Wall clock time and date at job start Mon Mar 30 2020 01:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46903 * 2 1 4 4 C 1.52999 * 109.47096 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47287 * 179.97438 * 4 3 2 6 6 C 1.37097 * 120.00242 * 277.08354 * 5 4 3 7 7 H 1.07998 * 119.99982 * 40.47183 * 6 5 4 8 8 C 1.38951 * 120.00049 * 220.47647 * 6 5 4 9 9 N 1.31411 * 119.99919 * 35.52898 * 8 6 5 10 10 Si 1.86798 * 120.00162 * 215.53235 * 8 6 5 11 11 H 1.48501 * 109.47525 * 89.99502 * 10 8 6 12 12 H 1.48498 * 109.47268 * 210.00062 * 10 8 6 13 13 H 1.48507 * 109.46826 * 329.99881 * 10 8 6 14 14 C 1.34783 * 119.99643 * 97.08148 * 5 4 3 15 15 O 1.21298 * 119.99570 * 186.26889 * 14 5 4 16 16 C 1.50692 * 120.00013 * 6.26752 * 14 5 4 17 17 H 1.09001 * 109.53735 * 4.93370 * 16 14 5 18 18 C 1.53120 * 109.50288 * 125.02912 * 16 14 5 19 19 C 1.53121 * 109.16290 * 177.59479 * 18 16 14 20 20 C 1.53043 * 109.27592 * 302.34519 * 19 18 16 21 21 N 1.46841 * 109.52227 * 59.17953 * 20 19 18 22 22 C 1.46845 * 111.19869 * 298.25602 * 21 20 19 23 23 H 1.08996 * 109.46350 * 301.73519 * 22 21 20 24 24 C 1.52999 * 109.46435 * 181.75766 * 22 21 20 25 25 H 1.08997 * 109.47365 * 299.99827 * 1 2 3 26 26 H 1.09001 * 109.47430 * 59.99754 * 1 2 3 27 27 H 1.08994 * 109.46892 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47365 * 240.00173 * 2 1 3 29 29 H 1.08998 * 109.46978 * 119.99651 * 2 1 3 30 30 H 1.09005 * 109.47001 * 60.00586 * 3 2 1 31 31 H 1.08993 * 109.47348 * 299.99991 * 3 2 1 32 32 H 1.09007 * 109.46867 * 60.00273 * 4 3 2 33 33 H 1.09001 * 109.47610 * 300.00474 * 4 3 2 34 34 H 0.97001 * 119.99797 * 184.94118 * 9 8 6 35 35 H 1.09009 * 109.52260 * 57.68960 * 18 16 14 36 36 H 1.08997 * 109.52659 * 297.49825 * 18 16 14 37 37 H 1.08998 * 109.50173 * 182.40795 * 19 18 16 38 38 H 1.08998 * 109.50228 * 62.28748 * 19 18 16 39 39 H 1.09004 * 109.45653 * 179.19237 * 20 19 18 40 40 H 1.08998 * 109.46307 * 299.17397 * 20 19 18 41 41 H 1.00893 * 111.00139 * 174.15866 * 21 20 19 42 42 H 1.09006 * 109.46878 * 59.99949 * 24 22 21 43 43 H 1.08999 * 109.47295 * 179.97438 * 24 22 21 44 44 H 1.09002 * 109.47216 * 299.99847 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.1492 3.5182 -1.1786 7 1 3.3704 3.4261 -1.9211 8 6 5.2435 4.3405 -1.4178 9 7 6.4329 3.9958 -0.9782 10 14 5.0237 5.9360 -2.3641 11 1 4.7184 7.0366 -1.4150 12 1 6.2739 6.2505 -3.1013 13 1 3.9040 5.7892 -3.3286 14 6 4.4181 3.4118 1.1582 15 8 4.7136 4.5882 1.1749 16 6 4.4531 2.6079 2.4323 17 1 4.2443 1.5617 2.2090 18 6 5.8383 2.7270 3.0739 19 6 5.8470 1.9571 4.3975 20 6 4.7521 2.5116 5.3118 21 7 3.4468 2.3740 4.6534 22 6 3.3987 3.1435 3.4036 23 1 3.6004 4.1935 3.6156 24 6 2.0107 3.0080 2.7745 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.9336 0.9287 -0.8892 33 1 3.9330 0.9289 0.8908 34 1 7.1828 4.6023 -1.0820 35 1 6.0637 3.7769 3.2618 36 1 6.5878 2.3069 2.4033 37 1 6.8175 2.0736 4.8798 38 1 5.6601 0.9006 4.2051 39 1 4.7463 1.9559 6.2495 40 1 4.9472 3.5646 5.5147 41 1 2.6986 2.6448 5.2737 42 1 1.2596 3.3903 3.4659 43 1 1.9747 3.5794 1.8471 44 1 1.8087 1.9580 2.5628 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160732018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:42 Heat of formation + Delta-G solvation = -64.522982 kcal Electronic energy + Delta-G solvation = -22584.419163 eV Core-core repulsion = 19535.324740 eV Total energy + Delta-G solvation = -3049.094423 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.16626 -38.80799 -37.03348 -35.19339 -33.83832 -33.70114 -32.65349 -29.60575 -28.40520 -26.86715 -24.93266 -24.13933 -22.91064 -21.79928 -21.60290 -20.08260 -18.82208 -17.59462 -16.90857 -16.76581 -16.23630 -15.91065 -15.69984 -15.58286 -15.03638 -14.86044 -14.49374 -14.28226 -14.00919 -13.79764 -13.62103 -13.26701 -13.19826 -12.97054 -12.89767 -12.84450 -12.68764 -12.21383 -12.16196 -12.08327 -11.93866 -11.74642 -11.68366 -11.34202 -11.26077 -11.13930 -10.64333 -10.01166 -9.42581 -9.24285 -8.35209 -5.94201 1.31089 1.43464 1.44972 2.19760 2.40353 2.94302 3.19543 3.38929 3.75372 3.89208 3.95077 4.08165 4.13852 4.27911 4.32517 4.36559 4.44381 4.47436 4.55763 4.62168 4.71944 4.76338 4.88973 4.92876 4.95341 4.97745 5.00222 5.04875 5.10398 5.12859 5.19557 5.23303 5.29986 5.40563 5.44910 5.47169 5.51779 5.64952 6.01977 6.14787 6.56297 6.98884 7.19838 7.67929 8.32100 8.70637 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013235 B = 0.008954 C = 0.006130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.086389 B = 3126.462767 C = 4566.266651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.139 4.139 4 C 0.099 3.901 5 N -0.461 5.461 6 C -0.375 4.375 7 H 0.077 0.923 8 C 0.047 3.953 9 N -0.860 5.860 10 Si 0.944 3.056 11 H -0.296 1.296 12 H -0.281 1.281 13 H -0.254 1.254 14 C 0.481 3.519 15 O -0.613 6.613 16 C -0.090 4.090 17 H 0.099 0.901 18 C -0.103 4.103 19 C -0.106 4.106 20 C 0.058 3.942 21 N -0.673 5.673 22 C 0.110 3.890 23 H 0.013 0.987 24 C -0.144 4.144 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.260 0.740 35 H 0.035 0.965 36 H 0.042 0.958 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.107 0.893 40 H 0.020 0.980 41 H 0.355 0.645 42 H 0.076 0.924 43 H 0.037 0.963 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.211 -9.153 10.550 16.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C -0.177 4.177 4 C -0.024 4.024 5 N -0.181 5.181 6 C -0.501 4.501 7 H 0.095 0.905 8 C -0.160 4.160 9 N -0.495 5.495 10 Si 0.769 3.231 11 H -0.223 1.223 12 H -0.207 1.207 13 H -0.177 1.177 14 C 0.271 3.729 15 O -0.498 6.498 16 C -0.112 4.112 17 H 0.117 0.883 18 C -0.141 4.141 19 C -0.144 4.144 20 C -0.071 4.071 21 N -0.307 5.307 22 C -0.001 4.001 23 H 0.031 0.969 24 C -0.201 4.201 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.125 0.875 40 H 0.038 0.962 41 H 0.175 0.825 42 H 0.095 0.905 43 H 0.056 0.944 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.703 -9.176 10.152 15.703 hybrid contribution 0.509 2.214 -0.628 2.357 sum -7.193 -6.963 9.523 13.817 Atomic orbital electron populations 1.21730 0.94872 1.02145 1.01673 1.21431 0.96597 0.94899 1.02404 1.22217 0.94608 0.98374 1.02481 1.21823 0.95102 0.84100 1.01339 1.43599 1.58623 1.10985 1.04857 1.19066 1.04703 1.29129 0.97224 0.90495 1.25736 0.93088 1.00942 0.96278 1.70166 0.99541 1.34145 1.45625 0.85731 0.78214 0.81176 0.77982 1.22312 1.20694 1.17733 1.20602 0.79971 0.87182 0.85166 1.90440 1.53438 1.19197 1.86695 1.21321 0.96859 1.00470 0.92510 0.88271 1.21391 0.95152 0.99717 0.97889 1.21580 0.99226 1.00158 0.93450 1.21999 0.88780 0.98803 0.97549 1.60289 1.05585 1.58949 1.05849 1.21040 0.94984 0.93571 0.90478 0.96886 1.22005 0.95040 1.03076 0.99960 0.92458 0.93509 0.91368 0.92196 0.90851 0.90391 0.93917 0.92875 0.90463 0.93023 0.94610 0.93885 0.89936 0.90223 0.87506 0.96182 0.82496 0.90547 0.94442 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.91 71.98 0.71 -2.29 16 2 C -0.12 -2.79 5.93 30.60 0.18 -2.61 16 3 C -0.14 -4.50 5.49 30.60 0.17 -4.33 16 4 C 0.10 3.93 5.37 86.38 0.46 4.40 16 5 N -0.46 -23.50 2.55 -635.53 -1.62 -25.13 16 6 C -0.38 -21.49 9.06 84.04 0.76 -20.73 16 7 H 0.08 4.30 8.03 -2.91 -0.02 4.27 16 8 C 0.05 2.81 3.79 84.93 0.32 3.13 16 9 N -0.86 -53.14 12.96 21.66 0.28 -52.86 16 10 Si 0.94 47.68 29.67 68.60 2.04 49.71 16 11 H -0.30 -15.83 7.11 99.48 0.71 -15.13 16 12 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 13 H -0.25 -11.84 7.11 99.48 0.71 -11.13 16 14 C 0.48 24.82 4.60 87.65 0.40 25.23 16 15 O -0.61 -37.78 15.09 -3.09 -0.05 -37.83 16 16 C -0.09 -3.55 1.92 -11.49 -0.02 -3.58 16 17 H 0.10 3.63 5.18 -2.39 -0.01 3.62 16 18 C -0.10 -3.97 5.18 30.67 0.16 -3.81 16 19 C -0.11 -2.85 6.09 30.65 0.19 -2.66 16 20 C 0.06 1.35 6.55 86.33 0.57 1.91 16 21 N -0.67 -16.70 6.50 -491.69 -3.20 -19.90 16 22 C 0.11 3.67 2.52 44.94 0.11 3.78 16 23 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 24 C -0.14 -4.32 7.83 71.98 0.56 -3.76 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.08 2.47 3.61 -2.38 -0.01 2.47 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 2.18 8.10 -2.38 -0.02 2.16 16 33 H 0.08 2.76 5.29 -2.39 -0.01 2.75 16 34 H 0.26 15.54 8.32 -92.71 -0.77 14.77 16 35 H 0.04 1.55 7.96 -2.38 -0.02 1.53 16 36 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.36 6.97 8.79 -89.70 -0.79 6.18 16 42 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 43 H 0.04 1.39 6.53 -2.39 -0.02 1.37 16 44 H 0.08 2.27 6.58 -2.39 -0.02 2.26 16 Total: -1.00 -73.37 336.58 2.21 -71.16 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.18 Total: 20.17 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 4.58 Total: -5.32 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -4.54 Total: -97.89 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -0.05 Total: -37.83 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.04 Total: 49.71 kcal Total: -73.37 2.21 -71.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160732018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.633 kcal (2) G-P(sol) polarization free energy of solvation -73.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds