Wall clock time and date at job start Mon Mar 30 2020 01:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46903 * 2 1 4 4 C 1.52999 * 109.47096 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47287 * 179.97438 * 4 3 2 6 6 C 1.37097 * 120.00242 * 277.08354 * 5 4 3 7 7 H 1.07998 * 119.99982 * 40.47183 * 6 5 4 8 8 C 1.38951 * 120.00049 * 220.47647 * 6 5 4 9 9 N 1.31411 * 119.99919 * 35.52898 * 8 6 5 10 10 Si 1.86798 * 120.00162 * 215.53235 * 8 6 5 11 11 H 1.48501 * 109.47525 * 89.99502 * 10 8 6 12 12 H 1.48498 * 109.47268 * 210.00062 * 10 8 6 13 13 H 1.48507 * 109.46826 * 329.99881 * 10 8 6 14 14 C 1.34783 * 119.99643 * 97.08148 * 5 4 3 15 15 O 1.21298 * 119.99570 * 186.26889 * 14 5 4 16 16 C 1.50692 * 120.00013 * 6.26752 * 14 5 4 17 17 H 1.09001 * 109.53735 * 4.93370 * 16 14 5 18 18 C 1.53120 * 109.50288 * 125.02912 * 16 14 5 19 19 C 1.53121 * 109.16290 * 177.59479 * 18 16 14 20 20 C 1.53043 * 109.27592 * 302.34519 * 19 18 16 21 21 N 1.46841 * 109.52227 * 59.17953 * 20 19 18 22 22 C 1.46845 * 111.19869 * 298.25602 * 21 20 19 23 23 H 1.08996 * 109.46350 * 301.73519 * 22 21 20 24 24 C 1.52999 * 109.46435 * 181.75766 * 22 21 20 25 25 H 1.08997 * 109.47365 * 299.99827 * 1 2 3 26 26 H 1.09001 * 109.47430 * 59.99754 * 1 2 3 27 27 H 1.08994 * 109.46892 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47365 * 240.00173 * 2 1 3 29 29 H 1.08998 * 109.46978 * 119.99651 * 2 1 3 30 30 H 1.09005 * 109.47001 * 60.00586 * 3 2 1 31 31 H 1.08993 * 109.47348 * 299.99991 * 3 2 1 32 32 H 1.09007 * 109.46867 * 60.00273 * 4 3 2 33 33 H 1.09001 * 109.47610 * 300.00474 * 4 3 2 34 34 H 0.97001 * 119.99797 * 184.94118 * 9 8 6 35 35 H 1.09009 * 109.52260 * 57.68960 * 18 16 14 36 36 H 1.08997 * 109.52659 * 297.49825 * 18 16 14 37 37 H 1.08998 * 109.50173 * 182.40795 * 19 18 16 38 38 H 1.08998 * 109.50228 * 62.28748 * 19 18 16 39 39 H 1.09004 * 109.45653 * 179.19237 * 20 19 18 40 40 H 1.08998 * 109.46307 * 299.17397 * 20 19 18 41 41 H 1.00893 * 111.00139 * 174.15866 * 21 20 19 42 42 H 1.09006 * 109.46878 * 59.99949 * 24 22 21 43 43 H 1.08999 * 109.47295 * 179.97438 * 24 22 21 44 44 H 1.09002 * 109.47216 * 299.99847 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.1492 3.5182 -1.1786 7 1 3.3704 3.4261 -1.9211 8 6 5.2435 4.3405 -1.4178 9 7 6.4329 3.9958 -0.9782 10 14 5.0237 5.9360 -2.3641 11 1 4.7184 7.0366 -1.4150 12 1 6.2739 6.2505 -3.1013 13 1 3.9040 5.7892 -3.3286 14 6 4.4181 3.4118 1.1582 15 8 4.7136 4.5882 1.1749 16 6 4.4531 2.6079 2.4323 17 1 4.2443 1.5617 2.2090 18 6 5.8383 2.7270 3.0739 19 6 5.8470 1.9571 4.3975 20 6 4.7521 2.5116 5.3118 21 7 3.4468 2.3740 4.6534 22 6 3.3987 3.1435 3.4036 23 1 3.6004 4.1935 3.6156 24 6 2.0107 3.0080 2.7745 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.9336 0.9287 -0.8892 33 1 3.9330 0.9289 0.8908 34 1 7.1828 4.6023 -1.0820 35 1 6.0637 3.7769 3.2618 36 1 6.5878 2.3069 2.4033 37 1 6.8175 2.0736 4.8798 38 1 5.6601 0.9006 4.2051 39 1 4.7463 1.9559 6.2495 40 1 4.9472 3.5646 5.5147 41 1 2.6986 2.6448 5.2737 42 1 1.2596 3.3903 3.4659 43 1 1.9747 3.5794 1.8471 44 1 1.8087 1.9580 2.5628 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160732018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:43 Heat of formation + Delta-G solvation = -43.220248 kcal Electronic energy + Delta-G solvation = -22583.495407 eV Core-core repulsion = 19535.324740 eV Total energy + Delta-G solvation = -3048.170667 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.49300 -37.24616 -35.40583 -33.43936 -32.41263 -32.03804 -31.06392 -28.15504 -26.98191 -25.04119 -23.43870 -22.65822 -21.54906 -20.52374 -20.05445 -18.39215 -17.00902 -15.84402 -15.32586 -15.07513 -14.66330 -14.53148 -14.08399 -13.92558 -13.66620 -13.52986 -13.01827 -12.71669 -12.56474 -12.40201 -12.01063 -11.92654 -11.57628 -11.50548 -11.35583 -11.00090 -10.92728 -10.77892 -10.71629 -10.52068 -10.42755 -10.40077 -10.13031 -9.88798 -9.83275 -9.72006 -8.53105 -8.22415 -7.99216 -7.17887 -6.18320 -3.74963 3.38353 3.46577 3.52975 4.15820 4.28115 4.49387 4.96310 5.16188 5.20462 5.26934 5.31305 5.32074 5.40302 5.51039 5.57311 5.67145 5.70692 5.84918 5.86395 5.95793 6.00224 6.08576 6.14930 6.17349 6.21542 6.24857 6.27634 6.31908 6.35881 6.42302 6.51455 6.55439 6.58544 6.74343 6.81297 6.87416 7.02896 7.27872 7.59557 7.68867 8.28313 9.08987 9.24020 9.71518 10.33371 10.88475 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013235 B = 0.008954 C = 0.006130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.086389 B = 3126.462767 C = 4566.266651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.149 4.149 4 C 0.101 3.899 5 N -0.447 5.447 6 C -0.362 4.362 7 H 0.078 0.922 8 C 0.093 3.907 9 N -0.825 5.825 10 Si 0.891 3.109 11 H -0.276 1.276 12 H -0.291 1.291 13 H -0.274 1.274 14 C 0.488 3.512 15 O -0.559 6.559 16 C -0.098 4.098 17 H 0.087 0.913 18 C -0.104 4.104 19 C -0.115 4.115 20 C 0.059 3.941 21 N -0.686 5.686 22 C 0.102 3.898 23 H 0.043 0.957 24 C -0.151 4.151 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.263 0.737 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.027 0.973 41 H 0.337 0.663 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.562 -7.189 8.810 13.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.187 4.187 4 C -0.024 4.024 5 N -0.168 5.168 6 C -0.487 4.487 7 H 0.096 0.904 8 C -0.118 4.118 9 N -0.458 5.458 10 Si 0.718 3.282 11 H -0.202 1.202 12 H -0.218 1.218 13 H -0.199 1.199 14 C 0.276 3.724 15 O -0.440 6.440 16 C -0.120 4.120 17 H 0.105 0.895 18 C -0.142 4.142 19 C -0.153 4.153 20 C -0.070 4.070 21 N -0.317 5.317 22 C -0.008 4.008 23 H 0.061 0.939 24 C -0.208 4.208 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.154 0.846 42 H 0.066 0.934 43 H 0.090 0.910 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.019 -7.172 8.427 12.597 hybrid contribution 0.010 1.634 -0.108 1.637 sum -6.009 -5.538 8.319 11.661 Atomic orbital electron populations 1.21752 0.96474 1.00795 1.01634 1.21468 0.95266 0.97651 1.01560 1.22326 0.97305 0.95833 1.03270 1.21639 0.92941 0.86799 1.00976 1.43345 1.58782 1.09118 1.05521 1.18809 1.05160 1.28435 0.96338 0.90416 1.24990 0.93169 0.98581 0.95073 1.70113 0.99036 1.33442 1.43211 0.86563 0.77303 0.85274 0.79087 1.20161 1.21758 1.19882 1.19718 0.81689 0.87373 0.83647 1.90488 1.51267 1.16635 1.85600 1.21375 0.95292 1.00954 0.94427 0.89511 1.21403 0.96338 1.00852 0.95576 1.21602 0.97307 1.00436 0.95969 1.21889 0.89867 0.98614 0.96636 1.60339 1.04388 1.60318 1.06680 1.21249 0.95267 0.94997 0.89288 0.93907 1.22092 0.95120 1.02623 1.00975 0.92975 0.92971 0.93383 0.92346 0.92344 0.90771 0.91896 0.91989 0.92190 0.92651 0.91677 0.91519 0.91933 0.91433 0.91306 0.95461 0.84564 0.93385 0.91008 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.38 16 2 C -0.12 -1.62 5.93 -26.73 -0.16 -1.78 16 3 C -0.15 -2.49 5.49 -26.73 -0.15 -2.64 16 4 C 0.10 2.00 5.37 -4.04 -0.02 1.98 16 5 N -0.45 -11.11 2.55 -114.81 -0.29 -11.41 16 6 C -0.36 -10.08 9.06 -14.93 -0.14 -10.21 16 7 H 0.08 2.11 8.03 -52.49 -0.42 1.69 16 8 C 0.09 2.68 3.79 -17.47 -0.07 2.61 16 9 N -0.83 -24.53 12.96 55.50 0.72 -23.82 16 10 Si 0.89 22.54 29.67 -169.99 -5.04 17.50 16 11 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 14 C 0.49 12.19 4.60 -10.99 -0.05 12.14 16 15 O -0.56 -16.40 15.09 5.54 0.08 -16.32 16 16 C -0.10 -1.95 1.92 -91.69 -0.18 -2.12 16 17 H 0.09 1.65 5.18 -51.93 -0.27 1.38 16 18 C -0.10 -1.97 5.18 -26.61 -0.14 -2.10 16 19 C -0.12 -1.68 6.09 -26.65 -0.16 -1.84 16 20 C 0.06 0.79 6.55 -3.83 -0.03 0.76 16 21 N -0.69 -9.63 6.50 -106.76 -0.69 -10.33 16 22 C 0.10 1.75 2.52 -67.72 -0.17 1.58 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 24 C -0.15 -2.40 7.83 37.16 0.29 -2.11 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.23 3.61 -51.93 -0.19 1.04 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.26 8.10 -51.92 -0.42 0.84 16 33 H 0.06 1.11 5.29 -51.93 -0.27 0.83 16 34 H 0.26 7.54 8.32 -40.82 -0.34 7.20 16 35 H 0.06 1.36 7.96 -51.92 -0.41 0.94 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.34 4.00 8.79 -39.30 -0.35 3.65 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 1.34 6.53 -51.93 -0.34 1.00 16 44 H 0.07 1.04 6.58 -51.93 -0.34 0.70 16 LS Contribution 336.58 15.07 5.07 5.07 Total: -1.00 -32.05 336.58 -8.39 -40.44 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.64 Total: 3.97 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -0.59 Total: -5.11 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -0.27 Total: -45.55 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.08 Total: -16.32 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.04 Total: 17.50 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.05 -8.39 -40.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160732018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.782 kcal (2) G-P(sol) polarization free energy of solvation -32.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds