * 16 14 5 18 18 C 1.53163 * 109.44184 * 69.43748 * 16 14 5 19 19 C 1.53120 * 109.20784 * 60.87660 * 18 16 14 20 20 H 1.09000 * 109.52547 * 297.69506 * 19 18 16 21 21 C 1.53008 * 109.52386 * 177.56363 * 19 18 16 22 22 C 1.53126 * 109.20950 * 57.63095 * 19 18 16 23 23 C 1.53037 * 109.27775 * 302.31285 * 22 19 18 24 24 N 1.46842 * 109.52352 * 59.17796 * 23 22 19 25 25 H 1.09004 * 109.47167 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47072 * 300.00183 * 1 2 3 27 27 H 1.08997 * 109.47093 * 59.99975 * 1 2 3 28 28 H 1.08997 * 109.47094 * 239.99111 * 2 1 3 29 29 H 1.09004 * 109.47026 * 119.99684 * 2 1 3 30 30 H 1.08995 * 109.47315 * 59.99620 * 3 2 1 31 31 H 1.09000 * 109.46955 * 299.99269 * 3 2 1 32 32 H 1.09003 * 109.47161 * 59.99837 * 4 3 2 33 33 H 1.09004 * 109.47059 * 299.99629 * 4 3 2 34 34 H 0.97006 * 119.99655 * 185.61723 * 9 8 6 35 35 H 1.08999 * 109.58765 * 300.93234 * 18 16 14 36 36 H 1.08998 * 109.49634 * 180.77269 * 18 16 14 37 37 H 1.09003 * 109.46829 * 300.13162 * 21 19 18 38 38 H 1.09003 * 109.46647 * 60.13198 * 21 19 18 39 39 H 1.08996 * 109.46775 * 180.12972 * 21 19 18 40 40 H 1.08997 * 109.50228 * 62.25704 * 22 19 18 41 41 H 1.09001 * 109.49974 * 182.36743 * 22 19 18 42 42 H 1.08994 * 109.46117 * 179.19541 * 23 22 19 43 43 H 1.09001 * 109.46176 * 299.17443 * 23 22 19 44 44 H 1.00907 * 111.00044 * 62.35650 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8237 -0.0013 6 6 4.2864 3.4696 -1.1889 7 1 4.1200 4.5339 -1.2653 8 6 4.7316 2.7548 -2.2942 9 7 5.3947 1.6326 -2.1274 10 14 4.3874 3.3890 -4.0172 11 1 5.4999 4.2718 -4.4511 12 1 4.2719 2.2419 -4.9531 13 1 3.1167 4.1577 -4.0171 14 6 4.2835 3.4593 1.1656 15 8 4.1818 2.8573 2.2136 16 6 4.6614 4.9182 1.1682 17 1 5.4879 5.0804 0.4763 18 6 3.4575 5.7575 0.7302 19 6 2.3069 5.5415 1.7172 20 1 2.0043 4.4945 1.7004 21 6 1.1209 6.4232 1.3209 22 6 2.7748 5.9164 3.1262 23 6 3.9977 5.0728 3.4937 24 7 5.0711 5.3150 2.5214 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9562 -0.8901 32 1 3.9330 0.9287 -0.8909 33 1 3.9337 0.9285 0.8892 34 1 5.7759 1.1760 -2.8937 35 1 3.1429 5.4523 -0.2678 36 1 3.7339 6.8118 0.7186 37 1 1.4246 7.4699 1.3380 38 1 0.7900 6.1571 0.3169 39 1 0.3033 6.2704 2.0253 40 1 3.0405 6.9731 3.1523 41 1 1.9728 5.7246 3.8390 42 1 4.3419 5.3473 4.4907 43 1 3.7276 4.0168 3.4807 44 1 5.3663 6.2797 2.5415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160731375.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:00 Heat of formation + Delta-G solvation = -46.380006 kcal Electronic energy + Delta-G solvation = -22572.620980 eV Core-core repulsion = 19524.313296 eV Total energy + Delta-G solvation = -3048.307684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.71202 -37.18087 -35.18692 -33.96854 -32.78125 -31.61066 -30.53953 -28.26626 -26.69447 -24.98581 -23.75250 -22.25616 -21.64297 -20.46950 -19.96373 -18.85317 -16.68810 -16.07587 -15.11450 -14.78224 -14.58168 -14.36912 -14.17586 -13.79070 -13.61007 -13.40561 -13.25453 -12.87964 -12.38736 -12.21800 -12.00675 -11.86720 -11.73076 -11.52781 -11.39564 -11.15077 -10.88773 -10.83866 -10.64009 -10.53216 -10.46476 -10.36692 -10.13713 -9.98418 -9.75193 -9.64315 -9.03644 -8.14898 -7.60272 -7.45303 -6.38468 -3.99650 3.07961 3.19601 3.22576 3.91270 4.09846 4.61923 4.92661 5.02930 5.15905 5.22146 5.38688 5.47979 5.52966 5.65230 5.67992 5.84353 5.91505 5.92867 5.97511 6.07350 6.11637 6.22166 6.24199 6.27237 6.35074 6.38738 6.45234 6.48106 6.58369 6.59697 6.65499 6.73968 6.75097 6.83970 6.99198 7.15184 7.38151 7.51510 7.66629 7.95564 8.07727 8.40325 9.10082 9.58326 10.01542 10.62964 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013656 B = 0.008367 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.858755 B = 3345.825839 C = 4144.522808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.125 4.125 4 C 0.110 3.890 5 N -0.436 5.436 6 C -0.348 4.348 7 H 0.095 0.905 8 C 0.047 3.953 9 N -0.853 5.853 10 Si 0.906 3.094 11 H -0.277 1.277 12 H -0.282 1.282 13 H -0.269 1.269 14 C 0.484 3.516 15 O -0.591 6.591 16 C 0.085 3.915 17 H 0.100 0.900 18 C -0.143 4.143 19 C -0.091 4.091 20 H 0.072 0.928 21 C -0.142 4.142 22 C -0.146 4.146 23 C 0.028 3.972 24 N -0.665 5.665 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.054 0.946 34 H 0.270 0.730 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.128 0.872 44 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.588 4.921 2.559 8.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.163 4.163 4 C -0.013 4.013 5 N -0.154 5.154 6 C -0.475 4.475 7 H 0.113 0.887 8 C -0.160 4.160 9 N -0.490 5.490 10 Si 0.733 3.267 11 H -0.203 1.203 12 H -0.207 1.207 13 H -0.193 1.193 14 C 0.272 3.728 15 O -0.477 6.477 16 C -0.028 4.028 17 H 0.118 0.882 18 C -0.182 4.182 19 C -0.110 4.110 20 H 0.091 0.909 21 C -0.200 4.200 22 C -0.185 4.185 23 C -0.101 4.101 24 N -0.293 5.293 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.145 0.855 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.262 3.802 3.056 7.938 hybrid contribution -0.713 1.192 -1.317 1.914 sum -6.975 4.994 1.738 8.753 Atomic orbital electron populations 1.21755 0.96684 1.00664 1.01419 1.21432 0.94916 0.97821 1.01624 1.21879 0.98003 0.95348 1.01099 1.21445 0.91035 0.85126 1.03718 1.43403 1.55609 1.11966 1.04390 1.19525 1.46659 0.94487 0.86832 0.88716 1.25295 0.94663 0.96000 1.00019 1.69889 1.29532 1.17925 1.31615 0.86263 0.79306 0.78626 0.82540 1.20268 1.20723 1.19319 1.19996 0.80081 0.88653 0.84039 1.90303 1.57820 1.68006 1.31554 1.21261 0.97238 0.93955 0.90383 0.88175 1.22326 0.96007 0.99057 1.00811 1.21121 0.94928 1.00269 0.94665 0.90915 1.21807 0.97797 0.99288 1.01065 1.22290 0.99993 0.99469 0.96749 1.22684 0.88646 1.04797 0.93971 1.60339 1.38361 1.25313 1.05254 0.93430 0.93149 0.93063 0.92232 0.92423 0.93311 0.92322 0.87609 0.92785 0.91952 0.89512 0.92580 0.93298 0.92742 0.93267 0.93294 0.92471 0.92599 0.85513 0.85527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.12 -2.01 5.93 -26.73 -0.16 -2.17 16 3 C -0.12 -2.50 5.54 -26.73 -0.15 -2.65 16 4 C 0.11 2.60 5.06 -4.04 -0.02 2.58 16 5 N -0.44 -10.65 2.55 -114.80 -0.29 -10.94 16 6 C -0.35 -8.47 8.15 -14.93 -0.12 -8.59 16 7 H 0.10 2.18 5.07 -52.49 -0.27 1.92 16 8 C 0.05 1.15 4.90 -17.47 -0.09 1.06 16 9 N -0.85 -22.16 11.40 55.50 0.63 -21.53 16 10 Si 0.91 18.96 29.63 -169.99 -5.04 13.92 16 11 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 13 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 14 C 0.48 11.54 5.62 -10.99 -0.06 11.48 16 15 O -0.59 -15.25 12.90 5.54 0.07 -15.17 16 16 C 0.08 1.71 2.69 -68.81 -0.18 1.52 16 17 H 0.10 2.10 7.65 -51.93 -0.40 1.71 16 18 C -0.14 -2.49 4.60 -26.59 -0.12 -2.61 16 19 C -0.09 -1.52 2.54 -90.49 -0.23 -1.74 16 20 H 0.07 1.42 7.31 -51.93 -0.38 1.04 16 21 C -0.14 -1.98 9.20 37.16 0.34 -1.64 16 22 C -0.15 -2.25 5.36 -26.65 -0.14 -2.39 16 23 C 0.03 0.50 6.16 -3.84 -0.02 0.47 16 24 N -0.66 -12.32 6.55 -107.92 -0.71 -13.03 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.11 2.66 5.36 -51.93 -0.28 2.38 16 33 H 0.05 1.34 7.35 -51.93 -0.38 0.96 16 34 H 0.27 6.63 8.32 -40.82 -0.34 6.29 16 35 H 0.09 1.63 5.66 -51.93 -0.29 1.34 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.13 2.72 4.85 -52.19 -0.25 2.47 16 44 H 0.33 5.14 8.86 -39.29 -0.35 4.80 16 LS Contribution 334.45 15.07 5.04 5.04 Total: -1.00 -27.21 334.45 -8.53 -35.74 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -7.65 Total: 12.37 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -0.59 Total: -6.39 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.37 Total: -45.50 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.07 Total: -15.17 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.04 Total: 13.92 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.21 -8.53 -35.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160731375.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.640 kcal (2) G-P(sol) polarization free energy of solvation -27.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds