Wall clock time and date at job start Mon Mar 30 2020 01:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47250 * 2 1 4 4 C 1.52994 * 109.47464 * 179.97438 * 3 2 1 5 5 N 1.46492 * 109.47454 * 179.97438 * 4 3 2 6 6 C 1.36937 * 120.00198 * 95.87914 * 5 4 3 7 7 H 1.07997 * 120.00388 * 215.98698 * 6 5 4 8 8 C 1.38819 * 119.99809 * 35.97856 * 6 5 4 9 9 N 1.31621 * 120.00049 * 214.50805 * 8 6 5 10 10 Si 1.86796 * 119.99846 * 34.51533 * 8 6 5 11 11 H 1.48508 * 109.47203 * 95.13100 * 10 8 6 12 12 H 1.48501 * 109.47250 * 215.13453 * 10 8 6 13 13 H 1.48503 * 109.47384 * 335.13349 * 10 8 6 14 14 C 1.46503 * 120.00236 * 275.87952 * 5 4 3 15 15 H 1.08999 * 109.49772 * 359.27013 * 14 5 4 16 16 C 1.53035 * 109.49767 * 119.37258 * 14 5 4 17 17 C 1.53040 * 109.53995 * 181.31664 * 16 14 5 18 18 C 1.53197 * 109.31383 * 298.63641 * 17 16 14 19 19 N 1.46926 * 108.77562 * 54.63046 * 18 17 16 20 20 C 1.34772 * 120.63116 * 126.41306 * 19 18 17 21 21 C 1.50697 * 119.99956 * 359.97438 * 20 19 18 22 22 O 1.21282 * 119.99980 * 179.97438 * 20 19 18 23 23 C 1.46927 * 118.73699 * 306.39371 * 19 18 17 24 24 H 1.08998 * 109.47266 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47047 * 300.00323 * 1 2 3 26 26 H 1.09002 * 109.46951 * 60.00168 * 1 2 3 27 27 H 1.08998 * 109.47047 * 239.99677 * 2 1 3 28 28 H 1.09002 * 109.46951 * 119.99832 * 2 1 3 29 29 H 1.09008 * 109.47437 * 59.99800 * 3 2 1 30 30 H 1.09002 * 109.47006 * 299.99798 * 3 2 1 31 31 H 1.09002 * 109.46935 * 299.99953 * 4 3 2 32 32 H 1.09008 * 109.46866 * 59.99561 * 4 3 2 33 33 H 0.97003 * 119.99925 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.46015 * 301.33456 * 16 14 5 35 35 H 1.09000 * 109.46347 * 61.29845 * 16 14 5 36 36 H 1.09003 * 109.50170 * 178.67876 * 17 16 14 37 37 H 1.09010 * 109.52002 * 58.59945 * 17 16 14 38 38 H 1.08999 * 109.57822 * 294.84233 * 18 17 16 39 39 H 1.08993 * 109.58391 * 174.42147 * 18 17 16 40 40 H 1.08999 * 109.47545 * 59.98992 * 21 20 19 41 41 H 1.08997 * 109.47540 * 179.97438 * 21 20 19 42 42 H 1.09001 * 109.47107 * 299.99562 * 21 20 19 43 43 H 1.08999 * 109.59011 * 293.82394 * 23 19 18 44 44 H 1.09007 * 109.70124 * 173.46739 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.4006 3.4294 1.1795 7 1 4.2023 4.4812 1.3239 8 6 5.0025 2.6915 2.1896 9 7 4.7424 2.9670 3.4501 10 14 6.1815 1.3079 1.7599 11 1 7.5759 1.8181 1.7911 12 1 6.0347 0.2080 2.7468 13 1 5.8715 0.7976 0.4002 14 6 4.1806 3.5569 -1.2624 15 1 3.8772 2.9130 -2.0879 16 6 3.2824 4.7953 -1.2228 17 6 3.3842 5.5442 -2.5535 18 6 4.8303 6.0024 -2.7678 19 7 5.7166 4.8353 -2.6627 20 6 6.5876 4.5435 -3.6490 21 6 6.6586 5.4175 -4.8745 22 8 7.3142 3.5775 -3.5501 23 6 5.6357 3.9926 -1.4619 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9330 0.9288 0.8909 32 1 3.9337 0.9285 -0.8891 33 1 5.1626 2.4511 4.1560 34 1 2.2494 4.4896 -1.0563 35 1 3.6022 5.4502 -0.4123 36 1 2.7265 6.4132 -2.5333 37 1 3.0879 4.8825 -3.3675 38 1 5.0982 6.7345 -2.0059 39 1 4.9294 6.4487 -3.7572 40 1 6.9232 6.4335 -4.5815 41 1 7.4149 5.0275 -5.5557 42 1 5.6891 5.4240 -5.3728 43 1 5.9693 4.5607 -0.5935 44 1 6.2667 3.1126 -1.5872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169625520.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:13 Heat of formation + Delta-G solvation = -30.691719 kcal Electronic energy + Delta-G solvation = -21977.311891 eV Core-core repulsion = 18929.684502 eV Total energy + Delta-G solvation = -3047.627389 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.81075 -37.53896 -35.88040 -33.95706 -32.32371 -31.48457 -30.52022 -29.03630 -27.44306 -24.76541 -24.18107 -22.98562 -21.39305 -20.44085 -19.86711 -18.62226 -16.85398 -16.43930 -15.54363 -15.41228 -14.97294 -14.57109 -14.40682 -13.95728 -13.67755 -13.45816 -13.03912 -12.92996 -12.76732 -12.53659 -12.38067 -12.28170 -11.97543 -11.79966 -11.70732 -11.22784 -11.12671 -10.77111 -10.63586 -10.54272 -10.39394 -10.30213 -10.19934 -9.84111 -9.67916 -9.55723 -9.39708 -8.43768 -8.26964 -6.82343 -6.08518 -3.34562 2.87299 3.31117 3.40484 3.52834 3.60905 4.56422 4.74920 4.80422 5.06841 5.17924 5.21565 5.30952 5.36062 5.37930 5.42271 5.51611 5.61032 5.63377 5.72584 5.84393 5.91484 5.97646 6.02864 6.18435 6.19009 6.21973 6.30718 6.35100 6.38171 6.50280 6.57681 6.61103 6.65663 6.77935 6.96205 6.99318 7.01100 7.16553 7.74164 8.01914 8.36415 8.45480 8.99997 9.72804 10.15741 11.06698 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.007009 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.469682 B = 3993.779602 C = 4785.578843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.134 4.134 4 C 0.153 3.847 5 N -0.594 5.594 6 C -0.277 4.277 7 H 0.077 0.923 8 C 0.051 3.949 9 N -0.878 5.878 10 Si 0.841 3.159 11 H -0.290 1.290 12 H -0.295 1.295 13 H -0.261 1.261 14 C 0.169 3.831 15 H 0.052 0.948 16 C -0.126 4.126 17 C -0.133 4.133 18 C 0.108 3.892 19 N -0.608 5.608 20 C 0.505 3.495 21 C -0.171 4.171 22 O -0.554 6.554 23 C 0.099 3.901 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.030 0.970 33 H 0.263 0.737 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.560 4.237 -13.267 14.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.173 4.173 4 C 0.027 3.973 5 N -0.315 5.315 6 C -0.405 4.405 7 H 0.095 0.905 8 C -0.152 4.152 9 N -0.517 5.517 10 Si 0.667 3.333 11 H -0.218 1.218 12 H -0.221 1.221 13 H -0.186 1.186 14 C 0.061 3.939 15 H 0.070 0.930 16 C -0.165 4.165 17 C -0.171 4.171 18 C -0.015 4.015 19 N -0.342 5.342 20 C 0.293 3.707 21 C -0.231 4.231 22 O -0.433 6.433 23 C -0.024 4.024 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.144 3.690 -12.996 14.131 hybrid contribution 0.720 -0.702 0.011 1.006 sum -3.424 2.987 -12.985 13.757 Atomic orbital electron populations 1.21749 0.96609 1.00604 1.01523 1.21519 0.95176 0.98389 1.01263 1.22170 0.98828 0.94655 1.01696 1.21153 0.91388 0.85876 0.98888 1.44133 1.73963 1.11358 1.02043 1.18542 1.35852 0.96555 0.89524 0.90516 1.25400 0.97901 0.97149 0.94740 1.70072 1.40666 1.41652 0.99274 0.87450 0.83841 0.82928 0.79049 1.21769 1.22138 1.18558 1.20618 0.91875 0.92537 0.88914 0.92974 1.21950 1.00667 0.98289 0.95621 1.21937 0.95384 1.00458 0.99355 1.21743 0.90174 0.87759 1.01835 1.48310 1.37469 1.28364 1.20023 1.20735 0.79823 0.85678 0.84476 1.21920 1.04244 1.00535 0.96414 1.90703 1.42710 1.29802 1.80067 1.22305 0.99744 0.95063 0.85267 0.93582 0.92820 0.93231 0.92877 0.92359 0.91442 0.93335 0.92686 0.95120 0.92759 0.92063 0.91202 0.91244 0.92141 0.91297 0.90333 0.89721 0.89486 0.89691 0.90306 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.13 -1.97 5.93 -26.73 -0.16 -2.13 16 3 C -0.13 -2.47 5.53 -26.74 -0.15 -2.62 16 4 C 0.15 3.28 3.85 -4.05 -0.02 3.26 16 5 N -0.59 -13.43 2.02 -165.53 -0.33 -13.76 16 6 C -0.28 -7.26 8.43 -15.06 -0.13 -7.39 16 7 H 0.08 2.15 7.04 -52.49 -0.37 1.78 16 8 C 0.05 1.41 4.98 -17.43 -0.09 1.32 16 9 N -0.88 -25.89 13.97 55.49 0.78 -25.12 16 10 Si 0.84 21.61 26.29 -169.99 -4.47 17.14 16 11 H -0.29 -7.71 7.11 56.52 0.40 -7.30 16 12 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 13 H -0.26 -6.53 5.96 56.52 0.34 -6.20 16 14 C 0.17 3.24 2.78 -67.81 -0.19 3.05 16 15 H 0.05 0.99 7.87 -51.93 -0.41 0.58 16 16 C -0.13 -2.07 5.12 -26.69 -0.14 -2.21 16 17 C -0.13 -1.62 6.08 -26.61 -0.16 -1.78 16 18 C 0.11 1.27 6.34 -3.71 -0.02 1.25 16 19 N -0.61 -9.62 2.97 -172.77 -0.51 -10.13 16 20 C 0.50 8.10 7.81 -10.99 -0.09 8.02 16 21 C -0.17 -1.75 8.67 36.00 0.31 -1.44 16 22 O -0.55 -11.57 16.50 5.56 0.09 -11.48 16 23 C 0.10 1.96 5.75 -3.71 -0.02 1.94 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 1.39 8.14 -51.92 -0.42 0.97 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 1.30 4.58 -51.93 -0.24 1.06 16 32 H 0.03 0.63 8.04 -51.92 -0.42 0.21 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.27 7.06 -51.93 -0.37 0.91 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.67 5.93 -51.93 -0.31 0.37 16 40 H 0.08 0.69 7.94 -51.93 -0.41 0.28 16 41 H 0.09 0.87 8.12 -51.93 -0.42 0.45 16 42 H 0.08 0.69 7.69 -51.93 -0.40 0.29 16 43 H 0.08 1.68 7.48 -51.93 -0.39 1.29 16 44 H 0.08 1.84 7.01 -51.93 -0.36 1.48 16 LS Contribution 339.76 15.07 5.12 5.12 Total: -1.00 -31.30 339.76 -7.75 -39.05 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -7.94 Total: -0.49 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -0.47 Total: -0.33 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.07 Total: -49.01 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.47 Total: 17.14 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.30 -7.75 -39.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169625520.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.359 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds