Wall clock time and date at job start Mon Mar 30 2020 00:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46549 * 2 1 4 4 C 1.52994 * 109.47308 * 119.99853 * 2 1 3 5 5 H 1.08997 * 109.47312 * 185.10047 * 4 2 1 6 6 N 1.46906 * 109.47377 * 65.09985 * 4 2 1 7 7 C 1.46895 * 111.00408 * 154.99982 * 6 4 2 8 8 C 1.52992 * 109.47329 * 155.00098 * 7 6 4 9 9 C 1.52998 * 109.47271 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.47344 * 300.00271 * 9 8 7 11 11 C 1.50691 * 109.47427 * 179.97438 * 10 9 8 12 12 H 1.08009 * 120.00099 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00173 * 179.97438 * 11 10 9 14 14 N 1.31507 * 119.99998 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00044 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47055 * 90.00104 * 15 13 11 17 17 H 1.48501 * 109.47066 * 210.00266 * 15 13 11 18 18 H 1.48506 * 109.47107 * 330.00076 * 15 13 11 19 19 C 1.53001 * 109.46987 * 59.99673 * 10 9 8 20 20 C 1.52998 * 109.47345 * 300.00326 * 19 10 9 21 21 C 1.50701 * 109.47296 * 305.10205 * 4 2 1 22 22 N 1.34774 * 120.00059 * 273.14328 * 21 4 2 23 23 O 1.21283 * 120.00222 * 93.13830 * 21 4 2 24 24 H 1.08991 * 109.47251 * 60.00395 * 1 2 3 25 25 H 1.09000 * 109.46499 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46877 * 299.99378 * 1 2 3 27 27 H 1.08994 * 109.47095 * 239.99871 * 2 1 3 28 28 H 1.09003 * 109.46483 * 174.27549 * 3 2 1 29 29 H 1.09001 * 109.47174 * 294.27474 * 3 2 1 30 30 H 1.08995 * 109.47369 * 54.27779 * 3 2 1 31 31 H 1.00899 * 110.99551 * 278.95628 * 6 4 2 32 32 H 1.09003 * 109.47129 * 34.99812 * 7 6 4 33 33 H 1.09003 * 109.47248 * 59.99787 * 8 7 6 34 34 H 1.09000 * 109.47247 * 299.99947 * 8 7 6 35 35 H 1.09002 * 109.47346 * 180.02562 * 9 8 7 36 36 H 1.09000 * 109.47310 * 60.00477 * 9 8 7 37 37 H 1.09003 * 109.46546 * 299.99836 * 10 9 8 38 38 H 0.96998 * 120.00372 * 179.97438 * 14 13 11 39 39 H 1.08992 * 109.46850 * 60.00163 * 19 10 9 40 40 H 1.09000 * 109.47076 * 180.02562 * 19 10 9 41 41 H 1.09003 * 109.47165 * 300.00435 * 20 19 10 42 42 H 1.08994 * 109.47241 * 180.02562 * 20 19 10 43 43 H 0.97005 * 119.99793 * 4.91579 * 22 21 4 44 44 H 0.96998 * 120.00540 * 184.91712 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1262 -0.6427 1.2960 6 7 1.6536 -2.1372 1.1893 7 6 2.5658 -2.9662 1.9884 8 6 1.8450 -4.2436 2.4235 9 6 2.7949 -5.1068 3.2563 10 6 4.0199 -5.4734 2.4161 11 6 4.9558 -6.3230 3.2365 12 1 4.7024 -6.5759 4.2555 13 6 6.1355 -6.7775 2.6864 14 7 6.4443 -6.4692 1.4458 15 14 7.2960 -7.8301 3.7036 16 1 6.9498 -9.2631 3.5248 17 1 8.6934 -7.5991 3.2576 18 1 7.1673 -7.4650 5.1373 19 6 4.7407 -4.1959 1.9810 20 6 3.7908 -3.3327 1.1482 21 6 1.4373 -0.0875 2.4764 22 7 2.0350 0.9767 3.0480 23 8 0.4143 -0.5350 2.9497 24 1 -0.3633 0.5137 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.1251 1.4443 0.1025 29 1 1.7627 1.9259 -0.9368 30 1 1.5953 1.9851 0.8343 31 1 0.6972 -2.2637 1.4850 32 1 2.8838 -2.4101 2.8703 33 1 1.5269 -4.7998 1.5416 34 1 0.9725 -3.9825 3.0225 35 1 2.2815 -6.0171 3.5659 36 1 3.1124 -4.5505 4.1382 37 1 3.7023 -6.0297 1.5342 38 1 7.2744 -6.7886 1.0588 39 1 5.0582 -3.6396 2.8628 40 1 5.6132 -4.4570 1.3821 41 1 3.4732 -3.8891 0.2663 42 1 4.3045 -2.4229 0.8379 43 1 2.8124 1.3789 2.6298 44 1 1.6879 1.3404 3.8775 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173327442.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:24 Heat of formation + Delta-G solvation = -74.216475 kcal Electronic energy + Delta-G solvation = -21736.044507 eV Core-core repulsion = 18686.529743 eV Total energy + Delta-G solvation = -3049.514764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.30895 -37.82612 -36.03148 -34.02244 -33.43991 -31.89071 -29.69656 -28.67482 -27.26213 -25.85674 -23.87158 -22.01130 -21.58960 -20.35501 -19.55830 -18.65007 -17.35409 -16.95569 -16.27745 -15.80991 -14.96477 -14.68355 -14.54277 -14.30735 -13.76223 -13.48137 -13.11875 -13.02090 -12.77835 -12.42409 -12.18021 -12.08891 -11.59870 -11.29731 -11.16983 -11.09364 -11.00431 -10.89083 -10.61038 -10.53093 -10.25934 -10.11078 -10.04537 -9.78582 -9.74022 -9.29187 -8.84881 -8.62931 -8.25301 -8.21528 -5.92792 -3.98584 2.56254 3.33049 3.39680 3.43127 3.46209 4.21409 4.48211 4.72640 4.79262 4.98128 5.04093 5.30908 5.36970 5.44933 5.48009 5.57367 5.67926 5.74217 5.79671 5.94744 5.95542 6.17029 6.22659 6.28605 6.38332 6.44130 6.49523 6.60509 6.66712 6.74320 6.83209 6.98738 7.12462 7.21242 7.29588 7.41691 7.60447 7.62568 7.81506 8.09454 8.15533 8.22552 8.53854 9.05669 9.65643 11.12733 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032394 B = 0.004226 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.138039 B = 6623.894966 C = 6772.840241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.078 4.078 3 C -0.158 4.158 4 C 0.073 3.927 5 H 0.098 0.902 6 N -0.662 5.662 7 C 0.090 3.910 8 C -0.116 4.116 9 C -0.105 4.105 10 C 0.049 3.951 11 C -0.512 4.512 12 H 0.053 0.947 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.887 3.113 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.109 4.109 20 C -0.101 4.101 21 C 0.496 3.504 22 N -0.857 5.857 23 O -0.544 6.544 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.092 0.908 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.350 0.650 32 H 0.033 0.967 33 H 0.064 0.936 34 H 0.044 0.956 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.026 0.974 38 H 0.259 0.741 39 H 0.029 0.971 40 H 0.093 0.907 41 H 0.060 0.940 42 H 0.037 0.963 43 H 0.401 0.599 44 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.568 16.420 -2.385 18.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.098 4.098 3 C -0.215 4.215 4 C -0.041 4.041 5 H 0.116 0.884 6 N -0.294 5.294 7 C -0.019 4.019 8 C -0.154 4.154 9 C -0.144 4.144 10 C 0.030 3.970 11 C -0.550 4.550 12 H 0.071 0.929 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.716 3.284 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.148 4.148 20 C -0.139 4.139 21 C 0.280 3.720 22 N -0.421 5.421 23 O -0.420 6.420 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.111 0.889 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.171 0.829 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.111 0.889 41 H 0.079 0.921 42 H 0.056 0.944 43 H 0.229 0.771 44 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -7.772 15.816 -2.943 17.867 hybrid contribution 0.723 0.113 1.696 1.848 sum -7.049 15.929 -1.247 17.463 Atomic orbital electron populations 1.21858 0.94757 1.02702 1.01266 1.21047 0.96489 0.94977 0.97265 1.22010 1.01139 0.96101 1.02291 1.21870 1.00639 0.90119 0.91498 0.88398 1.60891 1.07783 1.02560 1.58177 1.21662 0.93531 0.93079 0.93592 1.21698 0.97680 0.95902 1.00075 1.21595 0.97234 0.97354 0.98172 1.18653 0.90681 0.92900 0.94732 1.21255 1.04045 1.30830 0.98918 0.92915 1.24955 0.97885 0.96217 0.94903 1.69874 1.24283 1.45626 1.13170 0.86671 0.80301 0.80877 0.80586 1.20767 1.21316 1.20052 1.21620 0.99529 0.95600 0.98024 1.21629 0.94560 0.98806 0.98927 1.21994 0.84211 0.79685 0.86155 1.44110 1.34952 1.34143 1.28886 1.90713 1.23817 1.62742 1.64718 0.92851 0.91639 0.92977 0.88928 0.92279 0.91983 0.92659 0.82884 0.94860 0.91706 0.93710 0.93329 0.93720 0.95568 0.93146 0.95250 0.88911 0.92082 0.94403 0.77065 0.77408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.56 37.16 0.32 -1.28 16 2 C -0.08 -0.81 2.90 -90.62 -0.26 -1.07 16 3 C -0.16 -1.22 8.38 37.16 0.31 -0.91 16 4 C 0.07 0.91 2.00 -68.86 -0.14 0.77 16 5 H 0.10 1.18 7.11 -51.93 -0.37 0.81 16 6 N -0.66 -9.93 5.69 -100.96 -0.57 -10.50 16 7 C 0.09 1.58 2.30 -67.72 -0.16 1.43 16 8 C -0.12 -2.15 5.19 -26.74 -0.14 -2.29 16 9 C -0.11 -2.27 5.14 -26.73 -0.14 -2.40 16 10 C 0.05 1.22 2.10 -91.77 -0.19 1.03 16 11 C -0.51 -14.20 8.56 -34.44 -0.29 -14.50 16 12 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 13 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 14 N -0.89 -25.44 11.32 55.43 0.63 -24.81 16 15 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C -0.11 -2.56 4.98 -26.73 -0.13 -2.69 16 20 C -0.10 -1.95 5.41 -26.73 -0.14 -2.10 16 21 C 0.50 6.33 5.23 -10.99 -0.06 6.28 16 22 N -0.86 -7.57 8.01 31.22 0.25 -7.32 16 23 O -0.54 -8.95 15.92 5.56 0.09 -8.86 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.78 7.33 -51.93 -0.38 0.40 16 26 H 0.05 0.62 6.66 -51.93 -0.35 0.27 16 27 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.41 6.77 -51.93 -0.35 0.06 16 31 H 0.35 5.46 6.53 -39.29 -0.26 5.21 16 32 H 0.03 0.62 7.64 -51.93 -0.40 0.22 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.04 0.78 8.12 -51.93 -0.42 0.36 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.04 0.66 7.43 -51.93 -0.39 0.28 16 43 H 0.40 2.48 8.15 -40.82 -0.33 2.15 16 44 H 0.40 3.10 8.93 -40.82 -0.36 2.74 16 LS Contribution 336.09 15.07 5.06 5.06 Total: -1.00 -30.47 336.09 -8.37 -38.85 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -7.69 Total: 7.33 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -1.12 Total: -16.13 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.30 Total: -42.63 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.47 -8.37 -38.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327442.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.370 kcal (2) G-P(sol) polarization free energy of solvation -30.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds