Wall clock time and date at job start Mon Mar 30 2020 01:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47250 * 2 1 4 4 C 1.52994 * 109.47464 * 179.97438 * 3 2 1 5 5 N 1.46492 * 109.47454 * 179.97438 * 4 3 2 6 6 C 1.36937 * 120.00198 * 95.87914 * 5 4 3 7 7 H 1.07997 * 120.00388 * 215.98698 * 6 5 4 8 8 C 1.38819 * 119.99809 * 35.97856 * 6 5 4 9 9 N 1.31621 * 120.00049 * 214.50805 * 8 6 5 10 10 Si 1.86796 * 119.99846 * 34.51533 * 8 6 5 11 11 H 1.48508 * 109.47203 * 95.13100 * 10 8 6 12 12 H 1.48501 * 109.47250 * 215.13453 * 10 8 6 13 13 H 1.48503 * 109.47384 * 335.13349 * 10 8 6 14 14 C 1.46503 * 120.00236 * 275.87952 * 5 4 3 15 15 H 1.08999 * 109.49772 * 359.27013 * 14 5 4 16 16 C 1.53035 * 109.49767 * 119.37258 * 14 5 4 17 17 C 1.53040 * 109.53995 * 181.31664 * 16 14 5 18 18 C 1.53197 * 109.31383 * 298.63641 * 17 16 14 19 19 N 1.46926 * 108.77562 * 54.63046 * 18 17 16 20 20 C 1.34772 * 120.63116 * 126.41306 * 19 18 17 21 21 C 1.50697 * 119.99956 * 359.97438 * 20 19 18 22 22 O 1.21282 * 119.99980 * 179.97438 * 20 19 18 23 23 C 1.46927 * 118.73699 * 306.39371 * 19 18 17 24 24 H 1.08998 * 109.47266 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47047 * 300.00323 * 1 2 3 26 26 H 1.09002 * 109.46951 * 60.00168 * 1 2 3 27 27 H 1.08998 * 109.47047 * 239.99677 * 2 1 3 28 28 H 1.09002 * 109.46951 * 119.99832 * 2 1 3 29 29 H 1.09008 * 109.47437 * 59.99800 * 3 2 1 30 30 H 1.09002 * 109.47006 * 299.99798 * 3 2 1 31 31 H 1.09002 * 109.46935 * 299.99953 * 4 3 2 32 32 H 1.09008 * 109.46866 * 59.99561 * 4 3 2 33 33 H 0.97003 * 119.99925 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.46015 * 301.33456 * 16 14 5 35 35 H 1.09000 * 109.46347 * 61.29845 * 16 14 5 36 36 H 1.09003 * 109.50170 * 178.67876 * 17 16 14 37 37 H 1.09010 * 109.52002 * 58.59945 * 17 16 14 38 38 H 1.08999 * 109.57822 * 294.84233 * 18 17 16 39 39 H 1.08993 * 109.58391 * 174.42147 * 18 17 16 40 40 H 1.08999 * 109.47545 * 59.98992 * 21 20 19 41 41 H 1.08997 * 109.47540 * 179.97438 * 21 20 19 42 42 H 1.09001 * 109.47107 * 299.99562 * 21 20 19 43 43 H 1.08999 * 109.59011 * 293.82394 * 23 19 18 44 44 H 1.09007 * 109.70124 * 173.46739 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.4006 3.4294 1.1795 7 1 4.2023 4.4812 1.3239 8 6 5.0025 2.6915 2.1896 9 7 4.7424 2.9670 3.4501 10 14 6.1815 1.3079 1.7599 11 1 7.5759 1.8181 1.7911 12 1 6.0347 0.2080 2.7468 13 1 5.8715 0.7976 0.4002 14 6 4.1806 3.5569 -1.2624 15 1 3.8772 2.9130 -2.0879 16 6 3.2824 4.7953 -1.2228 17 6 3.3842 5.5442 -2.5535 18 6 4.8303 6.0024 -2.7678 19 7 5.7166 4.8353 -2.6627 20 6 6.5876 4.5435 -3.6490 21 6 6.6586 5.4175 -4.8745 22 8 7.3142 3.5775 -3.5501 23 6 5.6357 3.9926 -1.4619 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9330 0.9288 0.8909 32 1 3.9337 0.9285 -0.8891 33 1 5.1626 2.4511 4.1560 34 1 2.2494 4.4896 -1.0563 35 1 3.6022 5.4502 -0.4123 36 1 2.7265 6.4132 -2.5333 37 1 3.0879 4.8825 -3.3675 38 1 5.0982 6.7345 -2.0059 39 1 4.9294 6.4487 -3.7572 40 1 6.9232 6.4335 -4.5815 41 1 7.4149 5.0275 -5.5557 42 1 5.6891 5.4240 -5.3728 43 1 5.9693 4.5607 -0.5935 44 1 6.2667 3.1126 -1.5872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169625520.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:13 Heat of formation + Delta-G solvation = -50.132672 kcal Electronic energy + Delta-G solvation = -21978.154914 eV Core-core repulsion = 18929.684502 eV Total energy + Delta-G solvation = -3048.470412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.12205 -39.07829 -37.35570 -35.41123 -34.05766 -33.04068 -31.80891 -30.19424 -29.03081 -26.15356 -25.88043 -24.38271 -22.72687 -21.89151 -21.49781 -19.89101 -18.43076 -18.02034 -17.20710 -16.81515 -16.31570 -16.22349 -15.91768 -15.31035 -15.16166 -14.84655 -14.46655 -14.40609 -14.10806 -13.99406 -13.73741 -13.47546 -13.32559 -13.01433 -12.97632 -12.93405 -12.78658 -12.31659 -12.04182 -12.01378 -11.85933 -11.79651 -11.66981 -11.47667 -11.29556 -11.25611 -10.80960 -10.55210 -9.65107 -8.73804 -8.27461 -5.46873 1.26658 1.38521 1.47267 1.66099 2.08481 2.41634 2.94288 3.37733 3.71358 4.03377 4.06516 4.11814 4.17342 4.22421 4.31287 4.38380 4.44227 4.48927 4.51528 4.62129 4.68223 4.77069 4.79641 4.88620 4.93502 4.98674 5.01946 5.03648 5.06274 5.13541 5.16165 5.22203 5.37229 5.42705 5.47464 5.52797 5.58026 5.61472 5.93296 6.21802 6.54761 7.00250 7.21748 7.67270 8.11551 8.92309 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.007009 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.469682 B = 3993.779602 C = 4785.578843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C -0.119 4.119 4 C 0.146 3.854 5 N -0.606 5.606 6 C -0.246 4.246 7 H 0.054 0.946 8 C 0.004 3.996 9 N -0.922 5.922 10 Si 0.888 3.112 11 H -0.305 1.305 12 H -0.296 1.296 13 H -0.254 1.254 14 C 0.169 3.831 15 H 0.061 0.939 16 C -0.119 4.119 17 C -0.123 4.123 18 C 0.103 3.897 19 N -0.608 5.608 20 C 0.494 3.506 21 C -0.159 4.159 22 O -0.614 6.614 23 C 0.110 3.890 24 H 0.065 0.935 25 H 0.046 0.954 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.030 0.970 32 H 0.041 0.959 33 H 0.261 0.739 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.127 0.873 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.118 0.882 43 H 0.051 0.949 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.093 5.308 -16.714 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.162 4.162 3 C -0.159 4.159 4 C 0.021 3.979 5 N -0.328 5.328 6 C -0.376 4.376 7 H 0.071 0.929 8 C -0.194 4.194 9 N -0.564 5.564 10 Si 0.716 3.284 11 H -0.234 1.234 12 H -0.223 1.223 13 H -0.178 1.178 14 C 0.062 3.938 15 H 0.079 0.921 16 C -0.158 4.158 17 C -0.161 4.161 18 C -0.018 4.018 19 N -0.341 5.341 20 C 0.285 3.715 21 C -0.217 4.217 22 O -0.497 6.497 23 C -0.015 4.015 24 H 0.084 0.916 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.120 0.880 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.145 0.855 40 H 0.132 0.868 41 H 0.107 0.893 42 H 0.136 0.864 43 H 0.070 0.930 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.706 4.783 -16.498 18.100 hybrid contribution 1.177 -0.971 1.014 1.832 sum -4.529 3.812 -15.484 16.577 Atomic orbital electron populations 1.21703 0.94463 1.02035 1.01796 1.21505 0.97055 0.96122 1.01489 1.21968 0.96267 0.96690 1.00977 1.21224 0.93562 0.84995 0.98114 1.44308 1.74213 1.11924 1.02328 1.18446 1.33190 0.95488 0.90453 0.92866 1.25769 0.99630 0.99266 0.94779 1.70133 1.42685 1.43633 0.99978 0.86681 0.81604 0.81119 0.78987 1.23359 1.22263 1.17779 1.20783 0.92201 0.93561 0.87284 0.92127 1.21820 0.99277 0.96787 0.97906 1.21905 0.96374 1.01312 0.96511 1.22104 0.88856 0.86131 1.04752 1.48415 1.38317 1.28837 1.18520 1.21939 0.78346 0.85492 0.85683 1.21944 1.06332 1.00300 0.93172 1.90679 1.44954 1.32706 1.81377 1.21841 0.99114 0.94117 0.86462 0.91607 0.93491 0.92039 0.91427 0.93417 0.94137 0.91899 0.95164 0.94106 0.92965 0.92424 0.93599 0.87992 0.90860 0.91150 0.85477 0.86788 0.89324 0.86355 0.93044 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.91 71.98 0.71 -2.77 16 2 C -0.12 -3.70 5.93 30.60 0.18 -3.51 16 3 C -0.12 -4.34 5.53 30.59 0.17 -4.17 16 4 C 0.15 6.31 3.85 86.38 0.33 6.64 16 5 N -0.61 -27.90 2.02 -677.61 -1.37 -29.27 16 6 C -0.25 -13.41 8.43 84.04 0.71 -12.70 16 7 H 0.05 3.13 7.04 -2.91 -0.02 3.11 16 8 C 0.00 0.23 4.98 84.86 0.42 0.65 16 9 N -0.92 -56.67 13.97 21.65 0.30 -56.36 16 10 Si 0.89 46.67 26.29 68.60 1.80 48.48 16 11 H -0.30 -16.58 7.11 99.48 0.71 -15.87 16 12 H -0.30 -15.46 7.11 99.48 0.71 -14.75 16 13 H -0.25 -12.82 5.96 99.48 0.59 -12.23 16 14 C 0.17 6.44 2.78 45.07 0.13 6.56 16 15 H 0.06 2.22 7.87 -2.39 -0.02 2.20 16 16 C -0.12 -3.75 5.12 30.62 0.16 -3.59 16 17 C -0.12 -2.49 6.08 30.67 0.19 -2.30 16 18 C 0.10 2.01 6.34 86.36 0.55 2.56 16 19 N -0.61 -18.21 2.97 -818.90 -2.43 -20.64 16 20 C 0.49 14.96 7.81 87.66 0.68 15.64 16 21 C -0.16 -2.51 8.67 71.24 0.62 -1.89 16 22 O -0.61 -25.86 16.50 -3.04 -0.05 -25.91 16 23 C 0.11 4.40 5.75 86.36 0.50 4.90 16 24 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.03 1.45 4.58 -2.39 -0.01 1.44 16 32 H 0.04 1.66 8.04 -2.38 -0.02 1.64 16 33 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 34 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.05 1.67 7.06 -2.39 -0.02 1.65 16 36 H 0.10 1.52 8.14 -2.39 -0.02 1.51 16 37 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.13 1.34 5.93 -2.39 -0.01 1.33 16 40 H 0.11 1.20 7.94 -2.39 -0.02 1.18 16 41 H 0.09 1.44 8.12 -2.39 -0.02 1.42 16 42 H 0.12 1.15 7.69 -2.39 -0.02 1.13 16 43 H 0.05 2.30 7.48 -2.39 -0.02 2.29 16 44 H 0.04 2.13 7.01 -2.38 -0.02 2.11 16 Total: -1.00 -73.86 339.76 4.43 -69.43 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 0.83 Total: 8.27 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 5.34 Total: 6.01 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -3.50 Total: -106.28 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.05 Total: -25.91 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.80 Total: 48.48 kcal Total: -73.86 4.43 -69.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169625520.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.296 kcal (2) G-P(sol) polarization free energy of solvation -73.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds