Wall clock time and date at job start Mon Mar 30 2020 01:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47191 * 2 1 4 4 C 1.53005 * 109.47068 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47044 * 179.97438 * 4 3 2 6 6 C 1.37103 * 119.99697 * 269.99983 * 5 4 3 7 7 H 1.07997 * 119.99621 * 146.84094 * 6 5 4 8 8 C 1.38955 * 119.99968 * 326.83173 * 6 5 4 9 9 N 1.31410 * 119.99933 * 334.75014 * 8 6 5 10 10 Si 1.86796 * 119.99809 * 154.74718 * 8 6 5 11 11 H 1.48500 * 109.47031 * 90.00224 * 10 8 6 12 12 H 1.48496 * 109.47433 * 210.00150 * 10 8 6 13 13 H 1.48505 * 109.47223 * 330.00328 * 10 8 6 14 14 C 1.34768 * 120.00066 * 89.99925 * 5 4 3 15 15 O 1.21296 * 119.99893 * 5.71298 * 14 5 4 16 16 C 1.50699 * 119.99984 * 185.71394 * 14 5 4 17 17 H 1.09001 * 109.46114 * 309.49273 * 16 14 5 18 18 C 1.53163 * 109.44184 * 69.43748 * 16 14 5 19 19 C 1.53120 * 109.20784 * 60.87660 * 18 16 14 20 20 H 1.09000 * 109.52547 * 297.69506 * 19 18 16 21 21 C 1.53008 * 109.52386 * 177.56363 * 19 18 16 22 22 C 1.53126 * 109.20950 * 57.63095 * 19 18 16 23 23 C 1.53037 * 109.27775 * 302.31285 * 22 19 18 24 24 N 1.46842 * 109.52352 * 59.17796 * 23 22 19 25 25 H 1.09004 * 109.47167 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47072 * 300.00183 * 1 2 3 27 27 H 1.08997 * 109.47093 * 59.99975 * 1 2 3 28 28 H 1.08997 * 109.47094 * 239.99111 * 2 1 3 29 29 H 1.09004 * 109.47026 * 119.99684 * 2 1 3 30 30 H 1.08995 * 109.47315 * 59.99620 * 3 2 1 31 31 H 1.09000 * 109.46955 * 299.99269 * 3 2 1 32 32 H 1.09003 * 109.47161 * 59.99837 * 4 3 2 33 33 H 1.09004 * 109.47059 * 299.99629 * 4 3 2 34 34 H 0.97006 * 119.99655 * 185.61723 * 9 8 6 35 35 H 1.08999 * 109.58765 * 300.93234 * 18 16 14 36 36 H 1.08998 * 109.49634 * 180.77269 * 18 16 14 37 37 H 1.09003 * 109.46829 * 300.13162 * 21 19 18 38 38 H 1.09003 * 109.46647 * 60.13198 * 21 19 18 39 39 H 1.08996 * 109.46775 * 180.12972 * 21 19 18 40 40 H 1.08997 * 109.50228 * 62.25704 * 22 19 18 41 41 H 1.09001 * 109.49974 * 182.36743 * 22 19 18 42 42 H 1.08994 * 109.46117 * 179.19541 * 23 22 19 43 43 H 1.09001 * 109.46176 * 299.17443 * 23 22 19 44 44 H 1.00907 * 111.00044 * 62.35650 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8237 -0.0013 6 6 4.2864 3.4696 -1.1889 7 1 4.1200 4.5339 -1.2653 8 6 4.7316 2.7548 -2.2942 9 7 5.3947 1.6326 -2.1274 10 14 4.3874 3.3890 -4.0172 11 1 5.4999 4.2718 -4.4511 12 1 4.2719 2.2419 -4.9531 13 1 3.1167 4.1577 -4.0171 14 6 4.2835 3.4593 1.1656 15 8 4.1818 2.8573 2.2136 16 6 4.6614 4.9182 1.1682 17 1 5.4879 5.0804 0.4763 18 6 3.4575 5.7575 0.7302 19 6 2.3069 5.5415 1.7172 20 1 2.0043 4.4945 1.7004 21 6 1.1209 6.4232 1.3209 22 6 2.7748 5.9164 3.1262 23 6 3.9977 5.0728 3.4937 24 7 5.0711 5.3150 2.5214 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9562 -0.8901 32 1 3.9330 0.9287 -0.8909 33 1 3.9337 0.9285 0.8892 34 1 5.7759 1.1760 -2.8937 35 1 3.1429 5.4523 -0.2678 36 1 3.7339 6.8118 0.7186 37 1 1.4246 7.4699 1.3380 38 1 0.7900 6.1571 0.3169 39 1 0.3033 6.2704 2.0253 40 1 3.0405 6.9731 3.1523 41 1 1.9728 5.7246 3.8390 42 1 4.3419 5.3473 4.4907 43 1 3.7276 4.0168 3.4807 44 1 5.3663 6.2797 2.5415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160731375.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:00 Heat of formation + Delta-G solvation = -62.408544 kcal Electronic energy + Delta-G solvation = -22573.316030 eV Core-core repulsion = 19524.313296 eV Total energy + Delta-G solvation = -3049.002734 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.37301 -38.81481 -36.96272 -35.57172 -34.16848 -33.47683 -32.02798 -29.82469 -27.96055 -26.87351 -25.30295 -23.71012 -23.12214 -21.98904 -21.47037 -20.65694 -18.51100 -17.72430 -16.82266 -16.36567 -16.19428 -16.03195 -15.77559 -15.23711 -15.09512 -14.79132 -14.69170 -14.34173 -13.91294 -13.79005 -13.61398 -13.40020 -13.09817 -13.02324 -12.84650 -12.71133 -12.38800 -12.26206 -12.14207 -12.09009 -11.95512 -11.94584 -11.60896 -11.51640 -11.43113 -11.10401 -10.87784 -9.90186 -9.39458 -9.08493 -8.26957 -5.93912 1.40872 1.49078 1.59152 2.08676 2.33644 2.91970 3.10642 3.53296 3.84817 3.88848 4.02956 4.07110 4.15657 4.27674 4.31210 4.41356 4.53294 4.55894 4.68882 4.77695 4.79452 4.81898 4.87624 4.91922 4.94650 4.98916 5.00964 5.08393 5.11482 5.17122 5.24506 5.32394 5.35618 5.38897 5.42776 5.50741 5.57924 5.63333 6.08895 6.17269 6.50625 6.73395 7.19737 7.69962 8.13819 8.75824 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013656 B = 0.008367 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.858755 B = 3345.825839 C = 4144.522808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C -0.109 4.109 4 C 0.112 3.888 5 N -0.448 5.448 6 C -0.358 4.358 7 H 0.108 0.892 8 C 0.004 3.996 9 N -0.891 5.891 10 Si 0.973 3.027 11 H -0.271 1.271 12 H -0.285 1.285 13 H -0.259 1.259 14 C 0.470 3.530 15 O -0.619 6.619 16 C 0.090 3.910 17 H 0.089 0.911 18 C -0.133 4.133 19 C -0.091 4.091 20 H 0.032 0.968 21 C -0.135 4.135 22 C -0.136 4.136 23 C 0.029 3.971 24 N -0.675 5.675 25 H 0.070 0.930 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.028 0.972 34 H 0.271 0.729 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.969 7.067 2.117 10.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C -0.147 4.147 4 C -0.012 4.012 5 N -0.166 5.166 6 C -0.485 4.485 7 H 0.125 0.875 8 C -0.199 4.199 9 N -0.528 5.528 10 Si 0.797 3.203 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.183 1.183 14 C 0.260 3.740 15 O -0.507 6.507 16 C -0.023 4.023 17 H 0.107 0.893 18 C -0.173 4.173 19 C -0.110 4.110 20 H 0.051 0.949 21 C -0.192 4.192 22 C -0.175 4.175 23 C -0.100 4.100 24 N -0.306 5.306 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.046 0.954 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.649 5.971 2.620 10.051 hybrid contribution -0.209 0.475 -1.088 1.205 sum -7.858 6.446 1.532 10.278 Atomic orbital electron populations 1.21702 0.94027 1.02357 1.01783 1.21418 0.97203 0.95290 1.01590 1.21710 0.95323 0.97545 1.00156 1.21381 0.93323 0.84985 1.01486 1.43665 1.55832 1.12121 1.04949 1.19905 1.46482 0.95220 0.86892 0.87491 1.26125 0.94079 0.96160 1.03513 1.70004 1.30755 1.19414 1.32645 0.85231 0.79470 0.77950 0.77629 1.19640 1.21010 1.18281 1.20748 0.79427 0.90353 0.83426 1.90308 1.58816 1.69172 1.32387 1.21119 0.97989 0.91843 0.91327 0.89314 1.22248 0.95030 0.99992 1.00020 1.21085 0.95757 0.98691 0.95418 0.94899 1.21738 0.96768 0.99656 1.01053 1.22194 0.99016 1.00285 0.95997 1.22522 0.89734 1.02940 0.94765 1.60230 1.39051 1.26898 1.04408 0.91084 0.92926 0.92568 0.92196 0.92575 0.94436 0.92763 0.89184 0.95357 0.91902 0.91066 0.89523 0.91209 0.93172 0.92141 0.90612 0.91357 0.90702 0.89588 0.83276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.91 71.98 0.71 -3.07 16 2 C -0.12 -3.95 5.93 30.59 0.18 -3.77 16 3 C -0.11 -4.50 5.54 30.60 0.17 -4.33 16 4 C 0.11 5.56 5.06 86.38 0.44 6.00 16 5 N -0.45 -22.72 2.55 -635.52 -1.62 -24.34 16 6 C -0.36 -17.70 8.15 84.04 0.69 -17.01 16 7 H 0.11 4.92 5.07 -2.91 -0.01 4.91 16 8 C 0.00 0.22 4.90 84.93 0.42 0.64 16 9 N -0.89 -47.46 11.40 21.66 0.25 -47.21 16 10 Si 0.97 38.67 29.63 68.60 2.03 40.70 16 11 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 12 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 13 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 14 C 0.47 23.25 5.62 87.66 0.49 23.75 16 15 O -0.62 -33.53 12.90 -3.08 -0.04 -33.57 16 16 C 0.09 3.64 2.69 44.23 0.12 3.76 16 17 H 0.09 3.75 7.65 -2.39 -0.02 3.73 16 18 C -0.13 -4.47 4.60 30.69 0.14 -4.33 16 19 C -0.09 -2.88 2.54 -10.71 -0.03 -2.91 16 20 H 0.03 1.30 7.31 -2.39 -0.02 1.28 16 21 C -0.13 -3.36 9.20 71.98 0.66 -2.70 16 22 C -0.14 -3.86 5.36 30.65 0.16 -3.69 16 23 C 0.03 1.02 6.16 86.33 0.53 1.55 16 24 N -0.68 -24.44 6.55 -495.35 -3.25 -27.69 16 25 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.09 4.76 5.36 -2.39 -0.01 4.75 16 33 H 0.03 1.50 7.35 -2.38 -0.02 1.48 16 34 H 0.27 13.62 8.32 -92.70 -0.77 12.85 16 35 H 0.07 2.61 5.66 -2.39 -0.01 2.60 16 36 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.09 3.79 4.85 -6.48 -0.03 3.76 16 44 H 0.35 10.12 8.86 -89.69 -0.79 9.32 16 Total: -1.00 -61.00 334.45 2.22 -58.78 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: 0.16 Total: 39.46 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 4.69 Total: -6.14 kcal Atomic # 7 Polarization: -94.62 SS G_CDS: -4.62 Total: -99.24 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -0.04 Total: -33.57 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -61.00 2.22 -58.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160731375.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.627 kcal (2) G-P(sol) polarization free energy of solvation -61.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds