Wall clock time and date at job start Mon Mar 30 2020 00:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46828 * 2 1 4 4 C 1.52993 * 109.47036 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47048 * 180.02562 * 4 3 2 6 6 O 1.21280 * 119.99819 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99680 * 179.97438 * 5 4 3 8 8 C 1.46508 * 119.99494 * 174.67488 * 7 5 4 9 9 C 1.52999 * 109.46664 * 184.61499 * 8 7 5 10 10 C 1.53001 * 109.46628 * 178.77744 * 9 8 7 11 11 C 1.52998 * 115.55234 * 40.17921 * 10 9 8 12 12 N 1.46491 * 109.47530 * 65.19473 * 11 10 9 13 13 C 1.36940 * 120.00331 * 185.11974 * 12 11 10 14 14 H 1.07996 * 119.99936 * 4.91291 * 13 12 11 15 15 C 1.38817 * 119.99985 * 184.91070 * 13 12 11 16 16 N 1.31619 * 119.99784 * 183.49543 * 15 13 12 17 17 Si 1.86794 * 120.00077 * 3.49493 * 15 13 12 18 18 H 1.48505 * 109.47043 * 91.18395 * 17 15 13 19 19 H 1.48506 * 109.47036 * 211.17983 * 17 15 13 20 20 H 1.48499 * 109.47087 * 331.18085 * 17 15 13 21 21 C 1.53004 * 117.49835 * 254.46334 * 10 9 8 22 22 C 1.53001 * 60.00305 * 252.51476 * 21 10 9 23 23 H 1.09004 * 109.47009 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47399 * 299.99713 * 1 2 3 25 25 H 1.08998 * 109.47760 * 60.00333 * 1 2 3 26 26 H 1.08994 * 109.46766 * 240.00242 * 2 1 3 27 27 H 1.09001 * 109.47312 * 119.99906 * 2 1 3 28 28 H 1.09001 * 109.46896 * 59.99978 * 3 2 1 29 29 H 1.09001 * 109.47097 * 300.00037 * 3 2 1 30 30 H 1.09000 * 109.47239 * 59.99641 * 4 3 2 31 31 H 1.09001 * 109.46902 * 299.99782 * 4 3 2 32 32 H 0.96992 * 120.00202 * 354.40070 * 7 5 4 33 33 H 1.08998 * 109.46892 * 304.61394 * 8 7 5 34 34 H 1.09001 * 109.46985 * 64.61301 * 8 7 5 35 35 H 1.09001 * 109.47001 * 298.77447 * 9 8 7 36 36 H 1.08995 * 109.47511 * 58.77794 * 9 8 7 37 37 H 1.09000 * 109.47196 * 185.19474 * 11 10 9 38 38 H 1.09000 * 109.46817 * 305.19560 * 11 10 9 39 39 H 0.97004 * 120.00341 * 5.12069 * 12 11 10 40 40 H 0.96998 * 119.99955 * 180.02562 * 16 15 13 41 41 H 1.08998 * 117.49683 * 0.02562 * 21 10 9 42 42 H 1.09001 * 117.49443 * 145.02244 * 21 10 9 43 43 H 1.09002 * 117.49591 * 252.51342 * 22 21 10 44 44 H 1.08997 * 117.50428 * 107.48968 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0722 2.8635 0.0000 6 8 3.2840 3.7853 0.0004 7 7 5.3973 3.1098 0.0001 8 6 5.8865 4.4858 -0.1170 9 6 7.4138 4.4780 -0.2069 10 6 7.9229 5.9127 -0.3599 11 6 7.2024 6.9625 0.4883 12 7 7.4460 6.6946 1.9078 13 6 6.8144 7.4440 2.8643 14 1 6.0774 8.1785 2.5752 15 6 7.1214 7.2593 4.2054 16 7 6.4659 7.9298 5.1290 17 14 8.4649 6.0591 4.6994 18 1 9.7628 6.7760 4.7831 19 1 8.1393 5.4688 6.0226 20 1 8.5607 4.9786 3.6852 21 6 8.4231 6.3413 -1.7409 22 6 9.4206 6.1085 -0.6044 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.9329 0.9289 -0.8908 31 1 3.9336 0.9287 0.8891 32 1 6.0268 2.3765 0.0817 33 1 5.4720 4.9435 -1.0152 34 1 5.5768 5.0572 0.7580 35 1 7.8289 4.0400 0.7008 36 1 7.7241 3.8884 -1.0695 37 1 7.5785 7.9540 0.2360 38 1 6.1318 6.9184 0.2888 39 1 8.0547 5.9865 2.1703 40 1 6.6806 7.8011 6.0661 41 1 8.3890 5.6013 -2.5404 42 1 8.2386 7.3715 -2.0454 43 1 9.8924 6.9855 -0.1613 44 1 10.0432 5.2153 -0.6561 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163464424.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:59 Heat of formation + Delta-G solvation = -27.513450 kcal Electronic energy + Delta-G solvation = -20486.194116 eV Core-core repulsion = 17438.704547 eV Total energy + Delta-G solvation = -3047.489569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.66905 -38.39134 -35.59879 -34.66455 -34.04175 -31.24977 -30.98435 -29.62086 -26.26239 -25.05464 -22.98524 -22.43169 -21.80818 -21.23956 -20.30357 -18.77974 -17.44992 -16.73191 -16.15436 -15.92959 -15.20855 -15.05236 -14.51961 -14.23790 -13.96353 -13.87849 -13.51295 -13.24328 -12.78183 -12.61887 -12.47418 -12.36120 -11.88671 -11.61583 -11.48632 -11.39675 -11.35424 -11.16062 -11.11252 -10.89474 -10.74113 -10.71226 -10.16778 -9.88107 -9.67635 -9.56733 -9.44723 -8.86304 -8.83708 -7.17355 -5.72847 -3.07739 2.78641 3.28348 3.36718 3.41374 3.46134 3.94522 4.61738 4.63999 4.70488 4.77243 4.88129 4.94171 5.04711 5.09989 5.12869 5.24474 5.30779 5.41322 5.53080 5.56102 5.64192 5.66417 5.67792 5.73138 5.74347 5.78981 5.89944 5.96175 6.08406 6.09607 6.22769 6.23953 6.29606 6.34006 6.43518 6.57471 6.70824 6.76375 7.61518 8.05442 8.37363 8.46637 9.26542 9.98328 10.19503 11.45785 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014690 B = 0.004426 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.634181 B = 6324.355713 C = 7548.408598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.106 4.106 4 C -0.140 4.140 5 C 0.507 3.493 6 O -0.536 6.536 7 N -0.732 5.732 8 C 0.117 3.883 9 C -0.085 4.085 10 C -0.127 4.127 11 C 0.189 3.811 12 N -0.751 5.751 13 C -0.241 4.241 14 H 0.089 0.911 15 C 0.004 3.996 16 N -0.934 5.934 17 Si 0.887 3.113 18 H -0.285 1.285 19 H -0.292 1.292 20 H -0.279 1.279 21 C -0.172 4.172 22 C -0.171 4.171 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.396 0.604 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.025 0.975 38 H 0.038 0.962 39 H 0.362 0.638 40 H 0.259 0.741 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.468 -16.469 -14.772 22.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.144 4.144 4 C -0.180 4.180 5 C 0.293 3.707 6 O -0.413 6.413 7 N -0.384 5.384 8 C -0.006 4.006 9 C -0.122 4.122 10 C -0.128 4.128 11 C 0.062 3.938 12 N -0.396 5.396 13 C -0.371 4.371 14 H 0.107 0.893 15 C -0.192 4.192 16 N -0.582 5.582 17 Si 0.718 3.282 18 H -0.212 1.212 19 H -0.219 1.219 20 H -0.206 1.206 21 C -0.209 4.209 22 C -0.208 4.208 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.229 0.771 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.042 0.958 38 H 0.056 0.944 39 H 0.195 0.805 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.197 -15.598 -14.681 21.532 hybrid contribution 1.409 -1.185 0.581 1.930 sum -0.788 -16.782 -14.100 21.933 Atomic orbital electron populations 1.21765 0.95757 1.01392 1.02133 1.21547 0.96125 0.96709 1.01821 1.21382 0.92801 0.96437 1.03803 1.21696 0.98168 0.94093 1.04070 1.20707 0.82242 0.91660 0.76102 1.90731 1.55212 1.46560 1.48770 1.46069 1.07083 1.09918 1.75321 1.21498 0.93421 0.82310 1.03386 1.21180 0.94522 0.94796 1.01745 1.21661 0.96536 0.96074 0.98529 1.20218 0.96842 0.93155 0.83595 1.42668 1.55117 1.41115 1.00749 1.19070 1.16746 1.15077 0.86190 0.89286 1.24678 0.99441 0.99418 0.95617 1.69709 1.43524 1.45024 0.99950 0.86516 0.82938 0.81357 0.77435 1.21203 1.21894 1.20589 1.23024 1.04306 1.02311 0.91272 1.22965 0.91986 1.03226 1.02597 0.92904 0.92550 0.92680 0.92152 0.92014 0.91011 0.91247 0.89193 0.89095 0.77072 0.91656 0.89315 0.91086 0.91971 0.95769 0.94404 0.80489 0.93132 0.89185 0.88750 0.88454 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.12 -0.98 5.93 -26.73 -0.16 -1.14 16 3 C -0.11 -1.10 4.50 -26.73 -0.12 -1.22 16 4 C -0.14 -1.35 5.70 -27.88 -0.16 -1.51 16 5 C 0.51 7.21 7.82 -10.98 -0.09 7.12 16 6 O -0.54 -10.20 15.99 5.56 0.09 -10.12 16 7 N -0.73 -9.41 5.55 -60.29 -0.33 -9.74 16 8 C 0.12 1.79 4.80 -4.04 -0.02 1.77 16 9 C -0.08 -1.14 5.37 -26.73 -0.14 -1.28 16 10 C -0.13 -1.91 1.83 -154.50 -0.28 -2.19 16 11 C 0.19 3.69 5.32 -4.05 -0.02 3.67 16 12 N -0.75 -17.84 5.29 -59.91 -0.32 -18.16 16 13 C -0.24 -6.93 10.47 -15.06 -0.16 -7.09 16 14 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 15 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 16 N -0.93 -29.89 13.97 55.49 0.78 -29.12 16 17 Si 0.89 22.41 27.90 -169.99 -4.74 17.67 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 20 H -0.28 -6.55 6.30 56.52 0.36 -6.19 16 21 C -0.17 -2.12 9.87 -26.73 -0.26 -2.39 16 22 C -0.17 -2.31 9.97 -26.73 -0.27 -2.57 16 23 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 29 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.40 3.75 8.48 -40.82 -0.35 3.40 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.74 6.85 -51.93 -0.36 1.39 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.68 7.95 -51.93 -0.41 0.27 16 37 H 0.02 0.49 8.09 -51.93 -0.42 0.07 16 38 H 0.04 0.78 6.69 -51.93 -0.35 0.43 16 39 H 0.36 8.42 5.46 -40.82 -0.22 8.20 16 40 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 41 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 42 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 358.10 15.07 5.40 5.40 Total: -1.00 -34.13 358.10 -8.58 -42.72 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -8.04 Total: 8.98 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -1.41 Total: -7.63 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: 0.12 Total: -57.02 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.74 Total: 17.67 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.13 -8.58 -42.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163464424.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.204 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds