Wall clock time and date at job start Mon Mar 30 2020 00:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46549 * 2 1 4 4 C 1.52994 * 109.47308 * 119.99853 * 2 1 3 5 5 H 1.08997 * 109.47312 * 185.10047 * 4 2 1 6 6 N 1.46906 * 109.47377 * 65.09985 * 4 2 1 7 7 C 1.46895 * 111.00408 * 154.99982 * 6 4 2 8 8 C 1.52992 * 109.47329 * 155.00098 * 7 6 4 9 9 C 1.52998 * 109.47271 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.47344 * 300.00271 * 9 8 7 11 11 C 1.50691 * 109.47427 * 179.97438 * 10 9 8 12 12 H 1.08009 * 120.00099 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00173 * 179.97438 * 11 10 9 14 14 N 1.31507 * 119.99998 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00044 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47055 * 90.00104 * 15 13 11 17 17 H 1.48501 * 109.47066 * 210.00266 * 15 13 11 18 18 H 1.48506 * 109.47107 * 330.00076 * 15 13 11 19 19 C 1.53001 * 109.46987 * 59.99673 * 10 9 8 20 20 C 1.52998 * 109.47345 * 300.00326 * 19 10 9 21 21 C 1.50701 * 109.47296 * 305.10205 * 4 2 1 22 22 N 1.34774 * 120.00059 * 273.14328 * 21 4 2 23 23 O 1.21283 * 120.00222 * 93.13830 * 21 4 2 24 24 H 1.08991 * 109.47251 * 60.00395 * 1 2 3 25 25 H 1.09000 * 109.46499 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46877 * 299.99378 * 1 2 3 27 27 H 1.08994 * 109.47095 * 239.99871 * 2 1 3 28 28 H 1.09003 * 109.46483 * 174.27549 * 3 2 1 29 29 H 1.09001 * 109.47174 * 294.27474 * 3 2 1 30 30 H 1.08995 * 109.47369 * 54.27779 * 3 2 1 31 31 H 1.00899 * 110.99551 * 278.95628 * 6 4 2 32 32 H 1.09003 * 109.47129 * 34.99812 * 7 6 4 33 33 H 1.09003 * 109.47248 * 59.99787 * 8 7 6 34 34 H 1.09000 * 109.47247 * 299.99947 * 8 7 6 35 35 H 1.09002 * 109.47346 * 180.02562 * 9 8 7 36 36 H 1.09000 * 109.47310 * 60.00477 * 9 8 7 37 37 H 1.09003 * 109.46546 * 299.99836 * 10 9 8 38 38 H 0.96998 * 120.00372 * 179.97438 * 14 13 11 39 39 H 1.08992 * 109.46850 * 60.00163 * 19 10 9 40 40 H 1.09000 * 109.47076 * 180.02562 * 19 10 9 41 41 H 1.09003 * 109.47165 * 300.00435 * 20 19 10 42 42 H 1.08994 * 109.47241 * 180.02562 * 20 19 10 43 43 H 0.97005 * 119.99793 * 4.91579 * 22 21 4 44 44 H 0.96998 * 120.00540 * 184.91712 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1262 -0.6427 1.2960 6 7 1.6536 -2.1372 1.1893 7 6 2.5658 -2.9662 1.9884 8 6 1.8450 -4.2436 2.4235 9 6 2.7949 -5.1068 3.2563 10 6 4.0199 -5.4734 2.4161 11 6 4.9558 -6.3230 3.2365 12 1 4.7024 -6.5759 4.2555 13 6 6.1355 -6.7775 2.6864 14 7 6.4443 -6.4692 1.4458 15 14 7.2960 -7.8301 3.7036 16 1 6.9498 -9.2631 3.5248 17 1 8.6934 -7.5991 3.2576 18 1 7.1673 -7.4650 5.1373 19 6 4.7407 -4.1959 1.9810 20 6 3.7908 -3.3327 1.1482 21 6 1.4373 -0.0875 2.4764 22 7 2.0350 0.9767 3.0480 23 8 0.4143 -0.5350 2.9497 24 1 -0.3633 0.5137 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.1251 1.4443 0.1025 29 1 1.7627 1.9259 -0.9368 30 1 1.5953 1.9851 0.8343 31 1 0.6972 -2.2637 1.4850 32 1 2.8838 -2.4101 2.8703 33 1 1.5269 -4.7998 1.5416 34 1 0.9725 -3.9825 3.0225 35 1 2.2815 -6.0171 3.5659 36 1 3.1124 -4.5505 4.1382 37 1 3.7023 -6.0297 1.5342 38 1 7.2744 -6.7886 1.0588 39 1 5.0582 -3.6396 2.8628 40 1 5.6132 -4.4570 1.3821 41 1 3.4732 -3.8891 0.2663 42 1 4.3045 -2.4229 0.8379 43 1 2.8124 1.3789 2.6298 44 1 1.6879 1.3404 3.8775 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173327442.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:23 Heat of formation + Delta-G solvation = -95.463944 kcal Electronic energy + Delta-G solvation = -21736.965866 eV Core-core repulsion = 18686.529743 eV Total energy + Delta-G solvation = -3050.436123 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.34635 -39.38554 -37.10776 -35.44233 -34.52620 -33.57559 -31.40386 -30.26635 -28.01983 -27.25588 -25.57737 -23.37905 -22.85355 -21.94867 -20.58096 -20.27764 -18.39863 -18.29878 -17.92232 -16.81532 -16.57069 -16.13106 -15.74108 -15.43127 -15.15592 -14.69550 -14.66103 -14.37784 -14.25026 -13.80005 -13.41368 -13.17370 -12.93258 -12.90203 -12.82164 -12.57315 -12.31073 -12.22981 -12.00492 -11.92837 -11.77907 -11.72349 -11.57954 -11.17293 -11.01552 -10.73328 -10.64382 -10.50876 -10.34162 -9.46849 -8.05167 -6.19083 1.41485 1.42294 1.52271 1.58521 2.44996 2.60760 3.05541 3.21197 3.87307 3.90504 3.95862 4.03688 4.15863 4.25490 4.39779 4.51997 4.56459 4.69295 4.77125 4.80655 4.83791 4.86686 4.97502 4.99037 5.03051 5.07145 5.15557 5.24673 5.29615 5.39928 5.45882 5.47169 5.50914 5.63163 5.72358 5.84846 6.02412 6.06674 6.21383 6.38433 6.44148 6.44996 6.92875 7.29693 7.48550 8.98773 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032394 B = 0.004226 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.138039 B = 6623.894966 C = 6772.840241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.075 4.075 3 C -0.154 4.154 4 C 0.070 3.930 5 H 0.106 0.894 6 N -0.660 5.660 7 C 0.102 3.898 8 C -0.109 4.109 9 C -0.098 4.098 10 C 0.046 3.954 11 C -0.537 4.537 12 H 0.047 0.953 13 C 0.015 3.985 14 N -0.914 5.914 15 Si 0.950 3.050 16 H -0.277 1.277 17 H -0.281 1.281 18 H -0.271 1.271 19 C -0.100 4.100 20 C -0.089 4.089 21 C 0.495 3.505 22 N -0.837 5.837 23 O -0.585 6.585 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.040 0.960 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.348 0.652 32 H 0.029 0.971 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.042 0.958 37 H -0.006 1.006 38 H 0.260 0.740 39 H 0.024 0.976 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.059 0.941 43 H 0.416 0.584 44 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.379 18.095 -2.259 19.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.094 4.094 3 C -0.212 4.212 4 C -0.044 4.044 5 H 0.124 0.876 6 N -0.292 5.292 7 C -0.007 4.007 8 C -0.147 4.147 9 C -0.136 4.136 10 C 0.027 3.973 11 C -0.575 4.575 12 H 0.066 0.934 13 C -0.184 4.184 14 N -0.554 5.554 15 Si 0.776 3.224 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.195 1.195 19 C -0.139 4.139 20 C -0.127 4.127 21 C 0.278 3.722 22 N -0.401 5.401 23 O -0.465 6.465 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.169 0.831 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.012 0.988 38 H 0.069 0.931 39 H 0.043 0.957 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.247 0.753 44 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -7.560 17.535 -2.816 19.302 hybrid contribution 0.671 -0.387 1.643 1.817 sum -6.889 17.147 -1.173 18.517 Atomic orbital electron populations 1.21817 0.95239 1.01722 1.01449 1.21048 0.96015 0.96442 0.95888 1.21990 1.01998 0.94076 1.03087 1.22025 1.01098 0.88695 0.92581 0.87596 1.60807 1.07083 1.04095 1.57235 1.21380 0.93112 0.92990 0.93221 1.21604 0.97486 0.95919 0.99677 1.21457 0.96395 0.97883 0.97911 1.18625 0.91893 0.93059 0.93710 1.21618 1.05057 1.31791 0.99077 0.93432 1.25696 0.99368 0.97351 0.95974 1.70009 1.24683 1.46278 1.14426 0.85681 0.78313 0.79191 0.79204 1.20308 1.20688 1.19519 1.21405 0.99189 0.95528 0.97794 1.21440 0.94677 0.98691 0.97883 1.21983 0.83792 0.80270 0.86113 1.43924 1.34762 1.32733 1.28730 1.90700 1.25664 1.64242 1.65861 0.91237 0.93243 0.94127 0.89176 0.90874 0.90886 0.92349 0.83066 0.95303 0.91963 0.92189 0.93556 0.93886 0.98789 0.93063 0.95726 0.91991 0.93235 0.92237 0.75268 0.76483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.56 71.98 0.62 -2.29 16 2 C -0.07 -1.37 2.90 -10.79 -0.03 -1.40 16 3 C -0.15 -1.89 8.38 71.98 0.60 -1.29 16 4 C 0.07 1.60 2.00 44.17 0.09 1.68 16 5 H 0.11 2.25 7.11 -2.39 -0.02 2.23 16 6 N -0.66 -18.99 5.69 -473.33 -2.69 -21.68 16 7 C 0.10 3.49 2.30 44.91 0.10 3.60 16 8 C -0.11 -4.00 5.19 30.59 0.16 -3.84 16 9 C -0.10 -4.25 5.14 30.60 0.16 -4.10 16 10 C 0.05 2.34 2.10 -11.54 -0.02 2.31 16 11 C -0.54 -30.35 8.56 25.60 0.22 -30.13 16 12 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 13 C 0.01 0.83 5.30 84.66 0.45 1.27 16 14 N -0.91 -53.15 11.32 21.45 0.24 -52.91 16 15 Si 0.95 44.10 29.54 68.60 2.03 46.13 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 C -0.10 -4.78 4.98 30.59 0.15 -4.62 16 20 C -0.09 -3.38 5.41 30.59 0.17 -3.22 16 21 C 0.49 11.74 5.23 87.66 0.46 12.20 16 22 N -0.84 -12.68 8.01 -173.53 -1.39 -14.07 16 23 O -0.58 -18.66 15.92 -3.04 -0.05 -18.71 16 24 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.05 1.14 7.33 -2.39 -0.02 1.12 16 26 H 0.04 0.91 6.66 -2.39 -0.02 0.89 16 27 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.69 6.77 -2.39 -0.02 0.67 16 31 H 0.35 10.56 6.53 -89.70 -0.59 9.98 16 32 H 0.03 1.02 7.64 -2.39 -0.02 1.01 16 33 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 35 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 37 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 38 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 39 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 3.33 6.07 -2.39 -0.01 3.32 16 41 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.06 2.00 7.43 -2.39 -0.02 1.98 16 43 H 0.42 3.84 8.15 -92.70 -0.76 3.08 16 44 H 0.40 5.37 8.93 -92.71 -0.83 4.54 16 Total: -1.00 -66.40 336.09 0.08 -66.32 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -1.17 Total: 24.75 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 3.12 Total: -29.82 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -3.84 Total: -88.66 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.05 Total: -18.71 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -66.40 0.08 -66.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327442.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.140 kcal (2) G-P(sol) polarization free energy of solvation -66.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds