Wall clock time and date at job start Mon Mar 30 2020 00:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47269 * 2 1 4 4 C 1.53005 * 109.47362 * 120.00070 * 2 1 3 5 5 C 1.50698 * 109.47016 * 64.99705 * 4 2 1 6 6 O 1.21278 * 120.00275 * 359.72982 * 5 4 2 7 7 N 1.34774 * 119.99432 * 179.97438 * 5 4 2 8 8 C 1.46500 * 119.99709 * 179.72525 * 7 5 4 9 9 C 1.53002 * 109.47205 * 180.02562 * 8 7 5 10 10 C 1.53007 * 109.47213 * 175.02174 * 9 8 7 11 11 C 1.52994 * 115.55143 * 278.03840 * 10 9 8 12 12 N 1.46500 * 109.46990 * 303.89478 * 11 10 9 13 13 C 1.36938 * 119.99934 * 175.59434 * 12 11 10 14 14 H 1.08001 * 120.00243 * 0.02562 * 13 12 11 15 15 C 1.38813 * 120.00102 * 180.02562 * 13 12 11 16 16 N 1.31619 * 119.99784 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00290 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46880 * 59.99935 * 17 15 13 19 19 H 1.48494 * 109.47109 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46692 * 300.00062 * 17 15 13 21 21 C 1.53001 * 117.49660 * 132.32119 * 10 9 8 22 22 C 1.53000 * 60.00148 * 252.51677 * 21 10 9 23 23 H 1.09002 * 109.47354 * 300.00009 * 1 2 3 24 24 H 1.09004 * 109.47399 * 60.00291 * 1 2 3 25 25 H 1.09007 * 109.47224 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47354 * 239.99991 * 2 1 3 27 27 H 1.08996 * 109.47333 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46673 * 300.00154 * 3 2 1 29 29 H 1.08994 * 109.47191 * 59.99939 * 3 2 1 30 30 H 1.09002 * 109.46762 * 305.00139 * 4 2 1 31 31 H 1.08998 * 109.46828 * 185.00076 * 4 2 1 32 32 H 0.96993 * 120.00881 * 359.73034 * 7 5 4 33 33 H 1.09008 * 109.47334 * 300.00473 * 8 7 5 34 34 H 1.09000 * 109.47607 * 60.00361 * 8 7 5 35 35 H 1.08994 * 109.47321 * 295.02070 * 9 8 7 36 36 H 1.09000 * 109.46939 * 55.03004 * 9 8 7 37 37 H 1.08996 * 109.47468 * 63.89589 * 11 10 9 38 38 H 1.09007 * 109.47285 * 183.89754 * 11 10 9 39 39 H 0.96999 * 120.00164 * 355.59535 * 12 11 10 40 40 H 0.97005 * 120.00089 * 179.97438 * 16 15 13 41 41 H 1.09004 * 117.50034 * 0.02562 * 21 10 9 42 42 H 1.08999 * 117.49281 * 145.02207 * 21 10 9 43 43 H 1.09000 * 117.49760 * 252.50949 * 22 21 10 44 44 H 1.08993 * 117.49485 * 107.49592 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 -2.1733 1.1889 6 8 1.0070 -2.5892 0.2426 7 7 1.9854 -3.0086 2.1890 8 6 1.5926 -4.4189 2.1333 9 6 2.1038 -5.1404 3.3819 10 6 1.5891 -6.5813 3.3850 11 6 0.1631 -6.7715 3.9055 12 7 0.0587 -6.2170 5.2575 13 6 -1.1528 -6.1913 5.8954 14 1 -2.0313 -6.5801 5.4019 15 6 -1.2518 -5.6654 7.1762 16 7 -0.1811 -5.1920 7.7778 17 14 -2.9042 -5.6309 8.0466 18 1 -3.4188 -7.0168 8.1870 19 1 -2.7424 -5.0237 9.3920 20 1 -3.8652 -4.8242 7.2523 21 6 2.6009 -7.6923 3.6730 22 6 2.0575 -7.5011 2.2556 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6053 -0.2617 2.1370 31 1 3.1263 -0.6443 1.2951 32 1 2.4930 -2.6762 2.9457 33 1 0.5058 -4.4920 2.0912 34 1 2.0225 -4.8810 1.2447 35 1 3.1938 -5.1440 3.3788 36 1 1.7446 -4.6245 4.2723 37 1 -0.5360 -6.2565 3.2467 38 1 -0.0763 -7.8347 3.9294 39 1 0.8478 -5.8682 5.7009 40 1 -0.2503 -4.8242 8.6727 41 1 3.6332 -7.3966 3.8606 42 1 2.2507 -8.5589 4.2337 43 1 1.3498 -8.2421 1.8837 44 1 2.7323 -7.0798 1.5105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163201548.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:56 Heat of formation + Delta-G solvation = -28.595962 kcal Electronic energy + Delta-G solvation = -20566.504179 eV Core-core repulsion = 17518.967669 eV Total energy + Delta-G solvation = -3047.536510 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.82479 -38.29781 -35.84162 -34.59889 -33.92828 -30.81058 -30.34483 -27.91893 -27.17372 -25.91462 -23.36803 -22.71675 -21.85192 -20.88447 -19.94175 -18.48343 -17.12710 -16.89149 -16.03940 -15.67397 -15.23818 -14.77057 -14.39133 -14.34500 -13.91126 -13.73700 -13.31652 -13.11363 -12.73511 -12.38926 -12.35794 -12.24284 -12.00368 -11.83945 -11.42411 -11.21888 -11.09028 -11.00144 -10.90824 -10.81576 -10.79147 -10.54631 -10.17002 -9.92231 -9.70690 -9.56086 -9.31055 -8.89994 -8.82274 -6.89737 -5.75864 -3.03528 2.74637 3.28965 3.44964 3.49166 3.50172 4.07122 4.61695 4.63187 4.73540 4.79530 5.04246 5.09805 5.15927 5.21062 5.35206 5.37151 5.45857 5.49717 5.56853 5.60176 5.63307 5.71319 5.78964 5.80211 5.85600 5.91831 6.01996 6.17626 6.20606 6.23302 6.25506 6.39105 6.44154 6.46654 6.55805 6.65271 6.78098 6.84971 7.61231 7.70904 8.34165 8.43503 9.55015 10.13182 10.48954 11.47021 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014438 B = 0.004303 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.853990 B = 6506.225192 C = 7867.432338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.080 4.080 3 C -0.148 4.148 4 C -0.139 4.139 5 C 0.510 3.490 6 O -0.542 6.542 7 N -0.729 5.729 8 C 0.126 3.874 9 C -0.092 4.092 10 C -0.118 4.118 11 C 0.188 3.812 12 N -0.727 5.727 13 C -0.238 4.238 14 H 0.069 0.931 15 C -0.013 4.013 16 N -0.934 5.934 17 Si 0.906 3.094 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C -0.167 4.167 22 C -0.178 4.178 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.400 0.600 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.025 0.975 38 H 0.017 0.983 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.810 7.547 -13.361 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.099 4.099 3 C -0.205 4.205 4 C -0.179 4.179 5 C 0.297 3.703 6 O -0.419 6.419 7 N -0.380 5.380 8 C 0.003 3.997 9 C -0.130 4.130 10 C -0.119 4.119 11 C 0.061 3.939 12 N -0.372 5.372 13 C -0.370 4.370 14 H 0.087 0.913 15 C -0.209 4.209 16 N -0.583 5.583 17 Si 0.737 3.263 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.213 1.213 21 C -0.204 4.204 22 C -0.215 4.215 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.234 0.766 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.043 0.957 38 H 0.035 0.965 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.107 0.893 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.166 7.218 -13.996 17.739 hybrid contribution -0.368 0.241 1.198 1.276 sum 7.798 7.460 -12.798 16.740 Atomic orbital electron populations 1.21973 0.94679 1.03619 1.00935 1.20845 0.96738 0.95143 0.97150 1.21868 1.00727 0.95974 1.01953 1.21793 1.02665 0.92395 1.01045 1.20683 0.79242 0.88243 0.82179 1.90655 1.39602 1.78088 1.33583 1.46106 1.57591 1.10528 1.23780 1.21322 1.00865 0.79442 0.98119 1.21267 0.99407 0.93950 0.98371 1.21575 0.96985 0.90903 1.02464 1.20170 0.90015 0.96087 0.87677 1.42296 1.08855 1.73523 1.12495 1.19200 0.87377 1.33377 0.96996 0.91320 1.24702 0.97149 1.01701 0.97338 1.69647 1.27319 1.46782 1.14575 0.86280 0.83561 0.77614 0.78830 1.21304 1.21703 1.21299 1.22995 0.98221 1.00880 0.98277 1.22959 1.03756 1.03139 0.91668 0.93299 0.93108 0.90525 0.90579 0.92789 0.92502 0.92601 0.88817 0.89134 0.76600 0.91078 0.92000 0.92081 0.89232 0.95671 0.96493 0.78151 0.93547 0.89335 0.88711 0.88958 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.93 37.15 0.33 -1.42 16 2 C -0.08 -0.80 2.57 -90.62 -0.23 -1.03 16 3 C -0.15 -1.15 9.19 37.16 0.34 -0.81 16 4 C -0.14 -1.35 5.17 -27.88 -0.14 -1.50 16 5 C 0.51 6.86 7.55 -10.99 -0.08 6.78 16 6 O -0.54 -9.21 13.96 5.56 0.08 -9.13 16 7 N -0.73 -9.30 5.56 -60.29 -0.33 -9.64 16 8 C 0.13 1.83 5.49 -4.04 -0.02 1.81 16 9 C -0.09 -1.37 5.20 -26.73 -0.14 -1.51 16 10 C -0.12 -1.91 1.65 -154.51 -0.25 -2.16 16 11 C 0.19 3.84 6.15 -4.04 -0.02 3.81 16 12 N -0.73 -18.24 5.23 -59.91 -0.31 -18.55 16 13 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 14 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 15 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 16 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 17 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 C -0.17 -2.43 9.87 -26.73 -0.26 -2.69 16 22 C -0.18 -2.39 9.57 -26.73 -0.26 -2.65 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.08 1.08 5.94 -51.93 -0.31 0.77 16 26 H 0.08 0.85 7.96 -51.93 -0.41 0.43 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.40 4.17 8.47 -40.82 -0.35 3.82 16 33 H 0.07 1.22 7.96 -51.92 -0.41 0.81 16 34 H 0.06 0.88 7.72 -51.93 -0.40 0.48 16 35 H 0.06 0.78 7.93 -51.93 -0.41 0.37 16 36 H 0.09 1.56 6.94 -51.93 -0.36 1.20 16 37 H 0.03 0.53 7.96 -51.93 -0.41 0.12 16 38 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16 39 H 0.38 10.02 6.80 -40.82 -0.28 9.75 16 40 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.09 1.16 8.07 -51.93 -0.42 0.74 16 42 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.09 1.08 7.90 -51.93 -0.41 0.67 16 LS Contribution 356.68 15.07 5.38 5.38 Total: -1.00 -31.76 356.68 -8.43 -40.19 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -7.95 Total: 10.17 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -0.99 Total: -8.68 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.08 Total: -55.39 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.08 Total: -9.13 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.76 -8.43 -40.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163201548.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.597 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds