Wall clock time and date at job start Mon Mar 30 2020 00:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47269 * 2 1 4 4 C 1.53005 * 109.47362 * 120.00070 * 2 1 3 5 5 C 1.50698 * 109.47016 * 64.99705 * 4 2 1 6 6 O 1.21278 * 120.00275 * 359.72982 * 5 4 2 7 7 N 1.34774 * 119.99432 * 179.97438 * 5 4 2 8 8 C 1.46500 * 119.99709 * 179.72525 * 7 5 4 9 9 C 1.53002 * 109.47205 * 180.02562 * 8 7 5 10 10 C 1.53007 * 109.47213 * 175.02174 * 9 8 7 11 11 C 1.52994 * 115.55143 * 278.03840 * 10 9 8 12 12 N 1.46500 * 109.46990 * 303.89478 * 11 10 9 13 13 C 1.36938 * 119.99934 * 175.59434 * 12 11 10 14 14 H 1.08001 * 120.00243 * 0.02562 * 13 12 11 15 15 C 1.38813 * 120.00102 * 180.02562 * 13 12 11 16 16 N 1.31619 * 119.99784 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00290 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46880 * 59.99935 * 17 15 13 19 19 H 1.48494 * 109.47109 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46692 * 300.00062 * 17 15 13 21 21 C 1.53001 * 117.49660 * 132.32119 * 10 9 8 22 22 C 1.53000 * 60.00148 * 252.51677 * 21 10 9 23 23 H 1.09002 * 109.47354 * 300.00009 * 1 2 3 24 24 H 1.09004 * 109.47399 * 60.00291 * 1 2 3 25 25 H 1.09007 * 109.47224 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47354 * 239.99991 * 2 1 3 27 27 H 1.08996 * 109.47333 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46673 * 300.00154 * 3 2 1 29 29 H 1.08994 * 109.47191 * 59.99939 * 3 2 1 30 30 H 1.09002 * 109.46762 * 305.00139 * 4 2 1 31 31 H 1.08998 * 109.46828 * 185.00076 * 4 2 1 32 32 H 0.96993 * 120.00881 * 359.73034 * 7 5 4 33 33 H 1.09008 * 109.47334 * 300.00473 * 8 7 5 34 34 H 1.09000 * 109.47607 * 60.00361 * 8 7 5 35 35 H 1.08994 * 109.47321 * 295.02070 * 9 8 7 36 36 H 1.09000 * 109.46939 * 55.03004 * 9 8 7 37 37 H 1.08996 * 109.47468 * 63.89589 * 11 10 9 38 38 H 1.09007 * 109.47285 * 183.89754 * 11 10 9 39 39 H 0.96999 * 120.00164 * 355.59535 * 12 11 10 40 40 H 0.97005 * 120.00089 * 179.97438 * 16 15 13 41 41 H 1.09004 * 117.50034 * 0.02562 * 21 10 9 42 42 H 1.08999 * 117.49281 * 145.02207 * 21 10 9 43 43 H 1.09000 * 117.49760 * 252.50949 * 22 21 10 44 44 H 1.08993 * 117.49485 * 107.49592 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 -2.1733 1.1889 6 8 1.0070 -2.5892 0.2426 7 7 1.9854 -3.0086 2.1890 8 6 1.5926 -4.4189 2.1333 9 6 2.1038 -5.1404 3.3819 10 6 1.5891 -6.5813 3.3850 11 6 0.1631 -6.7715 3.9055 12 7 0.0587 -6.2170 5.2575 13 6 -1.1528 -6.1913 5.8954 14 1 -2.0313 -6.5801 5.4019 15 6 -1.2518 -5.6654 7.1762 16 7 -0.1811 -5.1920 7.7778 17 14 -2.9042 -5.6309 8.0466 18 1 -3.4188 -7.0168 8.1870 19 1 -2.7424 -5.0237 9.3920 20 1 -3.8652 -4.8242 7.2523 21 6 2.6009 -7.6923 3.6730 22 6 2.0575 -7.5011 2.2556 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6053 -0.2617 2.1370 31 1 3.1263 -0.6443 1.2951 32 1 2.4930 -2.6762 2.9457 33 1 0.5058 -4.4920 2.0912 34 1 2.0225 -4.8810 1.2447 35 1 3.1938 -5.1440 3.3788 36 1 1.7446 -4.6245 4.2723 37 1 -0.5360 -6.2565 3.2467 38 1 -0.0763 -7.8347 3.9294 39 1 0.8478 -5.8682 5.7009 40 1 -0.2503 -4.8242 8.6727 41 1 3.6332 -7.3966 3.8606 42 1 2.2507 -8.5589 4.2337 43 1 1.3498 -8.2421 1.8837 44 1 2.7323 -7.0798 1.5105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163201548.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:55 Heat of formation + Delta-G solvation = -48.676112 kcal Electronic energy + Delta-G solvation = -20567.374920 eV Core-core repulsion = 17518.967669 eV Total energy + Delta-G solvation = -3048.407251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.90492 -39.57613 -36.72922 -35.97001 -35.63036 -32.80156 -31.49964 -28.84622 -27.94481 -27.74451 -24.65156 -24.52553 -23.03178 -21.90361 -20.84891 -19.89925 -19.04068 -17.95942 -17.13382 -16.81562 -16.67753 -16.27307 -15.72775 -15.56326 -15.21345 -14.87592 -14.66415 -14.55887 -14.21510 -13.93046 -13.26111 -13.15499 -13.04137 -13.00198 -12.76973 -12.75240 -12.53675 -12.28991 -12.16518 -12.04945 -11.93416 -11.85622 -11.70167 -11.56741 -11.10689 -10.93472 -10.74257 -10.50984 -10.02722 -8.97837 -7.95126 -5.22717 1.46213 1.48651 1.54796 1.69982 2.26965 2.54374 2.89868 3.37861 3.75650 3.83354 3.83995 3.93975 3.99259 4.03957 4.10230 4.25750 4.39045 4.41286 4.48841 4.65563 4.71041 4.72735 4.75569 4.83149 4.85999 4.93837 4.97730 5.05512 5.06918 5.11772 5.20349 5.27172 5.30407 5.33119 5.37982 5.42433 5.48190 5.51667 5.57426 6.27304 6.61141 7.31795 7.34591 8.10180 8.36734 9.27835 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014438 B = 0.004303 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.853990 B = 6506.225192 C = 7867.432338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.080 4.080 3 C -0.142 4.142 4 C -0.132 4.132 5 C 0.503 3.497 6 O -0.583 6.583 7 N -0.723 5.723 8 C 0.135 3.865 9 C -0.078 4.078 10 C -0.142 4.142 11 C 0.189 3.811 12 N -0.735 5.735 13 C -0.250 4.250 14 H 0.068 0.932 15 C -0.068 4.068 16 N -0.964 5.964 17 Si 0.969 3.031 18 H -0.279 1.279 19 H -0.292 1.292 20 H -0.281 1.281 21 C -0.163 4.163 22 C -0.152 4.152 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.413 0.587 33 H 0.036 0.964 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.013 0.987 38 H 0.013 0.987 39 H 0.378 0.622 40 H 0.252 0.748 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.091 8.207 -13.819 18.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.099 4.099 3 C -0.199 4.199 4 C -0.172 4.172 5 C 0.291 3.709 6 O -0.463 6.463 7 N -0.375 5.375 8 C 0.011 3.989 9 C -0.115 4.115 10 C -0.143 4.143 11 C 0.062 3.938 12 N -0.378 5.378 13 C -0.382 4.382 14 H 0.086 0.914 15 C -0.261 4.261 16 N -0.614 5.614 17 Si 0.798 3.202 18 H -0.206 1.206 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.200 4.200 22 C -0.189 4.189 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.125 0.875 31 H 0.139 0.861 32 H 0.249 0.751 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.031 0.969 38 H 0.031 0.969 39 H 0.210 0.790 40 H 0.061 0.939 41 H 0.127 0.873 42 H 0.101 0.899 43 H 0.114 0.886 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.456 7.870 -14.465 18.989 hybrid contribution -0.794 -0.011 1.282 1.508 sum 8.662 7.859 -13.183 17.623 Atomic orbital electron populations 1.21949 0.96052 1.01568 1.01617 1.20848 0.95597 0.96722 0.96741 1.21813 1.01598 0.94003 1.02469 1.21851 1.04586 0.89348 1.01393 1.21426 0.78320 0.89708 0.81408 1.90643 1.41394 1.79051 1.35217 1.46073 1.57393 1.09854 1.24222 1.21099 0.98717 0.80719 0.98346 1.21108 1.00835 0.92749 0.96857 1.21425 0.94991 0.92450 1.05397 1.20204 0.93092 0.95022 0.85440 1.42426 1.07710 1.73638 1.14021 1.19566 0.88497 1.32727 0.97420 0.91360 1.25466 1.00492 1.01998 0.98144 1.69789 1.29133 1.47868 1.14660 0.85279 0.79685 0.77752 0.77448 1.20560 1.21748 1.20747 1.23058 0.98602 0.99341 0.98958 1.23042 1.03148 1.01379 0.91363 0.92707 0.92364 0.93833 0.91988 0.91343 0.92182 0.91936 0.87486 0.86110 0.75084 0.94587 0.91260 0.89214 0.92252 0.96881 0.96904 0.78964 0.93926 0.87280 0.89892 0.88588 0.86878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.93 71.98 0.64 -2.83 16 2 C -0.08 -1.51 2.57 -10.79 -0.03 -1.53 16 3 C -0.14 -1.85 9.19 71.98 0.66 -1.18 16 4 C -0.13 -2.33 5.17 29.85 0.15 -2.17 16 5 C 0.50 13.28 7.55 87.66 0.66 13.94 16 6 O -0.58 -20.22 13.96 -3.02 -0.04 -20.26 16 7 N -0.72 -17.91 5.56 -463.06 -2.57 -20.48 16 8 C 0.14 3.90 5.49 86.38 0.47 4.38 16 9 C -0.08 -2.24 5.20 30.60 0.16 -2.08 16 10 C -0.14 -4.47 1.65 -52.18 -0.09 -4.55 16 11 C 0.19 7.86 6.15 86.38 0.53 8.39 16 12 N -0.73 -37.66 5.23 -343.46 -1.80 -39.45 16 13 C -0.25 -14.26 9.99 84.03 0.84 -13.42 16 14 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 15 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 16 N -0.96 -58.32 13.06 21.65 0.28 -58.04 16 17 Si 0.97 46.49 29.55 68.60 2.03 48.52 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 19 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 20 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 21 C -0.16 -4.43 9.87 30.59 0.30 -4.13 16 22 C -0.15 -3.74 9.57 30.60 0.29 -3.45 16 23 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.04 1.27 5.94 -2.38 -0.01 1.26 16 26 H 0.06 1.34 7.96 -2.39 -0.02 1.32 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.11 1.64 8.14 -2.39 -0.02 1.63 16 31 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.41 8.01 8.47 -92.71 -0.79 7.22 16 33 H 0.04 1.29 7.96 -2.38 -0.02 1.27 16 34 H 0.07 1.90 7.72 -2.39 -0.02 1.88 16 35 H 0.09 2.08 7.93 -2.39 -0.02 2.06 16 36 H 0.06 2.09 6.94 -2.39 -0.02 2.07 16 37 H 0.01 0.58 7.96 -2.39 -0.02 0.56 16 38 H 0.01 0.55 8.10 -2.38 -0.02 0.53 16 39 H 0.38 20.16 6.80 -92.71 -0.63 19.53 16 40 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 41 H 0.11 2.53 8.07 -2.38 -0.02 2.51 16 42 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.11 2.31 7.90 -2.39 -0.02 2.29 16 Total: -1.00 -69.80 356.68 2.53 -67.28 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: -0.45 Total: 34.56 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 5.07 Total: -12.12 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -4.09 Total: -117.97 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.04 Total: -20.26 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -69.80 2.53 -67.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163201548.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.601 kcal (2) G-P(sol) polarization free energy of solvation -69.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds