Wall clock time and date at job start Mon Mar 30 2020 00:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46828 * 2 1 4 4 C 1.52993 * 109.47036 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47048 * 180.02562 * 4 3 2 6 6 O 1.21280 * 119.99819 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99680 * 179.97438 * 5 4 3 8 8 C 1.46508 * 119.99494 * 174.67488 * 7 5 4 9 9 C 1.52999 * 109.46664 * 184.61499 * 8 7 5 10 10 C 1.53001 * 109.46628 * 178.77744 * 9 8 7 11 11 C 1.52998 * 115.55234 * 40.17921 * 10 9 8 12 12 N 1.46491 * 109.47530 * 65.19473 * 11 10 9 13 13 C 1.36940 * 120.00331 * 185.11974 * 12 11 10 14 14 H 1.07996 * 119.99936 * 4.91291 * 13 12 11 15 15 C 1.38817 * 119.99985 * 184.91070 * 13 12 11 16 16 N 1.31619 * 119.99784 * 183.49543 * 15 13 12 17 17 Si 1.86794 * 120.00077 * 3.49493 * 15 13 12 18 18 H 1.48505 * 109.47043 * 91.18395 * 17 15 13 19 19 H 1.48506 * 109.47036 * 211.17983 * 17 15 13 20 20 H 1.48499 * 109.47087 * 331.18085 * 17 15 13 21 21 C 1.53004 * 117.49835 * 254.46334 * 10 9 8 22 22 C 1.53001 * 60.00305 * 252.51476 * 21 10 9 23 23 H 1.09004 * 109.47009 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47399 * 299.99713 * 1 2 3 25 25 H 1.08998 * 109.47760 * 60.00333 * 1 2 3 26 26 H 1.08994 * 109.46766 * 240.00242 * 2 1 3 27 27 H 1.09001 * 109.47312 * 119.99906 * 2 1 3 28 28 H 1.09001 * 109.46896 * 59.99978 * 3 2 1 29 29 H 1.09001 * 109.47097 * 300.00037 * 3 2 1 30 30 H 1.09000 * 109.47239 * 59.99641 * 4 3 2 31 31 H 1.09001 * 109.46902 * 299.99782 * 4 3 2 32 32 H 0.96992 * 120.00202 * 354.40070 * 7 5 4 33 33 H 1.08998 * 109.46892 * 304.61394 * 8 7 5 34 34 H 1.09001 * 109.46985 * 64.61301 * 8 7 5 35 35 H 1.09001 * 109.47001 * 298.77447 * 9 8 7 36 36 H 1.08995 * 109.47511 * 58.77794 * 9 8 7 37 37 H 1.09000 * 109.47196 * 185.19474 * 11 10 9 38 38 H 1.09000 * 109.46817 * 305.19560 * 11 10 9 39 39 H 0.97004 * 120.00341 * 5.12069 * 12 11 10 40 40 H 0.96998 * 119.99955 * 180.02562 * 16 15 13 41 41 H 1.08998 * 117.49683 * 0.02562 * 21 10 9 42 42 H 1.09001 * 117.49443 * 145.02244 * 21 10 9 43 43 H 1.09002 * 117.49591 * 252.51342 * 22 21 10 44 44 H 1.08997 * 117.50428 * 107.48968 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0722 2.8635 0.0000 6 8 3.2840 3.7853 0.0004 7 7 5.3973 3.1098 0.0001 8 6 5.8865 4.4858 -0.1170 9 6 7.4138 4.4780 -0.2069 10 6 7.9229 5.9127 -0.3599 11 6 7.2024 6.9625 0.4883 12 7 7.4460 6.6946 1.9078 13 6 6.8144 7.4440 2.8643 14 1 6.0774 8.1785 2.5752 15 6 7.1214 7.2593 4.2054 16 7 6.4659 7.9298 5.1290 17 14 8.4649 6.0591 4.6994 18 1 9.7628 6.7760 4.7831 19 1 8.1393 5.4688 6.0226 20 1 8.5607 4.9786 3.6852 21 6 8.4231 6.3413 -1.7409 22 6 9.4206 6.1085 -0.6044 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.9329 0.9289 -0.8908 31 1 3.9336 0.9287 0.8891 32 1 6.0268 2.3765 0.0817 33 1 5.4720 4.9435 -1.0152 34 1 5.5768 5.0572 0.7580 35 1 7.8289 4.0400 0.7008 36 1 7.7241 3.8884 -1.0695 37 1 7.5785 7.9540 0.2360 38 1 6.1318 6.9184 0.2888 39 1 8.0547 5.9865 2.1703 40 1 6.6806 7.8011 6.0661 41 1 8.3890 5.6013 -2.5404 42 1 8.2386 7.3715 -2.0454 43 1 9.8924 6.9855 -0.1613 44 1 10.0432 5.2153 -0.6561 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163464424.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:58 Heat of formation + Delta-G solvation = -51.140648 kcal Electronic energy + Delta-G solvation = -20487.218668 eV Core-core repulsion = 17438.704547 eV Total energy + Delta-G solvation = -3048.514121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.82256 -39.60851 -36.41187 -36.02881 -35.78939 -33.24878 -32.06690 -30.58913 -28.06859 -25.96092 -24.30174 -23.96104 -23.05069 -22.02193 -21.38875 -20.39400 -19.19420 -17.84973 -17.14290 -17.03091 -16.62784 -16.40676 -16.08821 -15.47136 -15.25320 -14.90937 -14.77771 -14.55029 -14.26952 -14.02671 -13.71075 -13.43991 -13.24350 -13.03303 -12.87384 -12.60013 -12.24288 -12.19900 -12.18264 -12.07857 -11.91840 -11.86430 -11.82748 -11.44829 -11.12909 -11.01608 -10.81496 -10.57134 -10.05637 -9.29163 -8.04360 -5.37615 1.33142 1.40163 1.46915 1.67987 2.24862 2.46846 2.84307 3.26120 3.69295 3.74562 3.80424 3.92283 3.95204 4.05787 4.07725 4.11936 4.35740 4.43016 4.46139 4.50273 4.61979 4.64300 4.78325 4.85007 4.92759 4.94601 4.98240 5.04172 5.08523 5.11198 5.14338 5.23848 5.28335 5.30529 5.35347 5.39270 5.48136 5.53656 5.73521 6.19791 6.61245 7.07130 7.32909 7.82698 8.05635 9.17862 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014690 B = 0.004426 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.634181 B = 6324.355713 C = 7548.408598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C -0.107 4.107 4 C -0.129 4.129 5 C 0.497 3.503 6 O -0.597 6.597 7 N -0.719 5.719 8 C 0.124 3.876 9 C -0.072 4.072 10 C -0.150 4.150 11 C 0.188 3.812 12 N -0.747 5.747 13 C -0.236 4.236 14 H 0.046 0.954 15 C -0.067 4.067 16 N -0.987 5.987 17 Si 0.963 3.037 18 H -0.277 1.277 19 H -0.296 1.296 20 H -0.247 1.247 21 C -0.148 4.148 22 C -0.164 4.164 23 H 0.067 0.933 24 H 0.045 0.955 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.417 0.583 33 H 0.057 0.943 34 H 0.035 0.965 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.016 0.984 38 H 0.018 0.982 39 H 0.369 0.631 40 H 0.258 0.742 41 H 0.121 0.879 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.171 -20.241 -16.713 26.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.145 4.145 4 C -0.168 4.168 5 C 0.285 3.715 6 O -0.477 6.477 7 N -0.371 5.371 8 C 0.000 4.000 9 C -0.109 4.109 10 C -0.151 4.151 11 C 0.062 3.938 12 N -0.392 5.392 13 C -0.367 4.367 14 H 0.064 0.936 15 C -0.258 4.258 16 N -0.637 5.637 17 Si 0.790 3.210 18 H -0.204 1.204 19 H -0.223 1.223 20 H -0.171 1.171 21 C -0.186 4.186 22 C -0.201 4.201 23 H 0.086 0.914 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.144 0.856 31 H 0.132 0.868 32 H 0.254 0.746 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.122 0.878 37 H 0.034 0.966 38 H 0.036 0.964 39 H 0.203 0.797 40 H 0.067 0.933 41 H 0.139 0.861 42 H 0.110 0.890 43 H 0.101 0.899 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.484 -19.415 -16.677 25.599 hybrid contribution 0.477 0.114 1.125 1.227 sum 0.961 -19.302 -15.553 24.806 Atomic orbital electron populations 1.21801 0.96015 1.02125 1.01473 1.21511 0.95920 0.94854 1.03191 1.21364 0.93657 0.97826 1.01677 1.21738 0.97273 0.90986 1.06813 1.21665 0.82102 0.93102 0.74583 1.90711 1.56722 1.48787 1.51508 1.45953 1.07276 1.09579 1.74319 1.21211 0.95227 0.83083 1.00512 1.21120 0.92255 0.94154 1.03378 1.21487 0.97810 0.95568 1.00208 1.20253 0.96501 0.94793 0.82265 1.42561 1.54536 1.40486 1.01661 1.19014 1.15730 1.14326 0.87641 0.93599 1.25597 1.02565 1.02219 0.95396 1.69916 1.45883 1.47609 1.00307 0.85293 0.79026 0.79387 0.77333 1.20362 1.22272 1.17100 1.23142 1.01713 1.03098 0.90598 1.23046 0.90816 1.03795 1.02429 0.91413 0.93630 0.93054 0.90261 0.90991 0.93877 0.92885 0.85579 0.86752 0.74604 0.92479 0.94673 0.91429 0.87841 0.96614 0.96384 0.79749 0.93335 0.86087 0.89002 0.89926 0.86624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.91 71.98 0.71 -1.55 16 2 C -0.12 -1.60 5.93 30.60 0.18 -1.42 16 3 C -0.11 -2.15 4.50 30.59 0.14 -2.01 16 4 C -0.13 -2.17 5.70 29.85 0.17 -2.00 16 5 C 0.50 13.87 7.82 87.66 0.69 14.56 16 6 O -0.60 -23.80 15.99 -3.03 -0.05 -23.84 16 7 N -0.72 -17.26 5.55 -463.04 -2.57 -19.82 16 8 C 0.12 3.74 4.80 86.38 0.41 4.16 16 9 C -0.07 -1.71 5.37 30.59 0.16 -1.54 16 10 C -0.15 -4.18 1.83 -52.18 -0.10 -4.28 16 11 C 0.19 7.51 5.32 86.38 0.46 7.97 16 12 N -0.75 -35.92 5.29 -343.47 -1.82 -37.74 16 13 C -0.24 -14.17 10.47 84.03 0.88 -13.29 16 14 H 0.05 3.08 8.06 -2.91 -0.02 3.05 16 15 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 16 N -0.99 -65.65 13.97 21.65 0.30 -65.35 16 17 Si 0.96 46.35 27.90 68.60 1.91 48.26 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 20 H -0.25 -10.40 6.30 99.48 0.63 -9.77 16 21 C -0.15 -3.13 9.87 30.60 0.30 -2.83 16 22 C -0.16 -3.83 9.97 30.60 0.31 -3.53 16 23 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.04 1.09 8.10 -2.39 -0.02 1.07 16 29 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 30 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.42 6.41 8.48 -92.71 -0.79 5.63 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.03 1.44 6.85 -2.39 -0.02 1.43 16 35 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.10 1.68 7.95 -2.39 -0.02 1.66 16 37 H 0.02 0.66 8.09 -2.39 -0.02 0.64 16 38 H 0.02 0.79 6.69 -2.39 -0.02 0.78 16 39 H 0.37 16.63 5.46 -92.71 -0.51 16.13 16 40 H 0.26 16.25 8.31 -92.71 -0.77 15.47 16 41 H 0.12 1.88 8.09 -2.39 -0.02 1.87 16 42 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -80.59 358.10 2.16 -78.43 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: -0.41 Total: 29.45 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 4.78 Total: -9.38 kcal Atomic # 7 Polarization: -118.83 SS G_CDS: -4.08 Total: -122.92 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.05 Total: -23.84 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.91 Total: 48.26 kcal Total: -80.59 2.16 -78.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163464424.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.289 kcal (2) G-P(sol) polarization free energy of solvation -80.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds